Wall clock time and date at job start Wed Apr 1 2020 05:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47317 * 2 1 4 4 C 1.53000 * 109.47246 * 239.99341 * 2 1 3 5 5 N 1.46509 * 109.46953 * 119.99514 * 2 1 3 6 6 C 1.35040 * 124.88183 * 75.00211 * 5 2 1 7 7 C 1.35364 * 107.22576 * 179.97438 * 6 5 2 8 8 C 1.41501 * 105.50382 * 359.97438 * 7 6 5 9 9 C 1.47708 * 126.51704 * 179.97438 * 8 7 6 10 10 O 1.21579 * 119.99957 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99975 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99818 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.88574 * 23.66055 * 12 11 9 14 14 C 1.53948 * 113.66423 * 252.19151 * 12 11 9 15 15 C 1.53957 * 87.29686 * 270.26262 * 14 12 11 16 16 H 1.08997 * 113.66354 * 220.80031 * 15 14 12 17 17 N 1.46492 * 113.65902 * 89.73656 * 15 14 12 18 18 C 1.36945 * 119.99826 * 107.81807 * 17 15 14 19 19 H 1.08001 * 119.99727 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00195 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99844 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99990 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46931 * 89.99966 * 22 20 18 24 24 H 1.48495 * 109.47317 * 210.00235 * 22 20 18 25 25 H 1.48500 * 109.47035 * 329.99927 * 22 20 18 26 26 C 1.52909 * 113.65947 * 155.00224 * 12 11 9 27 27 C 1.52910 * 121.13680 * 215.29369 * 26 12 11 28 28 C 1.53949 * 86.78077 * 100.82535 * 27 26 12 29 29 C 1.52905 * 121.13655 * 323.86096 * 26 12 11 30 30 N 1.28460 * 124.88608 * 255.24232 * 5 2 1 31 31 H 1.08997 * 109.47256 * 299.99782 * 1 2 3 32 32 H 1.08998 * 109.46905 * 60.00706 * 1 2 3 33 33 H 1.09005 * 109.46976 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47323 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46579 * 300.00046 * 3 2 1 36 36 H 1.08997 * 109.47298 * 59.99838 * 3 2 1 37 37 H 1.08996 * 109.47383 * 300.00046 * 4 2 1 38 38 H 1.08997 * 109.46844 * 60.00819 * 4 2 1 39 39 H 1.08998 * 109.47177 * 180.02562 * 4 2 1 40 40 H 1.08004 * 126.38387 * 359.97438 * 6 5 2 41 41 H 1.08004 * 127.24256 * 179.97438 * 7 6 5 42 42 H 0.96995 * 120.00175 * 0.02562 * 11 9 8 43 43 H 1.09001 * 113.57503 * 155.65942 * 14 12 11 44 44 H 1.08996 * 113.57974 * 24.86866 * 14 12 11 45 45 H 0.97003 * 120.00647 * 287.81186 * 17 15 14 46 46 H 0.96997 * 119.99721 * 180.02562 * 21 20 18 47 47 H 1.09006 * 113.66074 * 215.29190 * 27 26 12 48 48 H 1.08994 * 113.66448 * 346.35155 * 27 26 12 49 49 H 1.09009 * 113.57633 * 270.12923 * 28 27 26 50 50 H 1.09000 * 113.65567 * 139.34741 * 28 27 26 51 51 H 1.08990 * 113.66878 * 13.64950 * 29 26 12 52 52 H 1.09000 * 113.66430 * 144.61574 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 2.0183 -0.6906 1.1963 6 6 2.0054 -2.0291 1.3747 7 6 2.5360 -2.2759 2.5953 8 6 2.8642 -1.0070 3.1287 9 6 3.4741 -0.7387 4.4470 10 8 3.7436 -1.6616 5.1912 11 7 3.7328 0.5289 4.8244 12 6 4.3372 0.7950 6.1322 13 1 4.8943 -0.0565 6.5228 14 6 3.3623 1.4169 7.1484 15 6 3.8073 2.7939 6.6227 16 1 3.9406 3.5393 7.4067 17 7 3.0027 3.2827 5.5004 18 6 2.1243 4.3166 5.6868 19 1 2.0244 4.7713 6.6613 20 6 1.3622 4.7803 4.6232 21 7 0.5176 5.7736 4.8025 22 14 1.5354 3.9943 2.9374 23 1 0.5728 2.8702 2.8142 24 1 1.2520 5.0060 1.8880 25 1 2.9190 3.4817 2.7701 26 6 5.1084 2.1139 6.1948 27 6 6.3818 2.2463 7.0309 28 6 7.1603 2.0884 5.7122 29 6 5.9072 2.6206 4.9934 30 7 2.5163 -0.1096 2.2282 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9562 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6767 -1.7490 -1.2491 38 1 1.6768 -0.2076 -2.1391 39 1 3.1300 -0.7218 -1.2489 40 1 1.6399 -2.7653 0.6741 41 1 2.6788 -3.2387 3.0634 42 1 3.5181 1.2652 4.2305 43 1 3.6406 1.2359 8.1866 44 1 2.3160 1.1896 6.9443 45 1 3.0921 2.8741 4.6251 46 1 -0.0152 6.0973 4.0594 47 1 6.5008 3.2256 7.4946 48 1 6.5337 1.4239 7.7299 49 1 7.3969 1.0529 5.4669 50 1 8.0230 2.7497 5.6318 51 1 5.6801 2.0972 4.0648 52 1 5.8916 3.7049 4.8835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078639355.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:21 Heat of formation + Delta-G solvation = 105.963559 kcal Electronic energy + Delta-G solvation = -32499.478146 eV Core-core repulsion = 28502.944952 eV Total energy + Delta-G solvation = -3996.533193 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.75041 -40.66755 -38.59170 -36.97540 -35.36531 -33.68737 -32.36734 -30.94518 -30.78583 -30.15907 -27.83488 -27.59602 -25.55977 -25.24246 -24.23299 -23.68543 -22.38025 -21.59855 -20.24821 -20.15436 -19.51385 -18.67843 -17.53258 -17.17836 -16.43031 -16.11379 -15.66271 -15.21325 -14.81029 -14.78700 -14.56361 -14.40589 -14.01387 -13.85971 -13.67834 -13.63590 -12.99238 -12.83595 -12.74383 -12.63348 -12.53269 -12.33131 -12.16027 -12.08366 -11.97739 -11.88163 -11.53243 -11.47670 -11.44316 -10.99960 -10.99077 -10.73797 -10.70649 -10.26326 -10.10997 -9.84274 -9.82772 -9.62878 -9.38539 -9.23507 -9.05596 -8.87219 -8.57220 -7.30469 -5.80943 -3.17104 1.71244 2.16799 2.31745 3.29069 3.34570 3.37357 3.39179 3.62945 4.06607 4.35446 4.46752 4.53136 4.63169 4.67112 4.68507 4.88327 4.95552 5.05385 5.09729 5.12030 5.23684 5.28064 5.33188 5.35424 5.38486 5.44118 5.49528 5.56824 5.58399 5.64205 5.70117 5.76479 5.83525 5.83858 5.91245 5.97207 6.04435 6.06817 6.10285 6.19225 6.27621 6.34252 6.43768 6.57275 6.65981 6.69251 6.79160 6.87577 7.01962 7.73012 7.95901 8.04298 8.37822 8.47019 9.14940 9.87634 10.06211 11.36444 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008842 B = 0.005071 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.991500 B = 5520.226874 C = 7493.456678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.167 3.833 3 C -0.157 4.157 4 C -0.156 4.156 5 N -0.270 5.270 6 C -0.022 4.022 7 C -0.178 4.178 8 C -0.022 4.022 9 C 0.607 3.393 10 O -0.541 6.541 11 N -0.690 5.690 12 C 0.148 3.852 13 H 0.097 0.903 14 C -0.184 4.184 15 C 0.185 3.815 16 H 0.075 0.925 17 N -0.724 5.724 18 C -0.242 4.242 19 H 0.094 0.906 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.875 3.125 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.274 1.274 26 C -0.135 4.135 27 C -0.101 4.101 28 C -0.140 4.140 29 C -0.121 4.121 30 N -0.251 5.251 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.178 0.822 41 H 0.160 0.840 42 H 0.406 0.594 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.357 0.643 46 H 0.259 0.741 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.063 0.937 51 H 0.059 0.941 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.459 -14.022 -10.317 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.085 3.915 3 C -0.215 4.215 4 C -0.214 4.214 5 N -0.060 5.060 6 C -0.164 4.164 7 C -0.206 4.206 8 C -0.182 4.182 9 C 0.392 3.608 10 O -0.417 6.417 11 N -0.342 5.342 12 C 0.042 3.958 13 H 0.115 0.885 14 C -0.226 4.226 15 C 0.074 3.926 16 H 0.093 0.907 17 N -0.365 5.365 18 C -0.372 4.372 19 H 0.112 0.888 20 C -0.190 4.190 21 N -0.578 5.578 22 Si 0.705 3.295 23 H -0.207 1.207 24 H -0.217 1.217 25 H -0.201 1.201 26 C -0.137 4.137 27 C -0.139 4.139 28 C -0.177 4.177 29 C -0.159 4.159 30 N -0.087 5.087 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.195 0.805 41 H 0.178 0.822 42 H 0.244 0.756 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.191 0.809 46 H 0.069 0.931 47 H 0.106 0.894 48 H 0.086 0.914 49 H 0.093 0.907 50 H 0.082 0.918 51 H 0.077 0.923 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.424 -13.228 -10.026 17.798 hybrid contribution -0.311 -1.065 -1.508 1.872 sum 6.113 -14.293 -11.534 19.357 Atomic orbital electron populations 1.22279 0.92133 1.03371 1.04249 1.21062 0.95225 0.94015 0.81152 1.22101 1.02631 0.92657 1.04066 1.22217 1.02511 1.00953 0.95748 1.45827 1.42546 1.04748 1.12866 1.22694 1.07433 0.86340 0.99945 1.21708 1.05455 0.98561 0.94916 1.21960 1.08258 0.91649 0.96307 1.16869 0.77418 0.82934 0.83575 1.90747 1.53587 1.44081 1.53268 1.45623 1.61898 1.07667 1.18985 1.21533 0.94724 0.96103 0.83395 0.88513 1.24267 1.00069 1.00389 0.97828 1.20993 0.88141 0.92735 0.90778 0.90680 1.42499 1.47067 1.40327 1.06635 1.19112 1.13080 1.07336 0.97662 0.88811 1.24670 0.98731 0.98145 0.97454 1.69693 1.28281 1.28670 1.31162 0.86690 0.78107 0.78690 0.86003 1.20665 1.21707 1.20051 1.23487 0.95126 0.96704 0.98432 1.22470 0.93418 1.02112 0.95914 1.22846 0.96967 1.00902 0.97023 1.22557 0.95235 1.01343 0.96721 1.73583 1.13204 1.26390 0.95491 0.91061 0.89833 0.91443 0.91102 0.90243 0.90620 0.91319 0.89676 0.91263 0.80531 0.82202 0.75615 0.89854 0.90763 0.80871 0.93093 0.89410 0.91424 0.90722 0.91812 0.92252 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.70 37.16 0.32 -1.24 16 2 C 0.17 1.78 1.21 -131.82 -0.16 1.63 16 3 C -0.16 -1.96 8.01 37.16 0.30 -1.66 16 4 C -0.16 -1.10 8.27 37.16 0.31 -0.79 16 5 N -0.27 -3.64 3.16 -48.61 -0.15 -3.80 16 6 C -0.02 -0.25 10.52 -17.17 -0.18 -0.43 16 7 C -0.18 -2.51 10.81 -39.36 -0.43 -2.93 16 8 C -0.02 -0.38 7.13 -82.77 -0.59 -0.97 16 9 C 0.61 11.48 7.82 -12.39 -0.10 11.38 16 10 O -0.54 -11.01 16.52 5.30 0.09 -10.92 16 11 N -0.69 -12.86 4.69 -54.35 -0.25 -13.11 16 12 C 0.15 2.55 4.12 -67.48 -0.28 2.27 16 13 H 0.10 1.64 7.46 -51.93 -0.39 1.25 16 14 C -0.18 -3.30 7.68 -25.75 -0.20 -3.50 16 15 C 0.19 3.59 4.36 -67.48 -0.29 3.30 16 16 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 17 N -0.72 -16.97 4.78 -52.99 -0.25 -17.22 16 18 C -0.24 -6.76 10.45 -15.05 -0.16 -6.91 16 19 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.98 13.97 55.49 0.78 -28.21 16 22 Si 0.87 21.88 25.88 -169.99 -4.40 17.48 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.27 -6.47 6.52 56.52 0.37 -6.10 16 26 C -0.14 -2.18 0.78 -154.71 -0.12 -2.30 16 27 C -0.10 -1.32 7.84 -26.28 -0.21 -1.53 16 28 C -0.14 -1.81 8.08 -25.75 -0.21 -2.02 16 29 C -0.12 -1.92 7.27 -26.28 -0.19 -2.11 16 30 N -0.25 -4.29 10.62 33.42 0.35 -3.94 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.22 5.98 -51.93 -0.31 0.91 16 37 H 0.07 0.38 7.27 -51.93 -0.38 0.01 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.18 1.29 7.47 -52.48 -0.39 0.90 16 41 H 0.16 1.99 8.06 -52.48 -0.42 1.57 16 42 H 0.41 8.04 5.67 -40.82 -0.23 7.81 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 45 H 0.36 8.31 3.20 -40.82 -0.13 8.18 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 50 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.06 0.98 7.58 -51.93 -0.39 0.59 16 52 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 410.06 15.07 6.18 6.18 Total: -1.00 -33.77 410.06 -8.51 -42.29 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -8.58 Total: 19.00 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.27 Total: -7.75 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: 0.47 Total: -66.28 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.40 Total: 17.48 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.77 -8.51 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078639355.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.253 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds