Wall clock time and date at job start Wed Apr 1 2020 05:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46898 * 2 1 4 4 C 1.53003 * 109.46951 * 239.99902 * 2 1 3 5 5 N 1.46500 * 109.47262 * 120.00236 * 2 1 3 6 6 C 1.35031 * 124.88418 * 74.99383 * 5 2 1 7 7 C 1.35367 * 107.22543 * 179.76759 * 6 5 2 8 8 C 1.41494 * 105.50576 * 0.23337 * 7 6 5 9 9 C 1.47709 * 126.52007 * 179.97438 * 8 7 6 10 10 O 1.21576 * 119.99931 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00121 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99818 * 180.02562 * 11 9 8 13 13 H 1.08998 * 112.88873 * 26.84159 * 12 11 9 14 14 C 1.53956 * 113.66141 * 255.49337 * 12 11 9 15 15 C 1.53949 * 87.29614 * 270.26664 * 14 12 11 16 16 H 1.08993 * 113.66457 * 89.74093 * 15 14 12 17 17 N 1.46505 * 113.66287 * 220.70439 * 15 14 12 18 18 C 1.36942 * 119.99423 * 255.49641 * 17 15 14 19 19 H 1.07991 * 120.00407 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99271 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00510 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99571 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47091 * 90.00080 * 22 20 18 24 24 H 1.48497 * 109.46969 * 210.00254 * 22 20 18 25 25 H 1.48503 * 109.47094 * 329.99905 * 22 20 18 26 26 C 1.52908 * 86.78274 * 335.26333 * 15 14 12 27 27 C 1.52911 * 121.13423 * 150.62386 * 26 15 14 28 28 C 1.53948 * 86.78148 * 100.82011 * 27 26 15 29 29 C 1.52906 * 121.13705 * 259.17983 * 26 15 14 30 30 N 1.28472 * 124.88401 * 255.18053 * 5 2 1 31 31 H 1.09002 * 109.46658 * 299.99697 * 1 2 3 32 32 H 1.08998 * 109.47543 * 59.99854 * 1 2 3 33 33 H 1.08997 * 109.47512 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46408 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47276 * 299.99851 * 3 2 1 36 36 H 1.08995 * 109.46938 * 60.00414 * 3 2 1 37 37 H 1.08997 * 109.46921 * 300.00250 * 4 2 1 38 38 H 1.09007 * 109.46676 * 59.99921 * 4 2 1 39 39 H 1.09000 * 109.47078 * 179.97438 * 4 2 1 40 40 H 1.08002 * 126.38961 * 0.04238 * 6 5 2 41 41 H 1.08007 * 127.24670 * 180.20555 * 7 6 5 42 42 H 0.97003 * 119.99961 * 0.02562 * 11 9 8 43 43 H 1.09000 * 113.58220 * 24.86703 * 14 12 11 44 44 H 1.08998 * 113.57925 * 155.58738 * 14 12 11 45 45 H 0.96999 * 120.00306 * 75.49228 * 17 15 14 46 46 H 0.96999 * 120.00112 * 180.02562 * 21 20 18 47 47 H 1.09002 * 113.66127 * 215.28790 * 27 26 15 48 48 H 1.08994 * 113.66601 * 346.34338 * 27 26 15 49 49 H 1.09006 * 113.57474 * 270.12939 * 28 27 26 50 50 H 1.08997 * 113.65455 * 139.35090 * 28 27 26 51 51 H 1.08999 * 113.65884 * 13.66173 * 29 26 15 52 52 H 1.09000 * 113.66288 * 144.70918 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0054 -2.0291 1.3745 7 6 2.5404 -2.2763 2.5931 8 6 2.8657 -1.0073 3.1279 9 6 3.4784 -0.7393 4.4450 10 8 3.7524 -1.6625 5.1871 11 7 3.7337 0.5286 4.8240 12 6 4.3420 0.7943 6.1300 13 1 4.9491 -0.0355 6.4916 14 6 3.3495 1.3353 7.1752 15 6 3.7101 2.7476 6.6799 16 1 3.0801 3.0988 5.8628 17 7 3.8474 3.7313 7.7568 18 6 2.8590 4.6547 7.9706 19 1 1.9787 4.6581 7.3450 20 6 2.9888 5.5864 8.9914 21 7 4.0614 5.5820 9.7541 22 14 1.6409 6.8466 9.2825 23 1 0.6509 6.2992 10.2446 24 1 2.2361 8.0887 9.8376 25 1 0.9643 7.1537 7.9968 26 6 5.0402 2.1520 6.2170 27 6 5.7922 2.7326 5.0188 28 6 6.6983 3.4419 6.0415 29 6 6.3166 2.3334 7.0392 30 7 2.5175 -0.1098 2.2277 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2492 38 1 1.6766 -0.2074 -2.1393 39 1 3.1300 -0.7209 -1.2495 40 1 1.6407 -2.7654 0.6735 41 1 2.6876 -3.2394 3.0593 42 1 3.5147 1.2652 4.2320 43 1 2.3143 1.0557 6.9793 44 1 3.6520 1.1424 8.2045 45 1 4.6382 3.7284 8.3185 46 1 4.1519 6.2328 10.4676 47 1 6.3103 1.9820 4.4219 48 1 5.1940 3.4160 4.4162 49 1 6.3400 4.4302 6.3297 50 1 7.7533 3.4379 5.7678 51 1 6.1372 2.6979 8.0506 52 1 6.9820 1.4706 7.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078639356.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:26 Heat of formation + Delta-G solvation = 96.888508 kcal Electronic energy + Delta-G solvation = -31075.515363 eV Core-core repulsion = 27078.588646 eV Total energy + Delta-G solvation = -3996.926717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.89498 -40.47329 -38.67036 -37.14137 -34.92534 -33.97050 -32.29197 -31.08907 -30.79810 -29.65013 -28.01910 -27.76883 -25.42913 -25.10404 -24.07436 -23.92176 -22.29621 -21.69227 -20.57226 -20.06532 -19.52889 -18.11073 -17.68150 -16.90508 -16.54283 -16.26498 -15.77826 -15.11574 -14.79872 -14.74981 -14.64128 -14.42126 -14.01272 -13.97893 -13.69114 -13.56710 -13.15019 -12.90887 -12.82945 -12.54721 -12.50569 -12.41653 -12.30200 -11.94203 -11.73564 -11.67679 -11.65307 -11.60970 -11.28652 -10.92386 -10.85820 -10.77157 -10.55107 -10.14023 -10.11156 -9.92373 -9.73659 -9.56867 -9.37098 -9.33425 -9.19009 -8.80346 -8.55391 -6.92535 -5.76398 -3.04369 1.57114 2.04369 2.15263 3.32798 3.44079 3.49441 3.50711 3.54379 3.89355 4.17519 4.28293 4.52948 4.54335 4.60062 4.86588 4.88825 4.95015 5.06783 5.09614 5.13438 5.16447 5.18590 5.27778 5.29873 5.33420 5.34179 5.40870 5.51329 5.57128 5.61619 5.65650 5.75925 5.80387 5.91989 6.02303 6.08674 6.13152 6.18446 6.25181 6.31179 6.37306 6.49981 6.60352 6.63153 6.64573 6.75782 6.94362 7.00950 7.15045 7.64721 7.71913 7.92429 8.41995 8.42787 9.54190 10.12176 10.47378 11.46019 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.002694 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.802282 B =10392.225653 C =11384.122766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.159 4.159 5 N -0.272 5.272 6 C -0.022 4.022 7 C -0.179 4.179 8 C -0.017 4.017 9 C 0.604 3.396 10 O -0.538 6.538 11 N -0.689 5.689 12 C 0.130 3.870 13 H 0.095 0.905 14 C -0.174 4.174 15 C 0.192 3.808 16 H 0.074 0.926 17 N -0.708 5.708 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.119 4.119 27 C -0.126 4.126 28 C -0.131 4.131 29 C -0.110 4.110 30 N -0.254 5.254 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.177 0.823 41 H 0.160 0.840 42 H 0.406 0.594 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.387 0.613 46 H 0.255 0.745 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.089 0.911 50 H 0.056 0.944 51 H 0.079 0.921 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 -13.542 -24.215 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.086 3.914 3 C -0.206 4.206 4 C -0.217 4.217 5 N -0.062 5.062 6 C -0.164 4.164 7 C -0.207 4.207 8 C -0.177 4.177 9 C 0.388 3.612 10 O -0.414 6.414 11 N -0.339 5.339 12 C 0.024 3.976 13 H 0.113 0.887 14 C -0.216 4.216 15 C 0.079 3.921 16 H 0.092 0.908 17 N -0.348 5.348 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.121 4.121 27 C -0.163 4.163 28 C -0.169 4.169 29 C -0.148 4.148 30 N -0.090 5.090 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.194 0.806 41 H 0.178 0.822 42 H 0.241 0.759 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.223 0.777 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.108 0.892 50 H 0.075 0.925 51 H 0.098 0.902 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.516 -12.817 -23.954 27.284 hybrid contribution -0.720 0.040 0.238 0.760 sum -3.236 -12.778 -23.716 27.133 Atomic orbital electron populations 1.22259 0.92207 1.03396 1.03962 1.21053 0.95076 0.94141 0.81174 1.21980 1.02509 0.92373 1.03757 1.22235 1.02570 1.01058 0.95821 1.45800 1.42731 1.04734 1.12936 1.22691 1.07393 0.86391 0.99958 1.21756 1.05209 0.98782 0.94987 1.21994 1.07848 0.91571 0.96253 1.16877 0.77717 0.83133 0.83460 1.90778 1.53200 1.44129 1.53261 1.45453 1.61925 1.07348 1.19126 1.21741 0.95889 0.97036 0.82913 0.88663 1.24265 0.98360 1.00351 0.98621 1.21278 0.91384 0.87946 0.91453 0.90809 1.42398 1.23017 1.34408 1.34937 1.19281 0.98440 1.07326 1.12188 0.91220 1.24728 0.97726 0.99719 0.98607 1.69650 1.27800 1.38480 1.22071 0.86216 0.81231 0.81089 0.77802 1.21752 1.21828 1.20809 1.23514 0.95991 0.94758 0.97838 1.22642 0.98484 0.99250 0.95960 1.22744 0.98292 0.99221 0.96614 1.22456 0.94650 0.98344 0.99306 1.73488 1.13660 1.26390 0.95466 0.91184 0.89953 0.91570 0.91289 0.90564 0.90409 0.91357 0.89730 0.91260 0.80620 0.82241 0.75933 0.92312 0.89530 0.77698 0.93493 0.90936 0.91732 0.89228 0.92495 0.90239 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 8.70 37.16 0.32 -0.52 16 2 C 0.17 1.07 1.21 -131.81 -0.16 0.91 16 3 C -0.15 -1.00 8.01 37.16 0.30 -0.70 16 4 C -0.16 -0.66 8.27 37.16 0.31 -0.35 16 5 N -0.27 -2.61 3.16 -48.61 -0.15 -2.76 16 6 C -0.02 -0.20 10.52 -17.17 -0.18 -0.38 16 7 C -0.18 -2.10 10.81 -39.37 -0.43 -2.53 16 8 C -0.02 -0.23 7.13 -82.77 -0.59 -0.82 16 9 C 0.60 9.85 7.82 -12.39 -0.10 9.75 16 10 O -0.54 -10.30 16.57 5.30 0.09 -10.21 16 11 N -0.69 -10.58 5.07 -54.35 -0.28 -10.86 16 12 C 0.13 2.16 4.08 -67.48 -0.28 1.88 16 13 H 0.10 1.66 7.54 -51.93 -0.39 1.27 16 14 C -0.17 -3.28 7.68 -25.75 -0.20 -3.48 16 15 C 0.19 3.82 4.27 -67.48 -0.29 3.53 16 16 H 0.07 1.48 8.12 -51.93 -0.42 1.06 16 17 N -0.71 -17.42 5.36 -52.99 -0.28 -17.70 16 18 C -0.24 -6.63 9.98 -15.06 -0.15 -6.78 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 22 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C -0.12 -1.98 0.91 -154.71 -0.14 -2.13 16 27 C -0.13 -1.89 7.43 -26.28 -0.20 -2.08 16 28 C -0.13 -2.09 8.08 -25.76 -0.21 -2.30 16 29 C -0.11 -1.81 7.45 -26.29 -0.20 -2.01 16 30 N -0.25 -3.18 10.62 33.42 0.35 -2.82 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.65 7.99 -51.93 -0.42 0.23 16 37 H 0.07 0.22 7.27 -51.93 -0.38 -0.16 16 38 H 0.08 0.20 8.14 -51.92 -0.42 -0.22 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.18 0.90 7.47 -52.49 -0.39 0.51 16 41 H 0.16 1.72 8.06 -52.48 -0.42 1.30 16 42 H 0.41 5.80 8.27 -40.82 -0.34 5.46 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 45 H 0.39 10.02 5.87 -40.82 -0.24 9.78 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 50 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.08 1.49 6.43 -51.93 -0.33 1.16 16 52 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 419.70 15.07 6.32 6.32 Total: -1.00 -32.88 419.70 -9.31 -42.20 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -8.80 Total: 14.05 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -2.27 Total: -8.42 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.37 Total: -61.28 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.88 -9.31 -42.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078639356.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.084 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds