Wall clock time and date at job start Wed Apr 1 2020 05:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47273 * 2 1 4 4 C 1.53007 * 109.47092 * 119.99876 * 2 1 3 5 5 N 1.46493 * 109.47507 * 174.24900 * 4 2 1 6 6 N 1.28451 * 125.19113 * 275.95504 * 5 4 2 7 7 C 1.30863 * 110.92696 * 180.02562 * 6 5 4 8 8 C 1.39675 * 107.86132 * 359.77273 * 7 6 5 9 9 C 1.36606 * 125.19219 * 95.96850 * 5 4 2 10 10 C 1.47164 * 126.87915 * 359.94856 * 9 5 4 11 11 O 1.21630 * 120.00087 * 3.89786 * 10 9 5 12 12 N 1.34775 * 119.99732 * 183.89264 * 10 9 5 13 13 C 1.46504 * 119.99998 * 184.99861 * 12 10 9 14 14 H 1.09005 * 112.94604 * 21.83198 * 13 12 10 15 15 C 1.53946 * 113.66309 * 250.42199 * 13 12 10 16 16 C 1.53946 * 87.29604 * 270.26295 * 15 13 12 17 17 H 1.08993 * 113.66657 * 89.74083 * 16 15 13 18 18 N 1.46498 * 113.66253 * 220.79718 * 16 15 13 19 19 C 1.36939 * 120.00268 * 252.18576 * 18 16 15 20 20 H 1.08000 * 119.99649 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00652 * 179.97438 * 19 18 16 22 22 N 1.31614 * 120.00635 * 180.02562 * 21 19 18 23 23 Si 1.86809 * 119.99658 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.46794 * 89.99760 * 23 21 19 25 25 H 1.48500 * 109.47008 * 209.99906 * 23 21 19 26 26 H 1.48499 * 109.46840 * 329.99691 * 23 21 19 27 27 C 1.52907 * 113.65928 * 153.23236 * 13 12 10 28 28 C 1.52908 * 121.14215 * 323.85290 * 27 13 12 29 29 C 1.53951 * 86.78397 * 259.17939 * 28 27 13 30 30 C 1.52912 * 121.13626 * 215.28779 * 27 13 12 31 31 H 1.08999 * 109.46779 * 300.00055 * 1 2 3 32 32 H 1.09002 * 109.46978 * 60.00453 * 1 2 3 33 33 H 1.09001 * 109.47199 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47107 * 239.99510 * 2 1 3 35 35 H 1.09000 * 109.47139 * 182.41993 * 3 2 1 36 36 H 1.09001 * 109.47184 * 302.41615 * 3 2 1 37 37 H 1.09002 * 109.47593 * 62.41711 * 3 2 1 38 38 H 1.09000 * 109.47044 * 54.24786 * 4 2 1 39 39 H 1.09004 * 109.46722 * 294.25445 * 4 2 1 40 40 H 1.07997 * 126.07061 * 180.02562 * 7 6 5 41 41 H 1.07999 * 127.32057 * 180.24121 * 8 7 6 42 42 H 0.96998 * 119.99993 * 5.00282 * 12 10 9 43 43 H 1.09005 * 113.57949 * 155.65643 * 15 13 12 44 44 H 1.08998 * 113.58230 * 24.86850 * 15 13 12 45 45 H 0.97001 * 120.00191 * 72.18074 * 18 16 15 46 46 H 0.96992 * 120.00604 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.66004 * 13.65732 * 28 27 13 48 48 H 1.09001 * 113.65994 * 144.70888 * 28 27 13 49 49 H 1.08997 * 113.57907 * 89.87078 * 29 28 27 50 50 H 1.09000 * 113.57888 * 220.66127 * 29 28 27 51 51 H 1.08999 * 113.66587 * 215.29881 * 30 27 13 52 52 H 1.09004 * 113.66369 * 346.35780 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4984 -0.8423 1.1822 6 7 4.1366 -1.7693 0.5630 7 6 5.4295 -1.6085 0.6852 8 6 5.6480 -0.4633 1.4543 9 6 4.3873 0.0132 1.7688 10 6 4.0681 1.2060 2.5696 11 8 2.9097 1.4750 2.8248 12 7 5.0594 2.0001 3.0203 13 6 4.7513 3.1242 3.9078 14 1 3.8006 3.0068 4.4281 15 6 4.9260 4.5019 3.2434 16 6 6.3859 4.4707 3.7310 17 1 7.0746 4.0128 3.0210 18 7 6.8633 5.7586 4.2404 19 6 7.7622 6.4920 3.5129 20 1 8.1188 6.1212 2.5633 21 6 8.2142 7.7126 3.9952 22 7 9.0778 8.4178 3.2957 23 14 7.5968 8.3544 5.6373 24 1 8.4897 7.8760 6.7231 25 1 7.5922 9.8393 5.6183 26 1 6.2177 7.8582 5.8758 27 6 5.9092 3.5161 4.8263 28 6 6.8437 2.4590 5.4157 29 6 6.0329 2.5929 6.7175 30 6 5.6559 4.0108 6.2509 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1292 1.4427 -0.0434 36 1 1.6418 1.9686 -0.8675 37 1 1.7126 1.9437 0.9108 38 1 1.5950 -1.7149 1.3023 39 1 1.7631 -0.1514 2.1363 40 1 6.1923 -2.2456 0.2625 41 1 6.5987 -0.0404 1.7437 42 1 5.9768 1.8273 2.7570 43 1 4.3286 5.2878 3.7056 44 1 4.8282 4.4782 2.1581 45 1 6.5427 6.0919 5.0930 46 1 9.3939 9.2705 3.6329 47 1 6.7525 1.4815 4.9420 48 1 7.8776 2.7917 5.5081 49 1 5.1834 1.9122 6.7741 50 1 6.6476 2.5791 7.6175 51 1 6.3558 4.7796 6.5780 52 1 4.6157 4.2729 6.4445 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078640007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:42 Heat of formation + Delta-G solvation = 94.308187 kcal Electronic energy + Delta-G solvation = -31587.445424 eV Core-core repulsion = 27590.406816 eV Total energy + Delta-G solvation = -3997.038608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.76132 -40.77835 -38.86878 -36.78077 -35.24978 -34.30066 -32.66744 -32.12446 -31.06834 -30.12526 -27.41329 -26.82470 -25.68338 -25.15166 -24.31354 -23.34958 -22.16423 -21.62999 -20.84417 -20.38877 -19.99088 -18.55722 -17.96609 -17.27554 -16.41424 -16.35484 -15.74081 -15.40638 -15.29990 -15.08196 -14.82401 -14.51814 -14.22613 -14.03007 -13.85691 -13.55071 -13.29251 -13.04363 -12.81250 -12.58489 -12.46465 -12.33811 -12.24255 -12.13310 -12.02995 -11.56992 -11.52114 -11.28364 -11.13745 -11.05966 -10.99067 -10.98077 -10.81298 -10.34445 -10.19607 -10.04675 -9.99312 -9.72661 -9.49019 -9.38022 -9.21140 -8.90641 -8.89276 -7.30989 -5.82861 -3.18504 1.09382 2.17255 2.43997 3.04677 3.08551 3.32509 3.34748 3.41197 4.25831 4.39470 4.44778 4.53217 4.55963 4.65948 4.69631 4.76787 4.86161 4.95894 5.01844 5.06805 5.11271 5.17776 5.29581 5.33438 5.40011 5.46476 5.48274 5.52951 5.57213 5.62448 5.64227 5.74264 5.78908 5.83210 5.85411 5.92751 5.95052 6.01088 6.04395 6.15313 6.16043 6.20854 6.27386 6.36693 6.49904 6.54939 6.56111 6.72028 6.86129 7.37210 7.87392 7.93326 8.03675 8.36922 9.14573 9.87066 10.06900 11.35351 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.002721 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.808255 B =10286.234900 C =10601.520742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C -0.151 4.151 4 C 0.114 3.886 5 N -0.251 5.251 6 N -0.279 5.279 7 C -0.005 4.005 8 C -0.191 4.191 9 C -0.034 4.034 10 C 0.593 3.407 11 O -0.539 6.539 12 N -0.687 5.687 13 C 0.147 3.853 14 H 0.100 0.900 15 C -0.174 4.174 16 C 0.187 3.813 17 H 0.084 0.916 18 N -0.732 5.732 19 C -0.248 4.248 20 H 0.091 0.909 21 C 0.007 3.993 22 N -0.932 5.932 23 Si 0.880 3.120 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.276 1.276 27 C -0.130 4.130 28 C -0.123 4.123 29 C -0.139 4.139 30 C -0.108 4.108 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.185 0.815 41 H 0.161 0.839 42 H 0.405 0.595 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.364 0.636 46 H 0.260 0.740 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.064 0.936 51 H 0.090 0.910 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.517 -20.668 -1.628 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C -0.208 4.208 4 C -0.006 4.006 5 N -0.038 5.038 6 N -0.112 5.112 7 C -0.180 4.180 8 C -0.220 4.220 9 C -0.162 4.162 10 C 0.379 3.621 11 O -0.417 6.417 12 N -0.337 5.337 13 C 0.042 3.958 14 H 0.118 0.882 15 C -0.216 4.216 16 C 0.075 3.925 17 H 0.102 0.898 18 N -0.372 5.372 19 C -0.378 4.378 20 H 0.109 0.891 21 C -0.189 4.189 22 N -0.579 5.579 23 Si 0.710 3.290 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.202 1.202 27 C -0.132 4.132 28 C -0.160 4.160 29 C -0.176 4.176 30 C -0.146 4.146 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.202 0.798 41 H 0.178 0.822 42 H 0.240 0.760 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.198 0.802 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.106 0.894 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.108 0.892 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.114 -21.028 -2.063 25.409 hybrid contribution 0.814 1.020 1.239 1.799 sum -13.300 -20.008 -0.824 24.039 Atomic orbital electron populations 1.21757 0.93538 1.02037 1.02788 1.21426 0.96702 0.97307 0.97017 1.21935 1.00843 0.95036 1.02987 1.22466 0.72901 1.03173 1.02038 1.45755 1.07522 1.16494 1.34066 1.73193 1.07953 1.13307 1.16734 1.23555 0.92291 0.99282 1.02895 1.22300 0.96639 0.98935 1.04090 1.21410 0.90469 0.97929 1.06418 1.16848 0.85390 0.81072 0.78834 1.90738 1.19138 1.73100 1.58679 1.45277 1.10061 1.29424 1.48903 1.21517 0.97929 0.85636 0.90732 0.88202 1.24273 1.01918 0.94849 1.00600 1.21378 0.91990 0.86238 0.92916 0.89825 1.42701 1.52160 1.19213 1.23102 1.19118 1.16138 0.99819 1.02709 0.89147 1.24676 0.98958 0.97202 0.98087 1.69689 1.34815 1.14794 1.38614 0.86621 0.78648 0.78491 0.85238 1.20983 1.21664 1.20197 1.23493 0.96301 0.98092 0.95323 1.22652 0.98959 0.98077 0.96355 1.22821 0.99891 0.97263 0.97662 1.22472 1.01600 0.96962 0.93582 0.91914 0.91835 0.92408 0.90636 0.93308 0.92595 0.90687 0.88767 0.85870 0.79752 0.82167 0.75974 0.89539 0.91722 0.80234 0.92989 0.91929 0.89387 0.90766 0.91761 0.89205 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.19 37.16 0.34 -0.69 16 2 C -0.11 -0.97 3.12 -90.62 -0.28 -1.25 16 3 C -0.15 -1.65 7.98 37.15 0.30 -1.35 16 4 C 0.11 1.13 5.42 -4.04 -0.02 1.10 16 5 N -0.25 -2.90 3.09 -57.14 -0.18 -3.08 16 6 N -0.28 -3.27 11.90 30.59 0.36 -2.91 16 7 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 8 C -0.19 -1.89 10.50 -38.99 -0.41 -2.30 16 9 C -0.03 -0.39 5.83 -82.06 -0.48 -0.87 16 10 C 0.59 7.52 7.18 -12.64 -0.09 7.42 16 11 O -0.54 -7.81 12.10 5.25 0.06 -7.74 16 12 N -0.69 -8.11 4.76 -54.53 -0.26 -8.37 16 13 C 0.15 1.98 4.12 -67.48 -0.28 1.70 16 14 H 0.10 1.41 7.49 -51.93 -0.39 1.02 16 15 C -0.17 -2.79 7.68 -25.75 -0.20 -2.99 16 16 C 0.19 3.26 4.26 -67.48 -0.29 2.97 16 17 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 18 N -0.73 -16.20 5.10 -52.99 -0.27 -16.47 16 19 C -0.25 -6.69 10.45 -15.06 -0.16 -6.85 16 20 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 21 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 22 N -0.93 -28.63 13.97 55.49 0.78 -27.86 16 23 Si 0.88 21.44 27.74 -169.99 -4.71 16.72 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 27 C -0.13 -1.81 0.92 -154.71 -0.14 -1.96 16 28 C -0.12 -1.53 7.64 -26.28 -0.20 -1.73 16 29 C -0.14 -1.65 8.08 -25.75 -0.21 -1.85 16 30 C -0.11 -1.50 7.15 -26.28 -0.19 -1.69 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.61 6.71 -51.93 -0.35 0.26 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.92 6.67 -51.93 -0.35 0.57 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.12 1.33 5.92 -51.93 -0.31 1.02 16 40 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.16 1.19 7.60 -52.49 -0.40 0.79 16 42 H 0.40 4.15 7.56 -40.82 -0.31 3.84 16 43 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.36 7.95 4.09 -40.82 -0.17 7.79 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.06 0.68 7.63 -51.93 -0.40 0.29 16 48 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.09 1.40 7.03 -51.93 -0.36 1.03 16 52 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 407.38 15.07 6.14 6.14 Total: -1.00 -31.73 407.38 -9.23 -40.96 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -8.53 Total: 13.08 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.61 Total: -10.47 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.43 Total: -58.68 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.06 Total: -7.74 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.73 -9.23 -40.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078640007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.266 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds