Wall clock time and date at job start Wed Apr 1 2020 05:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46736 * 2 1 4 4 C 1.53003 * 109.46799 * 240.00616 * 2 1 3 5 5 N 1.46495 * 109.47141 * 120.00181 * 2 1 3 6 6 C 1.35035 * 124.88323 * 74.99935 * 5 2 1 7 7 C 1.35361 * 107.23052 * 179.97438 * 6 5 2 8 8 C 1.41500 * 105.50230 * 0.02562 * 7 6 5 9 9 C 1.47712 * 126.52216 * 179.97438 * 8 7 6 10 10 O 1.21573 * 119.99767 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00297 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27851 * 11 9 8 13 13 H 1.09007 * 112.88819 * 332.87764 * 12 11 9 14 14 C 1.53945 * 113.66352 * 104.22797 * 12 11 9 15 15 C 1.53949 * 87.29561 * 139.20570 * 14 12 11 16 16 H 1.09002 * 113.66335 * 89.73896 * 15 14 12 17 17 N 1.46505 * 113.66078 * 220.70004 * 15 14 12 18 18 C 1.36938 * 119.99680 * 255.49060 * 17 15 14 19 19 H 1.07994 * 120.00580 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99693 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00417 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00052 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47102 * 90.00097 * 22 20 18 24 24 H 1.48499 * 109.47386 * 209.99860 * 22 20 18 25 25 H 1.48497 * 109.47131 * 329.99930 * 22 20 18 26 26 C 1.52905 * 86.78348 * 335.26563 * 15 14 12 27 27 C 1.52903 * 121.13998 * 150.62796 * 26 15 14 28 28 C 1.53952 * 86.78281 * 100.81413 * 27 26 15 29 29 C 1.52914 * 121.12967 * 259.18583 * 26 15 14 30 30 N 1.28465 * 124.88828 * 255.24510 * 5 2 1 31 31 H 1.09005 * 109.46731 * 299.99835 * 1 2 3 32 32 H 1.08994 * 109.47149 * 59.99362 * 1 2 3 33 33 H 1.08998 * 109.47067 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46479 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47351 * 300.00097 * 3 2 1 36 36 H 1.08999 * 109.46739 * 60.00700 * 3 2 1 37 37 H 1.08998 * 109.46840 * 299.99562 * 4 2 1 38 38 H 1.08998 * 109.47592 * 59.99716 * 4 2 1 39 39 H 1.09001 * 109.46859 * 180.02562 * 4 2 1 40 40 H 1.08003 * 126.38761 * 359.97438 * 6 5 2 41 41 H 1.08003 * 127.25268 * 180.02562 * 7 6 5 42 42 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 43 43 H 1.09008 * 113.57875 * 253.80480 * 14 12 11 44 44 H 1.08998 * 113.58260 * 24.59978 * 14 12 11 45 45 H 0.96996 * 119.99896 * 75.49423 * 17 15 14 46 46 H 0.96997 * 120.00477 * 179.97438 * 21 20 18 47 47 H 1.08996 * 113.66072 * 215.28504 * 27 26 15 48 48 H 1.08998 * 113.66137 * 346.33797 * 27 26 15 49 49 H 1.09003 * 113.57686 * 270.12827 * 28 27 26 50 50 H 1.09003 * 113.57936 * 139.34237 * 28 27 26 51 51 H 1.08996 * 113.66908 * 13.65263 * 29 26 15 52 52 H 1.09006 * 113.66107 * 144.71142 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 2.0184 -0.6906 1.1961 6 6 2.0055 -2.0291 1.3744 7 6 2.5362 -2.2761 2.5949 8 6 2.8633 -1.0073 3.1290 9 6 3.4728 -0.7390 4.4474 10 8 3.7421 -1.6619 5.1917 11 7 3.7295 0.5288 4.8258 12 6 4.3397 0.7943 6.1310 13 1 4.1185 0.0218 6.8675 14 6 5.8322 1.1633 6.0517 15 6 5.5521 2.2250 7.1308 16 1 5.6715 1.8556 8.1494 17 7 6.2456 3.4947 6.9003 18 6 7.3465 3.8190 7.6472 19 1 7.7039 3.1386 8.4059 20 6 8.0033 5.0223 7.4292 21 7 7.5681 5.8515 6.5042 22 14 9.5055 5.4644 8.4476 23 1 10.7279 4.9604 7.7713 24 1 9.5910 6.9402 8.5889 25 1 9.3922 4.8442 9.7920 26 6 4.1038 2.2165 6.6408 27 6 2.9467 2.5352 7.5882 28 6 2.9365 3.9421 6.9631 29 6 3.5767 3.3118 5.7130 30 7 2.5164 -0.1098 2.2281 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6767 -1.7488 -1.2494 38 1 1.6767 -0.2073 -2.1393 39 1 3.1300 -0.7215 -1.2492 40 1 1.6400 -2.7653 0.6738 41 1 2.6797 -3.2390 3.0627 42 1 3.5143 1.2651 4.2322 43 1 6.4967 0.3665 6.3861 44 1 6.1266 1.5853 5.0908 45 1 5.9248 4.1057 6.2186 46 1 8.0268 6.6925 6.3521 47 1 2.0436 1.9597 7.3848 48 1 3.2282 2.5263 8.6411 49 1 3.5866 4.6515 7.4753 50 1 1.9347 4.3347 6.7891 51 1 4.3616 3.9233 5.2678 52 1 2.8507 2.9545 4.9826 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078639354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:17 Heat of formation + Delta-G solvation = 96.240056 kcal Electronic energy + Delta-G solvation = -31038.567504 eV Core-core repulsion = 27041.612668 eV Total energy + Delta-G solvation = -3996.954836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.88648 -40.45512 -38.66031 -37.13329 -34.77605 -34.02878 -32.45412 -31.08173 -30.81888 -29.69119 -28.02048 -27.76251 -25.43454 -25.19912 -24.09436 -23.81078 -22.31130 -21.45189 -20.38539 -20.26385 -19.57109 -18.12456 -17.69786 -16.88814 -16.51386 -16.25145 -15.99055 -15.01173 -14.82978 -14.74267 -14.60468 -14.46312 -14.04331 -13.95907 -13.90360 -13.31615 -12.96207 -12.91251 -12.83686 -12.65740 -12.53241 -12.39404 -12.29735 -12.01628 -11.77290 -11.68644 -11.64357 -11.44032 -11.17882 -10.92266 -10.86799 -10.76844 -10.65213 -10.16147 -10.01977 -9.99134 -9.76949 -9.60139 -9.39079 -9.36198 -9.18137 -8.81246 -8.51802 -6.93030 -5.76723 -3.04644 1.58185 2.05306 2.16174 3.40629 3.44803 3.50625 3.51653 3.56080 3.90076 4.18035 4.28791 4.53797 4.55184 4.61336 4.87177 4.89578 4.95571 5.02100 5.07475 5.12256 5.16204 5.17471 5.27902 5.31048 5.31565 5.33607 5.41288 5.51353 5.57733 5.61061 5.66622 5.75066 5.81664 5.97737 5.99382 6.04842 6.06557 6.13048 6.28378 6.32769 6.38283 6.47217 6.59218 6.63581 6.68362 6.73376 6.92061 7.00382 7.15424 7.66973 7.72905 7.93912 8.42194 8.43737 9.53968 10.11302 10.46519 11.45720 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014325 B = 0.002463 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.152574 B =11366.677919 C =11820.230351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.159 4.159 5 N -0.272 5.272 6 C -0.022 4.022 7 C -0.180 4.180 8 C -0.017 4.017 9 C 0.601 3.399 10 O -0.540 6.540 11 N -0.697 5.697 12 C 0.130 3.870 13 H 0.110 0.890 14 C -0.173 4.173 15 C 0.192 3.808 16 H 0.080 0.920 17 N -0.707 5.707 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.117 4.117 27 C -0.126 4.126 28 C -0.130 4.130 29 C -0.117 4.117 30 N -0.255 5.255 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.177 0.823 41 H 0.160 0.840 42 H 0.405 0.595 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.387 0.613 46 H 0.255 0.745 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.090 0.910 50 H 0.056 0.944 51 H 0.078 0.922 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.619 -12.798 -16.017 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.085 3.915 3 C -0.206 4.206 4 C -0.217 4.217 5 N -0.062 5.062 6 C -0.165 4.165 7 C -0.208 4.208 8 C -0.177 4.177 9 C 0.386 3.614 10 O -0.416 6.416 11 N -0.347 5.347 12 C 0.026 3.974 13 H 0.128 0.872 14 C -0.216 4.216 15 C 0.080 3.920 16 H 0.098 0.902 17 N -0.346 5.346 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.207 1.207 26 C -0.119 4.119 27 C -0.163 4.163 28 C -0.167 4.167 29 C -0.155 4.155 30 N -0.091 5.091 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.194 0.806 41 H 0.177 0.823 42 H 0.241 0.759 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.222 0.778 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.108 0.892 50 H 0.074 0.926 51 H 0.097 0.903 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.315 -12.170 -15.640 26.316 hybrid contribution 0.639 -0.184 -0.053 0.667 sum -16.676 -12.354 -15.692 26.019 Atomic orbital electron populations 1.22252 0.92256 1.03346 1.03867 1.21053 0.95005 0.94179 0.81220 1.21982 1.02677 0.92317 1.03660 1.22237 1.02680 1.01017 0.95797 1.45794 1.42764 1.04727 1.12923 1.22690 1.07478 0.86401 0.99890 1.21758 1.05228 0.98796 0.94982 1.22050 1.07773 0.91572 0.96346 1.16935 0.77576 0.83363 0.83565 1.90770 1.53569 1.44132 1.53099 1.45848 1.61949 1.07301 1.19610 1.22324 0.94333 0.96594 0.84179 0.87228 1.24274 0.94215 1.00609 1.02472 1.21060 0.87515 0.87660 0.95799 0.90178 1.42348 1.31622 1.17251 1.43346 1.19301 1.03355 1.01275 1.13204 0.91061 1.24730 0.99659 0.97138 0.99307 1.69653 1.42201 1.11133 1.35126 0.86202 0.83069 0.77287 0.79708 1.21769 1.21854 1.20738 1.23540 0.97407 0.93088 0.97888 1.22706 0.97557 0.97036 0.99045 1.22733 1.00043 0.96678 0.97287 1.22435 0.99737 0.96988 0.96302 1.73478 1.13715 1.26448 0.95459 0.91293 0.89960 0.91589 0.91181 0.90540 0.90517 0.91375 0.89711 0.91193 0.80631 0.82254 0.75939 0.92075 0.90177 0.77757 0.93530 0.90987 0.91444 0.89155 0.92561 0.90300 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 8.70 37.16 0.32 -0.48 16 2 C 0.17 1.09 1.21 -131.81 -0.16 0.93 16 3 C -0.15 -1.04 8.01 37.16 0.30 -0.74 16 4 C -0.16 -0.71 8.27 37.16 0.31 -0.40 16 5 N -0.27 -2.65 3.16 -48.61 -0.15 -2.81 16 6 C -0.02 -0.20 10.52 -17.17 -0.18 -0.38 16 7 C -0.18 -2.13 10.81 -39.37 -0.43 -2.56 16 8 C -0.02 -0.25 7.13 -82.77 -0.59 -0.84 16 9 C 0.60 9.91 7.82 -12.39 -0.10 9.81 16 10 O -0.54 -10.36 16.57 5.30 0.09 -10.27 16 11 N -0.70 -10.80 5.29 -54.35 -0.29 -11.09 16 12 C 0.13 2.16 4.08 -67.48 -0.28 1.89 16 13 H 0.11 1.87 7.54 -51.93 -0.39 1.48 16 14 C -0.17 -3.25 7.68 -25.75 -0.20 -3.45 16 15 C 0.19 3.85 4.35 -67.48 -0.29 3.55 16 16 H 0.08 1.61 8.12 -51.93 -0.42 1.19 16 17 N -0.71 -17.30 5.36 -52.99 -0.28 -17.58 16 18 C -0.24 -6.59 9.98 -15.06 -0.15 -6.74 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 22 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 26 C -0.12 -1.95 1.06 -154.71 -0.16 -2.11 16 27 C -0.13 -1.92 7.84 -26.28 -0.21 -2.12 16 28 C -0.13 -2.05 8.08 -25.75 -0.21 -2.26 16 29 C -0.12 -1.87 6.77 -26.28 -0.18 -2.05 16 30 N -0.26 -3.24 10.62 33.42 0.35 -2.88 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.64 7.99 -51.93 -0.42 0.22 16 37 H 0.07 0.24 7.27 -51.93 -0.38 -0.14 16 38 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.18 0.92 7.47 -52.48 -0.39 0.53 16 41 H 0.16 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.40 5.87 6.65 -40.82 -0.27 5.60 16 43 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 44 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 45 H 0.39 9.93 5.87 -40.82 -0.24 9.69 16 46 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.08 1.45 6.43 -51.93 -0.33 1.12 16 52 H 0.07 1.00 6.96 -51.93 -0.36 0.64 16 LS Contribution 417.08 15.07 6.29 6.29 Total: -1.00 -32.74 417.08 -9.26 -42.00 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -8.67 Total: 14.42 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -2.29 Total: -8.39 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.35 Total: -61.40 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.74 -9.26 -42.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078639354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.242 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds