Wall clock time and date at job start Wed Apr 1 2020 05:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53009 * 109.47043 * 2 1 4 4 C 1.53003 * 109.47324 * 119.99733 * 2 1 3 5 5 N 1.46497 * 109.46772 * 65.00447 * 4 2 1 6 6 N 1.28449 * 125.18658 * 264.44978 * 5 4 2 7 7 C 1.30861 * 110.92427 * 179.97438 * 6 5 4 8 8 C 1.39679 * 107.86653 * 359.77760 * 7 6 5 9 9 C 1.36595 * 125.19327 * 84.42998 * 5 4 2 10 10 C 1.47162 * 126.88352 * 359.97438 * 9 5 4 11 11 O 1.21631 * 120.00146 * 5.52599 * 10 9 5 12 12 N 1.34776 * 120.00117 * 185.52137 * 10 9 5 13 13 C 1.46500 * 119.99939 * 174.78948 * 12 10 9 14 14 H 1.08997 * 112.88876 * 336.34442 * 13 12 10 15 15 C 1.53956 * 113.66181 * 107.81839 * 13 12 10 16 16 C 1.53948 * 87.29680 * 139.20540 * 15 13 12 17 17 H 1.09001 * 113.65705 * 220.79664 * 16 15 13 18 18 N 1.46495 * 113.66787 * 89.73646 * 16 15 13 19 19 C 1.36938 * 119.99992 * 107.81069 * 18 16 15 20 20 H 1.07995 * 120.00136 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99795 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00156 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00046 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47149 * 59.99459 * 23 21 19 25 25 H 1.48496 * 109.47281 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47100 * 299.99877 * 23 21 19 27 27 C 1.52911 * 86.78220 * 335.26460 * 16 15 13 28 28 C 1.52914 * 121.13498 * 259.18698 * 27 16 15 29 29 C 1.53956 * 86.77788 * 209.37786 * 28 27 16 30 30 C 1.52906 * 121.14014 * 150.61983 * 27 16 15 31 31 H 1.08994 * 109.47582 * 300.00135 * 1 2 3 32 32 H 1.09002 * 109.47510 * 60.00344 * 1 2 3 33 33 H 1.09002 * 109.47128 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47584 * 239.99939 * 2 1 3 35 35 H 1.08998 * 109.46912 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.46686 * 300.00160 * 3 2 1 37 37 H 1.08994 * 109.47041 * 59.99534 * 3 2 1 38 38 H 1.08997 * 109.46929 * 305.00193 * 4 2 1 39 39 H 1.08997 * 109.47103 * 185.00189 * 4 2 1 40 40 H 1.08001 * 126.06861 * 179.97438 * 7 6 5 41 41 H 1.07991 * 127.32503 * 180.23249 * 8 7 6 42 42 H 0.97005 * 119.99883 * 354.78494 * 12 10 9 43 43 H 1.09000 * 113.58218 * 24.59388 * 15 13 12 44 44 H 1.09006 * 113.57506 * 253.80976 * 15 13 12 45 45 H 0.97003 * 120.00363 * 287.81655 * 18 16 15 46 46 H 0.97000 * 120.00033 * 180.02562 * 22 21 19 47 47 H 1.09001 * 113.66079 * 323.84253 * 28 27 16 48 48 H 1.08998 * 113.66503 * 94.90909 * 28 27 16 49 49 H 1.08994 * 113.58203 * 270.12768 * 29 28 27 50 50 H 1.09004 * 113.64558 * 139.34469 * 29 28 27 51 51 H 1.08997 * 113.66541 * 265.09493 * 30 27 16 52 52 H 1.09001 * 113.66107 * 36.05602 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1906 6 7 0.6093 -2.6376 1.7444 7 6 0.5338 -3.9236 1.5139 8 6 1.6329 -4.2838 0.7309 9 6 2.3452 -3.1128 0.5382 10 6 3.5947 -2.9541 -0.2228 11 8 4.1680 -1.8815 -0.2339 12 7 4.1040 -3.9975 -0.9073 13 6 5.2834 -3.8111 -1.7561 14 1 5.4122 -2.7791 -2.0823 15 6 6.5639 -4.4444 -1.1823 16 6 6.8931 -4.9008 -2.6153 17 1 7.3014 -5.9099 -2.6700 18 7 7.6763 -3.9255 -3.3778 19 6 8.9962 -4.1692 -3.6492 20 1 9.4599 -5.0802 -3.3008 21 6 9.7385 -3.2448 -4.3713 22 7 9.1736 -2.1343 -4.7954 23 14 11.5388 -3.5776 -4.7421 24 1 11.6583 -4.8294 -5.5321 25 1 12.1012 -2.4455 -5.5214 26 1 12.2880 -3.7228 -3.4683 27 6 5.3905 -4.8310 -2.8904 28 6 4.5293 -6.0944 -2.9015 29 6 3.6273 -5.3660 -3.9145 30 6 4.8564 -4.5177 -4.2884 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6765 1.9564 -0.8900 37 1 1.6765 1.9564 0.8899 38 1 1.6053 -0.2617 2.1369 39 1 3.1263 -0.6442 1.2952 40 1 -0.2425 -4.5878 1.8640 41 1 1.8765 -5.2673 0.3572 42 1 3.6896 -4.8718 -0.8379 43 1 6.3727 -5.2686 -0.4952 44 1 7.2699 -3.7156 -0.7838 45 1 7.2601 -3.1070 -3.6904 46 1 9.6922 -1.4885 -5.3003 47 1 5.0365 -6.9660 -3.3152 48 1 4.0407 -6.2993 -1.9490 49 1 2.8259 -4.7914 -3.4503 50 1 3.2753 -6.0045 -4.7248 51 1 4.6292 -3.4630 -4.4438 52 1 5.4565 -4.9448 -5.0919 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078640006.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:37 Heat of formation + Delta-G solvation = 90.237548 kcal Electronic energy + Delta-G solvation = -31503.862100 eV Core-core repulsion = 27506.646975 eV Total energy + Delta-G solvation = -3997.215124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.70292 -40.63554 -38.68458 -36.72011 -35.11034 -34.16885 -32.63598 -32.10066 -30.92221 -29.50016 -27.39273 -26.74972 -25.58573 -24.96754 -24.21308 -23.44241 -22.40399 -21.43168 -20.88883 -20.16199 -19.88587 -18.56864 -17.43204 -17.06508 -16.36732 -16.16356 -15.81077 -15.35410 -15.19910 -14.92426 -14.69244 -14.38572 -14.24045 -14.01987 -13.73836 -13.44453 -13.08744 -12.92887 -12.72852 -12.50378 -12.46106 -12.20597 -12.13457 -11.98331 -11.75903 -11.56016 -11.54401 -11.22688 -10.98069 -10.94623 -10.94238 -10.84602 -10.68145 -10.26657 -10.12860 -10.01372 -9.92074 -9.61603 -9.48081 -9.33419 -9.17175 -8.85119 -8.70909 -7.00054 -5.80071 -3.09655 1.17852 2.24607 2.47426 3.19129 3.24187 3.42458 3.47145 3.48048 4.31051 4.49636 4.50616 4.53647 4.68283 4.70014 4.80138 4.83824 4.91753 5.00384 5.11358 5.12004 5.28711 5.29748 5.38282 5.40791 5.41272 5.49925 5.54035 5.60552 5.61021 5.70969 5.73992 5.86765 5.87666 5.95626 5.97849 6.02885 6.03556 6.06536 6.07641 6.18340 6.31291 6.35431 6.45483 6.57004 6.59931 6.67117 6.72001 6.80248 7.03293 7.51867 7.68056 7.92652 8.18172 8.38111 9.49233 10.05674 10.40041 11.41851 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.002810 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.338304 B = 9961.057132 C =11018.940572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.143 4.143 4 C 0.120 3.880 5 N -0.250 5.250 6 N -0.278 5.278 7 C -0.007 4.007 8 C -0.195 4.195 9 C -0.032 4.032 10 C 0.584 3.416 11 O -0.535 6.535 12 N -0.698 5.698 13 C 0.156 3.844 14 H 0.116 0.884 15 C -0.183 4.183 16 C 0.187 3.813 17 H 0.069 0.931 18 N -0.700 5.700 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.009 4.009 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.129 4.129 28 C -0.109 4.109 29 C -0.142 4.142 30 C -0.113 4.113 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.184 0.816 41 H 0.158 0.842 42 H 0.399 0.601 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.387 0.613 46 H 0.257 0.743 47 H 0.087 0.913 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.062 0.938 51 H 0.063 0.937 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.627 -3.104 10.360 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.201 4.201 4 C 0.000 4.000 5 N -0.038 5.038 6 N -0.110 5.110 7 C -0.183 4.183 8 C -0.224 4.224 9 C -0.160 4.160 10 C 0.369 3.631 11 O -0.412 6.412 12 N -0.349 5.349 13 C 0.052 3.948 14 H 0.134 0.866 15 C -0.225 4.225 16 C 0.073 3.927 17 H 0.087 0.913 18 N -0.338 5.338 19 C -0.376 4.376 20 H 0.089 0.911 21 C -0.206 4.206 22 N -0.577 5.577 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.131 4.131 28 C -0.147 4.147 29 C -0.179 4.179 30 C -0.151 4.151 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.133 0.867 40 H 0.201 0.799 41 H 0.175 0.825 42 H 0.235 0.765 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.221 0.779 46 H 0.066 0.934 47 H 0.105 0.895 48 H 0.076 0.924 49 H 0.091 0.909 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.500 -1.312 10.818 22.339 hybrid contribution 0.961 -0.995 -0.569 1.496 sum -18.539 -2.308 10.249 21.309 Atomic orbital electron populations 1.21855 0.94524 1.02151 1.01871 1.21420 0.96429 0.97112 0.97613 1.21736 1.01987 0.94154 1.02175 1.22357 1.02976 0.74358 1.00268 1.45780 1.15095 1.08649 1.34238 1.73206 1.06715 1.12227 1.18893 1.23528 1.00697 0.91610 1.02459 1.22217 0.97123 0.97979 1.05040 1.21564 0.98650 0.90138 1.05693 1.16990 0.82404 0.84715 0.78987 1.90818 1.61100 1.26552 1.62712 1.45826 1.31355 1.11259 1.46453 1.22365 0.83143 0.99896 0.89402 0.86581 1.24333 0.96679 1.00574 1.00928 1.20778 0.88151 0.94108 0.89638 0.91316 1.42082 1.08413 1.20822 1.62454 1.19210 0.86369 1.03290 1.28721 0.91054 1.24753 0.98294 0.96749 1.00794 1.69653 1.35916 1.10082 1.42041 0.86266 0.85017 0.76969 0.77893 1.21234 1.21704 1.21217 1.23534 0.98538 0.95911 0.95142 1.22515 0.97115 0.96434 0.98639 1.22876 0.97007 0.99114 0.98942 1.22542 0.95845 0.99937 0.96737 0.92423 0.92439 0.92584 0.90202 0.91618 0.91863 0.92461 0.88434 0.86652 0.79899 0.82473 0.76525 0.91151 0.90794 0.77922 0.93353 0.89494 0.92354 0.90904 0.91913 0.91823 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.05 37.15 0.34 -1.07 16 2 C -0.11 -1.12 3.13 -90.62 -0.28 -1.40 16 3 C -0.14 -1.30 9.19 37.16 0.34 -0.95 16 4 C 0.12 1.33 5.08 -4.04 -0.02 1.31 16 5 N -0.25 -3.08 2.93 -57.14 -0.17 -3.25 16 6 N -0.28 -3.30 11.20 30.59 0.34 -2.96 16 7 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 8 C -0.19 -1.95 10.50 -38.98 -0.41 -2.36 16 9 C -0.03 -0.40 6.96 -82.06 -0.57 -0.97 16 10 C 0.58 8.46 7.79 -12.64 -0.10 8.36 16 11 O -0.53 -9.37 14.44 5.25 0.08 -9.29 16 12 N -0.70 -9.06 5.26 -54.52 -0.29 -9.35 16 13 C 0.16 2.47 4.00 -67.48 -0.27 2.20 16 14 H 0.12 2.22 7.53 -51.93 -0.39 1.83 16 15 C -0.18 -3.12 7.68 -25.75 -0.20 -3.32 16 16 C 0.19 3.50 4.36 -67.48 -0.29 3.21 16 17 H 0.07 1.29 8.10 -51.93 -0.42 0.86 16 18 N -0.70 -16.82 5.09 -52.99 -0.27 -17.09 16 19 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 22 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 23 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C -0.13 -1.94 0.92 -154.71 -0.14 -2.08 16 28 C -0.11 -1.28 7.47 -26.28 -0.20 -1.47 16 29 C -0.14 -1.69 8.08 -25.75 -0.21 -1.90 16 30 C -0.11 -1.74 7.49 -26.28 -0.20 -1.93 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.62 7.17 -51.93 -0.37 0.24 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.12 1.42 6.53 -51.93 -0.34 1.08 16 40 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.16 1.12 7.58 -52.49 -0.40 0.73 16 42 H 0.40 4.12 5.76 -40.82 -0.23 3.89 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.39 9.99 7.81 -40.82 -0.32 9.68 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.06 0.56 6.42 -51.93 -0.33 0.23 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 52 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 417.15 15.07 6.29 6.29 Total: -1.00 -31.16 417.15 -9.68 -40.84 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -8.70 Total: 14.42 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.67 Total: -9.78 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.34 Total: -59.51 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -31.16 -9.68 -40.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078640006.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.082 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds