Wall clock time and date at job start Wed Apr 1 2020 05:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46895 * 2 1 4 4 C 1.53005 * 109.46969 * 119.99737 * 2 1 3 5 5 N 1.46495 * 109.47120 * 65.00455 * 4 2 1 6 6 N 1.28448 * 125.18793 * 264.12272 * 5 4 2 7 7 C 1.30870 * 110.92421 * 179.97438 * 6 5 4 8 8 C 1.39675 * 107.86105 * 359.77563 * 7 6 5 9 9 C 1.36598 * 125.19344 * 84.09789 * 5 4 2 10 10 C 1.47166 * 126.88204 * 359.97438 * 9 5 4 11 11 O 1.21621 * 119.99901 * 5.38194 * 10 9 5 12 12 N 1.34778 * 120.00048 * 185.38492 * 10 9 5 13 13 C 1.46499 * 120.00091 * 174.58020 * 12 10 9 14 14 H 1.08994 * 112.88559 * 23.64868 * 13 12 10 15 15 C 1.54258 * 113.74493 * 252.22266 * 13 12 10 16 16 C 1.53951 * 87.18630 * 270.25156 * 15 13 12 17 17 H 1.09003 * 113.66140 * 220.75094 * 16 15 13 18 18 N 1.46503 * 113.66584 * 89.78974 * 16 15 13 19 19 C 1.36930 * 119.99907 * 105.73179 * 18 16 15 20 20 H 1.08004 * 120.00525 * 0.27912 * 19 18 16 21 21 C 1.38817 * 120.00198 * 180.27498 * 19 18 16 22 22 N 1.31618 * 119.99321 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00307 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.46839 * 90.00245 * 23 21 19 25 25 H 1.48498 * 109.47134 * 210.00243 * 23 21 19 26 26 H 1.48499 * 109.46996 * 330.00380 * 23 21 19 27 27 C 1.52906 * 113.66164 * 154.99893 * 13 12 10 28 28 C 1.52907 * 121.13455 * 215.38078 * 27 13 12 29 29 C 1.53953 * 86.78227 * 100.82120 * 28 27 13 30 30 C 1.52901 * 121.13960 * 323.94393 * 27 13 12 31 31 H 1.08999 * 109.46777 * 60.00864 * 1 2 3 32 32 H 1.09006 * 109.46802 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47389 * 299.99685 * 1 2 3 34 34 H 1.08997 * 109.47631 * 239.99838 * 2 1 3 35 35 H 1.09001 * 109.47229 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47383 * 299.99820 * 3 2 1 37 37 H 1.08998 * 109.47230 * 60.00296 * 3 2 1 38 38 H 1.08995 * 109.47175 * 304.99887 * 4 2 1 39 39 H 1.09003 * 109.46794 * 185.00355 * 4 2 1 40 40 H 1.07997 * 126.06624 * 179.97438 * 7 6 5 41 41 H 1.08002 * 127.31737 * 180.23760 * 8 7 6 42 42 H 0.97000 * 119.99580 * 354.58072 * 12 10 9 43 43 H 1.08998 * 113.57643 * 155.69858 * 15 13 12 44 44 H 1.09000 * 113.66723 * 24.81875 * 15 13 12 45 45 H 0.96999 * 119.99973 * 286.01388 * 18 16 15 46 46 H 0.97002 * 119.99388 * 179.97438 * 22 21 19 47 47 H 1.09005 * 113.66694 * 215.29131 * 28 27 13 48 48 H 1.08998 * 113.66129 * 346.35130 * 28 27 13 49 49 H 1.09000 * 113.58294 * 270.13396 * 29 28 27 50 50 H 1.08993 * 113.58018 * 139.33578 * 29 28 27 51 51 H 1.08999 * 113.66202 * 13.65496 * 30 27 13 52 52 H 1.08998 * 113.66746 * 144.71069 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1907 6 7 0.6125 -2.6387 1.7494 7 6 0.5360 -3.9244 1.5174 8 6 1.6310 -4.2831 0.7279 9 6 2.3418 -3.1117 0.5330 10 6 3.5871 -2.9516 -0.2347 11 8 4.1586 -1.8781 -0.2494 12 7 4.0943 -3.9945 -0.9214 13 6 5.2661 -3.8059 -1.7801 14 1 5.8718 -2.9480 -1.4882 15 6 4.9451 -3.8529 -3.2882 16 6 5.1958 -5.3702 -3.2170 17 1 5.7451 -5.7634 -4.0724 18 7 3.9962 -6.1503 -2.9027 19 6 3.3754 -6.8765 -3.8837 20 1 3.7726 -6.8778 -4.8880 21 6 2.2354 -7.6111 -3.5873 22 7 1.7511 -7.6091 -2.3635 23 14 1.3889 -8.6024 -4.9253 24 1 1.9606 -9.9723 -4.9629 25 1 -0.0659 -8.6808 -4.6379 26 1 1.5992 -7.9420 -6.2387 27 6 6.0772 -5.0832 -2.0008 28 6 7.6009 -5.0413 -2.1210 29 6 7.6427 -5.5103 -0.6552 30 6 6.2459 -6.1153 -0.8854 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.1300 1.4426 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6054 -0.2617 2.1370 39 1 3.1263 -0.6442 1.2952 40 1 -0.2382 -4.5893 1.8708 41 1 1.8727 -5.2661 0.3514 42 1 3.6833 -4.8700 -0.8470 43 1 5.6688 -3.3198 -3.9047 44 1 3.9135 -3.5919 -3.5242 45 1 3.6393 -6.1490 -2.0008 46 1 0.9543 -8.1221 -2.1565 47 1 8.0045 -5.7693 -2.8249 48 1 8.0005 -4.0384 -2.2709 49 1 7.6501 -4.6918 0.0645 50 1 8.4134 -6.2553 -0.4576 51 1 5.5630 -5.9704 -0.0483 52 1 6.2686 -7.1451 -1.2420 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078640008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:47 Heat of formation + Delta-G solvation = 92.995106 kcal Electronic energy + Delta-G solvation = -32207.556189 eV Core-core repulsion = 28210.460642 eV Total energy + Delta-G solvation = -3997.095548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35890 -40.61169 -38.50603 -36.54595 -35.31003 -33.72330 -32.54051 -31.81864 -30.58344 -29.66680 -27.26280 -26.50977 -25.51469 -24.88944 -24.16925 -23.45895 -22.15681 -21.16424 -20.72445 -20.14503 -19.63867 -18.48125 -17.23160 -17.12383 -16.09721 -15.94275 -15.56261 -15.28129 -15.06203 -14.72822 -14.53664 -14.31162 -14.02055 -13.84636 -13.50553 -13.44231 -13.08522 -12.94595 -12.67707 -12.52269 -12.32496 -12.13304 -12.03544 -11.97304 -11.56645 -11.45552 -11.37260 -11.08799 -10.97553 -10.89810 -10.83432 -10.70038 -10.61202 -10.24320 -10.11431 -9.92486 -9.83099 -9.64839 -9.38217 -9.01214 -8.89926 -8.78766 -8.54129 -7.07076 -5.88539 -3.16517 1.48746 2.51692 2.84246 3.37392 3.38842 3.44950 3.45632 3.49019 4.47290 4.53291 4.66254 4.71829 4.76538 4.91910 4.94305 4.98688 5.00877 5.12615 5.29175 5.31119 5.35399 5.37118 5.45946 5.53509 5.58280 5.61256 5.72822 5.80467 5.83159 5.84624 5.86920 5.95143 5.97124 5.98779 6.07832 6.09935 6.10886 6.15687 6.21301 6.22429 6.30845 6.38940 6.57810 6.64940 6.71494 6.74647 6.89611 6.92416 7.03572 7.64187 7.76675 8.24157 8.30826 8.40672 9.42003 9.95931 10.29878 11.34249 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.004094 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.750017 B = 6837.440373 C = 8551.964309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.125 3.875 5 N -0.256 5.256 6 N -0.280 5.280 7 C -0.007 4.007 8 C -0.172 4.172 9 C -0.042 4.042 10 C 0.595 3.405 11 O -0.553 6.553 12 N -0.681 5.681 13 C 0.152 3.848 14 H 0.094 0.906 15 C -0.186 4.186 16 C 0.180 3.820 17 H 0.066 0.934 18 N -0.699 5.699 19 C -0.243 4.243 20 H 0.073 0.927 21 C -0.008 4.008 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.132 4.132 28 C -0.103 4.103 29 C -0.142 4.142 30 C -0.116 4.116 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.185 0.815 41 H 0.168 0.832 42 H 0.411 0.589 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.379 0.621 46 H 0.257 0.743 47 H 0.086 0.914 48 H 0.065 0.935 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.061 0.939 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.887 11.486 6.972 14.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.198 4.198 4 C 0.004 3.996 5 N -0.043 5.043 6 N -0.113 5.113 7 C -0.182 4.182 8 C -0.201 4.201 9 C -0.170 4.170 10 C 0.381 3.619 11 O -0.433 6.433 12 N -0.333 5.333 13 C 0.047 3.953 14 H 0.112 0.888 15 C -0.228 4.228 16 C 0.067 3.933 17 H 0.084 0.916 18 N -0.339 5.339 19 C -0.374 4.374 20 H 0.091 0.909 21 C -0.204 4.204 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.134 4.134 28 C -0.141 4.141 29 C -0.179 4.179 30 C -0.153 4.153 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.202 0.798 41 H 0.186 0.814 42 H 0.251 0.749 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.214 0.786 46 H 0.067 0.933 47 H 0.104 0.896 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.080 0.920 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.681 13.138 7.346 15.763 hybrid contribution -0.658 -1.721 -0.837 2.024 sum 4.022 11.417 6.509 13.744 Atomic orbital electron populations 1.21852 0.94508 1.02457 1.01631 1.21424 0.96539 0.96796 0.97927 1.21718 1.01594 0.94477 1.02026 1.22227 1.02539 0.74849 0.99937 1.45647 1.15642 1.08311 1.34750 1.73156 1.06664 1.12290 1.19166 1.23543 1.00813 0.91378 1.02491 1.22521 0.96242 0.98697 1.02607 1.21360 0.99055 0.90241 1.06362 1.16871 0.82432 0.84251 0.78372 1.90722 1.61381 1.26504 1.64649 1.45426 1.30763 1.12256 1.44859 1.21517 0.85920 0.97074 0.90795 0.88780 1.24367 1.02048 1.01985 0.94441 1.21050 0.88284 0.89779 0.94161 0.91639 1.42078 1.27400 1.53987 1.10412 1.19253 1.06181 1.20887 0.91088 0.90948 1.24698 0.98418 1.00684 0.96587 1.69598 1.24717 1.45568 1.17992 0.86188 0.78798 0.80119 0.81048 1.21700 1.21760 1.20797 1.23425 0.95461 0.95821 0.98733 1.22480 0.93364 1.01287 0.96984 1.22863 0.97959 1.00336 0.96755 1.22511 0.96015 0.99036 0.97762 0.92564 0.92308 0.92529 0.90158 0.91940 0.92047 0.92551 0.88718 0.87053 0.79845 0.81413 0.74948 0.90340 0.90916 0.78609 0.93320 0.89590 0.91639 0.90788 0.91903 0.92004 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.06 37.16 0.34 -1.40 16 2 C -0.11 -1.31 3.13 -90.62 -0.28 -1.59 16 3 C -0.14 -1.35 9.19 37.16 0.34 -1.01 16 4 C 0.12 1.59 5.07 -4.04 -0.02 1.57 16 5 N -0.26 -3.91 2.92 -57.14 -0.17 -4.08 16 6 N -0.28 -4.33 11.23 30.59 0.34 -3.98 16 7 C -0.01 -0.10 12.03 -17.42 -0.21 -0.31 16 8 C -0.17 -2.79 10.50 -38.99 -0.41 -3.20 16 9 C -0.04 -0.71 6.96 -82.06 -0.57 -1.28 16 10 C 0.59 10.31 7.79 -12.64 -0.10 10.21 16 11 O -0.55 -10.03 14.38 5.26 0.08 -9.95 16 12 N -0.68 -11.59 4.68 -54.37 -0.25 -11.84 16 13 C 0.15 2.47 4.16 -67.32 -0.28 2.19 16 14 H 0.09 1.52 7.41 -51.93 -0.38 1.13 16 15 C -0.19 -3.20 7.71 -25.58 -0.20 -3.39 16 16 C 0.18 3.33 4.35 -67.48 -0.29 3.03 16 17 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 18 N -0.70 -15.82 4.98 -52.98 -0.26 -16.09 16 19 C -0.24 -6.29 9.97 -15.06 -0.15 -6.44 16 20 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 22 N -0.93 -25.63 13.06 55.49 0.72 -24.90 16 23 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.13 -2.03 0.78 -154.71 -0.12 -2.15 16 28 C -0.10 -1.30 7.84 -26.28 -0.21 -1.51 16 29 C -0.14 -1.77 8.08 -25.75 -0.21 -1.98 16 30 C -0.12 -1.75 7.24 -26.29 -0.19 -1.94 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.83 7.18 -51.93 -0.37 0.46 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.11 1.48 6.55 -51.93 -0.34 1.14 16 40 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.17 2.78 7.58 -52.49 -0.40 2.38 16 42 H 0.41 7.42 5.00 -40.82 -0.20 7.21 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.38 8.78 5.34 -40.82 -0.22 8.56 16 46 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 47 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.06 0.96 7.58 -51.93 -0.39 0.57 16 52 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 414.41 15.07 6.25 6.25 Total: -1.00 -28.65 414.41 -9.60 -38.25 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: -8.62 Total: 19.43 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.66 Total: -9.49 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.38 Total: -60.89 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -28.65 -9.60 -38.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078640008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.244 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds