Wall clock time and date at job start Wed Apr 1 2020 05:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46901 * 2 1 4 4 C 1.53002 * 109.47126 * 119.99475 * 2 1 3 5 5 N 1.46494 * 109.47098 * 65.69354 * 4 2 1 6 6 N 1.28447 * 125.19181 * 265.02819 * 5 4 2 7 7 C 1.30868 * 110.92763 * 180.27560 * 6 5 4 8 8 C 1.39673 * 107.85958 * 359.71870 * 7 6 5 9 9 C 1.36603 * 125.19024 * 84.81331 * 5 4 2 10 10 C 1.47158 * 126.88695 * 0.02562 * 9 5 4 11 11 O 1.21625 * 120.00113 * 175.48882 * 10 9 5 12 12 N 1.34776 * 119.99828 * 355.49801 * 10 9 5 13 13 C 1.46505 * 120.00270 * 175.72417 * 12 10 9 14 14 H 1.09004 * 112.94535 * 34.00012 * 13 12 10 15 15 C 1.53949 * 113.66377 * 165.40689 * 13 12 10 16 16 C 1.53951 * 87.29511 * 89.73984 * 15 13 12 17 17 H 1.08992 * 113.66735 * 139.30400 * 16 15 13 18 18 N 1.46506 * 113.66028 * 270.26252 * 16 15 13 19 19 C 1.36936 * 120.00043 * 267.21961 * 18 16 15 20 20 H 1.07999 * 119.99600 * 14.49854 * 19 18 16 21 21 C 1.38812 * 119.99850 * 194.50089 * 19 18 16 22 22 N 1.31628 * 119.99645 * 193.84465 * 21 19 18 23 23 Si 1.86792 * 120.00287 * 13.84484 * 21 19 18 24 24 H 1.48500 * 109.47031 * 95.66260 * 23 21 19 25 25 H 1.48497 * 109.47375 * 215.66015 * 23 21 19 26 26 H 1.48501 * 109.47112 * 335.66260 * 23 21 19 27 27 C 1.52909 * 86.78420 * 24.73104 * 16 15 13 28 28 C 1.52908 * 121.14389 * 209.38004 * 27 16 15 29 29 C 1.53952 * 86.78072 * 209.38020 * 28 27 16 30 30 C 1.52909 * 121.13630 * 100.81588 * 27 16 15 31 31 H 1.08998 * 109.47425 * 60.00637 * 1 2 3 32 32 H 1.09000 * 109.46598 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47122 * 299.99712 * 1 2 3 34 34 H 1.08995 * 109.47569 * 239.99869 * 2 1 3 35 35 H 1.09002 * 109.47211 * 185.40155 * 3 2 1 36 36 H 1.09010 * 109.46982 * 305.39702 * 3 2 1 37 37 H 1.08995 * 109.47457 * 65.39902 * 3 2 1 38 38 H 1.09001 * 109.47233 * 305.69063 * 4 2 1 39 39 H 1.09000 * 109.46749 * 185.68919 * 4 2 1 40 40 H 1.07994 * 126.06595 * 179.67930 * 7 6 5 41 41 H 1.08001 * 127.31559 * 179.97438 * 8 7 6 42 42 H 0.97003 * 120.00242 * 355.71893 * 12 10 9 43 43 H 1.08998 * 113.57932 * 335.13399 * 15 13 12 44 44 H 1.08998 * 113.64960 * 204.34916 * 15 13 12 45 45 H 0.96998 * 119.99845 * 86.94633 * 18 16 15 46 46 H 0.96994 * 119.99459 * 179.97438 * 22 21 19 47 47 H 1.09002 * 113.65980 * 323.85276 * 28 27 16 48 48 H 1.08996 * 113.66263 * 94.90607 * 28 27 16 49 49 H 1.09004 * 113.57882 * 270.12589 * 29 28 27 50 50 H 1.08997 * 113.65087 * 139.35418 * 29 28 27 51 51 H 1.09006 * 113.66494 * 265.10001 * 30 27 16 52 52 H 1.09001 * 113.66035 * 36.15573 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6668 -2.1362 1.1829 6 7 0.6200 -2.6517 1.7199 7 6 0.5635 -3.9391 1.4921 8 6 1.6796 -4.2884 0.7284 9 6 2.3767 -3.1081 0.5369 10 6 3.6344 -2.9360 -0.2076 11 8 4.2060 -3.9058 -0.6682 12 7 4.1529 -1.7039 -0.3789 13 6 5.4511 -1.5405 -1.0379 14 1 5.6265 -2.2789 -1.8203 15 6 5.7438 -0.0941 -1.4764 16 6 6.3799 0.1200 -0.0909 17 1 7.2963 0.7095 -0.1166 18 7 5.4325 0.5839 0.9257 19 6 5.2757 1.9249 1.1544 20 1 5.6608 2.6422 0.4449 21 6 4.6219 2.3621 2.2982 22 7 4.2290 3.6147 2.3934 23 14 4.2997 1.1729 3.7022 24 1 5.3778 1.2996 4.7155 25 1 2.9915 1.4899 4.3291 26 1 4.2739 -0.2164 3.1781 27 6 6.6195 -1.3900 -0.0630 28 6 6.6523 -2.1612 1.2570 29 6 7.6212 -3.1359 0.5633 30 6 7.9947 -1.9783 -0.3803 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.1257 1.4441 -0.0967 36 1 1.5998 1.9835 -0.8378 37 1 1.7577 1.9277 0.9343 38 1 1.5959 -0.2694 2.1364 39 1 3.1252 -0.6337 1.3016 40 1 -0.2087 -4.6121 1.8343 41 1 1.9429 -5.2707 0.3650 42 1 3.6665 -0.9251 -0.0660 43 1 4.8460 0.5018 -1.6408 44 1 6.4555 -0.0220 -2.2988 45 1 4.9134 -0.0588 1.4341 46 1 3.7718 3.9201 3.1925 47 1 7.1047 -1.6045 2.0777 48 1 5.6963 -2.6110 1.5247 49 1 7.1212 -3.9640 0.0609 50 1 8.4435 -3.4622 1.1999 51 1 8.1111 -2.2822 -1.4207 52 1 8.8244 -1.3703 -0.0197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078640005.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:31 Heat of formation + Delta-G solvation = 109.851809 kcal Electronic energy + Delta-G solvation = -34147.428505 eV Core-core repulsion = 30151.063919 eV Total energy + Delta-G solvation = -3996.364586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.60996 -40.82364 -38.57061 -36.81327 -35.40929 -33.95157 -32.60945 -31.85665 -30.91622 -30.26385 -27.07947 -26.50391 -25.56910 -25.19971 -24.24542 -23.35236 -21.92144 -21.51586 -20.90107 -20.34298 -19.81885 -18.38742 -17.89751 -17.43493 -16.10429 -15.93137 -15.65829 -15.40032 -15.28483 -15.04048 -14.75986 -14.15995 -14.01736 -13.90639 -13.80522 -13.45029 -13.10157 -12.91381 -12.65349 -12.54844 -12.28308 -12.12734 -12.06650 -11.90224 -11.70995 -11.55895 -11.34378 -11.23922 -11.04984 -10.83112 -10.79925 -10.68441 -10.60954 -10.43948 -10.29984 -10.11259 -9.96187 -9.77318 -9.30669 -9.17550 -9.04725 -8.97218 -8.73921 -7.42834 -6.03591 -3.39292 1.31203 2.43518 2.66325 3.09049 3.12213 3.21554 3.28835 3.30359 4.30513 4.35470 4.57003 4.62874 4.66738 4.80952 4.86274 4.92549 4.98297 5.01680 5.11802 5.15379 5.23556 5.41309 5.43678 5.49204 5.55232 5.61133 5.62941 5.72006 5.79907 5.84649 5.87350 5.88774 5.98466 6.00306 6.04782 6.07022 6.18050 6.19572 6.25787 6.26841 6.37737 6.46795 6.49818 6.53124 6.63780 6.69894 6.75064 6.83540 6.97295 7.54691 7.84394 8.04824 8.18844 8.21712 8.98257 9.68354 9.91209 11.13030 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008070 B = 0.007204 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3468.713575 B = 3886.003065 C = 5811.315252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.155 4.155 4 C 0.098 3.902 5 N -0.265 5.265 6 N -0.269 5.269 7 C -0.013 4.013 8 C -0.161 4.161 9 C -0.046 4.046 10 C 0.590 3.410 11 O -0.526 6.526 12 N -0.709 5.709 13 C 0.147 3.853 14 H 0.094 0.906 15 C -0.174 4.174 16 C 0.178 3.822 17 H 0.070 0.930 18 N -0.730 5.730 19 C -0.250 4.250 20 H 0.094 0.906 21 C 0.025 3.975 22 N -0.911 5.911 23 Si 0.856 3.144 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.283 1.283 27 C -0.132 4.132 28 C -0.120 4.120 29 C -0.138 4.138 30 C -0.102 4.102 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.186 0.814 41 H 0.162 0.838 42 H 0.409 0.591 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.359 0.641 46 H 0.262 0.738 47 H 0.082 0.918 48 H 0.055 0.945 49 H 0.080 0.920 50 H 0.061 0.939 51 H 0.067 0.933 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 -10.838 -5.865 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 C -0.212 4.212 4 C -0.022 4.022 5 N -0.055 5.055 6 N -0.102 5.102 7 C -0.189 4.189 8 C -0.190 4.190 9 C -0.173 4.173 10 C 0.375 3.625 11 O -0.402 6.402 12 N -0.366 5.366 13 C 0.042 3.958 14 H 0.112 0.888 15 C -0.215 4.215 16 C 0.068 3.932 17 H 0.087 0.913 18 N -0.372 5.372 19 C -0.379 4.379 20 H 0.112 0.888 21 C -0.173 4.173 22 N -0.556 5.556 23 Si 0.686 3.314 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.210 1.210 27 C -0.135 4.135 28 C -0.158 4.158 29 C -0.176 4.176 30 C -0.140 4.140 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.203 0.797 41 H 0.180 0.820 42 H 0.252 0.748 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.194 0.806 46 H 0.072 0.928 47 H 0.101 0.899 48 H 0.073 0.927 49 H 0.099 0.901 50 H 0.080 0.920 51 H 0.086 0.914 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.227 -10.178 -5.618 11.837 hybrid contribution -0.263 -1.131 1.074 1.582 sum -2.490 -11.309 -4.544 12.439 Atomic orbital electron populations 1.21834 0.93996 1.01959 1.02386 1.21653 0.97572 0.98614 0.95538 1.21978 1.04648 0.91763 1.02825 1.22759 1.02193 0.74762 1.02476 1.46026 1.15323 1.08472 1.35641 1.73169 1.06699 1.11837 1.18509 1.23586 1.00613 0.91619 1.03044 1.22116 0.95853 0.97833 1.03221 1.21830 0.98373 0.90667 1.06449 1.17007 0.82490 0.83753 0.79233 1.90783 1.60800 1.39159 1.49429 1.46388 1.21465 1.08406 1.60361 1.21557 0.81251 0.98897 0.94125 0.88841 1.24063 1.02444 0.94057 1.00945 1.21092 0.92759 0.91021 0.88369 0.91254 1.42706 1.45843 1.04953 1.43740 1.18977 1.33011 0.81643 1.04284 0.88846 1.24788 1.00335 0.95099 0.97085 1.69720 1.42448 1.14674 1.28725 0.87099 0.78011 0.80697 0.85597 1.20806 1.21316 1.21042 1.23411 0.95798 0.97385 0.96876 1.22502 0.99329 0.97342 0.96587 1.22833 0.99061 0.97017 0.98651 1.22467 0.94994 0.96963 0.99585 0.92114 0.92712 0.92011 0.90908 0.88597 0.92222 0.91537 0.87104 0.87447 0.79693 0.82046 0.74788 0.90419 0.89217 0.80648 0.92764 0.89945 0.92667 0.90088 0.92004 0.91429 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.06 37.16 0.34 -1.61 16 2 C -0.11 -1.71 2.35 -90.62 -0.21 -1.92 16 3 C -0.15 -2.53 9.19 37.16 0.34 -2.19 16 4 C 0.10 1.64 4.87 -4.04 -0.02 1.62 16 5 N -0.26 -4.33 2.95 -57.14 -0.17 -4.50 16 6 N -0.27 -4.22 11.18 30.59 0.34 -3.88 16 7 C -0.01 -0.17 12.03 -17.43 -0.21 -0.38 16 8 C -0.16 -2.30 10.85 -38.98 -0.42 -2.73 16 9 C -0.05 -0.76 6.96 -82.06 -0.57 -1.33 16 10 C 0.59 10.22 7.06 -12.64 -0.09 10.13 16 11 O -0.53 -9.89 16.64 5.26 0.09 -9.80 16 12 N -0.71 -11.64 3.92 -54.53 -0.21 -11.85 16 13 C 0.15 2.26 4.00 -67.48 -0.27 1.99 16 14 H 0.09 1.42 7.68 -51.93 -0.40 1.02 16 15 C -0.17 -2.59 7.60 -25.75 -0.20 -2.78 16 16 C 0.18 3.04 4.33 -67.48 -0.29 2.75 16 17 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 18 N -0.73 -14.69 4.02 -52.99 -0.21 -14.90 16 19 C -0.25 -5.93 8.90 -15.06 -0.13 -6.06 16 20 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 21 C 0.02 0.63 5.50 -17.43 -0.10 0.53 16 22 N -0.91 -24.94 13.97 55.49 0.78 -24.17 16 23 Si 0.86 20.02 27.93 -169.99 -4.75 15.27 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.29 5.56 56.52 0.31 -5.98 16 27 C -0.13 -2.02 0.82 -154.71 -0.13 -2.15 16 28 C -0.12 -1.95 7.08 -26.28 -0.19 -2.13 16 29 C -0.14 -1.89 8.08 -25.75 -0.21 -2.10 16 30 C -0.10 -1.31 7.84 -26.29 -0.21 -1.51 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.76 7.17 -51.93 -0.37 0.39 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.08 7.38 -51.93 -0.38 0.70 16 35 H 0.10 1.78 6.36 -51.93 -0.33 1.45 16 36 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 39 H 0.11 1.96 3.27 -51.93 -0.17 1.79 16 40 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 42 H 0.41 6.77 2.36 -40.82 -0.10 6.67 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.36 7.37 2.97 -40.82 -0.12 7.25 16 46 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.05 0.99 7.09 -51.93 -0.37 0.62 16 49 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 52 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -27.51 399.52 -8.91 -36.42 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -8.23 Total: 21.27 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.56 Total: -9.88 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.52 Total: -59.30 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.75 Total: 15.27 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -27.51 -8.91 -36.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078640005.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.273 kcal (2) G-P(sol) polarization free energy of solvation -27.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds