Wall clock time and date at job start Wed Apr 1 2020 05:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00395 * 2 1 3 5 5 N 1.46505 * 109.47200 * 119.99934 * 2 1 3 6 6 C 1.34257 * 125.74922 * 75.31286 * 5 2 1 7 7 C 1.38045 * 107.41201 * 180.10807 * 6 5 2 8 8 C 1.47436 * 126.41263 * 179.87070 * 7 6 5 9 9 O 1.21605 * 119.99737 * 359.43935 * 8 7 6 10 10 N 1.34777 * 119.99981 * 179.70961 * 8 7 6 11 11 C 1.46496 * 119.99875 * 179.97438 * 10 8 7 12 12 H 1.08999 * 112.88840 * 336.35191 * 11 10 8 13 13 C 1.53953 * 113.66059 * 107.81960 * 11 10 8 14 14 C 1.53942 * 87.29745 * 89.73552 * 13 11 10 15 15 H 1.08991 * 113.66618 * 270.26234 * 14 13 11 16 16 N 1.46501 * 113.74592 * 139.21752 * 14 13 11 17 17 C 1.36936 * 120.00258 * 107.77515 * 16 14 13 18 18 H 1.08001 * 119.99770 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00093 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00332 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99930 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47041 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47098 * 119.99893 * 21 19 17 24 24 H 1.48503 * 109.46987 * 239.99912 * 21 19 17 25 25 C 1.52910 * 86.78394 * 24.73465 * 14 13 11 26 26 C 1.52910 * 121.13768 * 100.81764 * 25 14 13 27 27 C 1.53946 * 86.78269 * 100.81866 * 26 25 14 28 28 C 1.52902 * 121.13757 * 209.38129 * 25 14 13 29 29 C 1.41283 * 107.17312 * 359.60807 * 7 6 5 30 30 N 1.30455 * 108.02415 * 0.24067 * 29 7 6 31 31 H 1.09001 * 109.46848 * 299.99698 * 1 2 3 32 32 H 1.08998 * 109.47101 * 59.99987 * 1 2 3 33 33 H 1.08999 * 109.46791 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47110 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47048 * 300.00505 * 3 2 1 36 36 H 1.09008 * 109.46792 * 60.00115 * 3 2 1 37 37 H 1.09005 * 109.47126 * 299.99808 * 4 2 1 38 38 H 1.08998 * 109.47390 * 59.99795 * 4 2 1 39 39 H 1.09003 * 109.47263 * 179.97438 * 4 2 1 40 40 H 1.07998 * 126.29717 * 359.95839 * 6 5 2 41 41 H 0.96999 * 120.00043 * 0.02562 * 10 8 7 42 42 H 1.09003 * 113.57952 * 204.34652 * 13 11 10 43 43 H 1.09003 * 113.57754 * 335.13273 * 13 11 10 44 44 H 0.97002 * 119.99936 * 287.77036 * 16 14 13 45 45 H 0.97006 * 120.00583 * 180.02562 * 20 19 17 46 46 H 1.09001 * 113.66498 * 215.29344 * 26 25 14 47 47 H 1.08999 * 113.66107 * 346.34638 * 26 25 14 48 48 H 1.08995 * 113.58359 * 270.13310 * 27 26 25 49 49 H 1.09003 * 113.57957 * 139.33241 * 27 26 25 50 50 H 1.09001 * 113.66345 * 13.64858 * 28 25 14 51 51 H 1.09001 * 113.66600 * 144.70499 * 28 25 14 52 52 H 1.07997 * 125.99364 * 180.27745 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 2.0194 -2.0192 1.3894 7 6 2.5578 -2.2546 2.6386 8 6 2.7524 -3.5707 3.2738 9 8 2.4156 -4.5832 2.6905 10 7 3.2988 -3.6514 4.5033 11 6 3.4917 -4.9591 5.1347 12 1 2.8202 -5.7227 4.7421 13 6 4.9645 -5.4027 5.1995 14 6 5.0424 -4.6928 6.5632 15 1 5.3347 -3.6451 6.4950 16 7 5.8064 -5.4329 7.5707 17 6 7.0437 -4.9890 7.9542 18 1 7.4566 -4.0935 7.5137 19 6 7.7677 -5.6905 8.9084 20 7 7.2648 -6.7820 9.4449 21 14 9.4560 -5.0853 9.4310 22 1 9.7909 -3.8464 8.6839 23 1 9.4499 -4.7989 10.8881 24 1 10.4694 -6.1299 9.1360 25 6 3.5311 -4.9032 6.6623 26 6 2.9439 -6.0321 7.5102 27 6 2.6606 -4.9631 8.5813 28 6 2.6466 -3.9289 7.4409 29 6 2.8929 -0.9985 3.1918 30 7 2.5685 -0.0771 2.3272 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2073 -2.1392 39 1 3.1301 -0.7207 -1.2495 40 1 1.6623 -2.7663 0.6962 41 1 3.5635 -2.8435 4.9703 42 1 5.0920 -6.4834 5.2624 43 1 5.5915 -4.9460 4.4337 44 1 5.4357 -6.2373 7.9662 45 1 7.7706 -7.2721 10.1120 46 1 2.0431 -6.4752 7.0854 47 1 3.6789 -6.7758 7.8180 48 1 3.4804 -4.8240 9.2860 49 1 1.6951 -5.0834 9.0727 50 1 3.1441 -2.9925 7.6934 51 1 1.6623 -3.7809 6.9966 52 1 3.3399 -0.8305 4.1605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078663624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:51 Heat of formation + Delta-G solvation = 91.194729 kcal Electronic energy + Delta-G solvation = -30675.243931 eV Core-core repulsion = 26678.070313 eV Total energy + Delta-G solvation = -3997.173618 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.70658 -40.43796 -38.57173 -37.07907 -34.92388 -33.97493 -32.28221 -31.04729 -30.43638 -29.52827 -28.00410 -27.84672 -25.40617 -24.87999 -24.05572 -23.49633 -22.49850 -21.81530 -20.37115 -20.00002 -19.53221 -18.07540 -17.65169 -16.88373 -16.22300 -15.85775 -15.71692 -15.07834 -15.03979 -14.78370 -14.63664 -14.47934 -14.19460 -13.87023 -13.70879 -13.37132 -13.07713 -12.83537 -12.77562 -12.69088 -12.50249 -12.40337 -12.31105 -11.94511 -11.76732 -11.74208 -11.70691 -11.62564 -11.29513 -11.09134 -10.87684 -10.78127 -10.53662 -10.11928 -10.07457 -9.79760 -9.77665 -9.73766 -9.54323 -9.33194 -8.91420 -8.82120 -8.50159 -6.94113 -5.77901 -3.05972 1.41228 1.99898 2.07312 3.39624 3.42837 3.48978 3.50859 3.55459 3.91524 4.18436 4.29159 4.47426 4.55630 4.58866 4.86982 4.90443 4.93822 5.02300 5.09443 5.10532 5.12837 5.16214 5.19790 5.26335 5.29347 5.32392 5.34347 5.44636 5.50209 5.58499 5.61085 5.73621 5.75631 5.92382 6.02033 6.07858 6.12154 6.17486 6.24159 6.28754 6.36441 6.49137 6.59807 6.63071 6.63533 6.74381 6.94771 7.00438 7.14020 7.36386 7.70554 7.79806 8.40975 8.47808 9.52628 10.10627 10.45383 11.44416 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.002262 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.149191 B =12374.529526 C =13152.371446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.177 3.823 3 C -0.144 4.144 4 C -0.163 4.163 5 N -0.352 5.352 6 C 0.126 3.874 7 C -0.289 4.289 8 C 0.595 3.405 9 O -0.556 6.556 10 N -0.698 5.698 11 C 0.132 3.868 12 H 0.095 0.905 13 C -0.175 4.175 14 C 0.192 3.808 15 H 0.075 0.925 16 N -0.708 5.708 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.121 4.121 26 C -0.110 4.110 27 C -0.131 4.131 28 C -0.125 4.125 29 C 0.079 3.921 30 N -0.294 5.294 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.183 0.817 41 H 0.398 0.602 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.387 0.613 45 H 0.255 0.745 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.055 0.945 50 H 0.064 0.936 51 H 0.072 0.928 52 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.692 14.250 -18.675 28.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 C -0.201 4.201 4 C -0.221 4.221 5 N -0.132 5.132 6 C -0.025 4.025 7 C -0.304 4.304 8 C 0.382 3.618 9 O -0.435 6.435 10 N -0.347 5.347 11 C 0.027 3.973 12 H 0.113 0.887 13 C -0.217 4.217 14 C 0.079 3.921 15 H 0.093 0.907 16 N -0.347 5.347 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.124 4.124 26 C -0.148 4.148 27 C -0.169 4.169 28 C -0.163 4.163 29 C -0.109 4.109 30 N -0.113 5.113 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.200 0.800 41 H 0.232 0.768 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.223 0.777 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.074 0.926 50 H 0.082 0.918 51 H 0.090 0.910 52 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -15.806 14.958 -19.386 29.145 hybrid contribution 1.053 -0.569 0.847 1.467 sum -14.753 14.389 -18.539 27.720 Atomic orbital electron populations 1.22282 0.92599 1.03389 1.03608 1.20856 0.94614 0.93966 0.81136 1.21919 1.02356 0.92616 1.03230 1.22291 1.02640 1.01222 0.95961 1.48820 1.46090 1.04159 1.14142 1.22812 0.96441 0.86382 0.96909 1.20297 1.17957 0.94292 0.97807 1.17211 0.76589 0.87123 0.80828 1.90750 1.52190 1.36868 1.63735 1.45344 1.62926 1.09332 1.17082 1.21680 0.98407 0.84682 0.92553 0.88674 1.24269 0.94411 1.01959 1.01076 1.21282 0.87150 0.95213 0.88443 0.90666 1.42410 1.17403 1.29726 1.45131 1.19323 0.93240 1.07260 1.17385 0.91147 1.24738 0.98787 0.97653 0.99674 1.69662 1.38157 1.18389 1.31706 0.86147 0.84352 0.77801 0.78058 1.20587 1.21919 1.21922 1.23579 0.98512 0.98396 0.91890 1.22446 0.99931 0.96407 0.95993 1.22743 1.01296 0.96323 0.96514 1.22635 0.98954 0.97403 0.97294 1.24097 0.97844 0.89718 0.99197 1.77137 1.17947 1.21922 0.94314 0.91412 0.90139 0.91591 0.91464 0.90816 0.90835 0.91310 0.89807 0.91243 0.80020 0.76763 0.89676 0.92287 0.77711 0.93540 0.90811 0.90332 0.89215 0.92579 0.91773 0.90958 0.79413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.72 37.16 0.32 -0.50 16 2 C 0.18 1.13 1.23 -131.81 -0.16 0.97 16 3 C -0.14 -0.86 8.07 37.16 0.30 -0.56 16 4 C -0.16 -0.79 8.28 37.16 0.31 -0.48 16 5 N -0.35 -3.34 3.41 -48.10 -0.16 -3.50 16 6 C 0.13 1.32 10.39 -16.56 -0.17 1.14 16 7 C -0.29 -3.49 6.13 -105.07 -0.64 -4.14 16 8 C 0.59 8.70 7.81 -12.51 -0.10 8.60 16 9 O -0.56 -9.98 16.50 5.27 0.09 -9.89 16 10 N -0.70 -9.52 5.04 -54.44 -0.27 -9.79 16 11 C 0.13 2.08 4.13 -67.48 -0.28 1.80 16 12 H 0.10 1.61 7.46 -51.93 -0.39 1.22 16 13 C -0.17 -3.15 7.68 -25.75 -0.20 -3.34 16 14 C 0.19 3.65 4.27 -67.48 -0.29 3.36 16 15 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 16 N -0.71 -17.01 5.33 -53.00 -0.28 -17.29 16 17 C -0.24 -6.50 9.97 -15.06 -0.15 -6.65 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 C -0.12 -1.94 0.92 -154.71 -0.14 -2.08 16 26 C -0.11 -1.77 7.47 -26.28 -0.20 -1.97 16 27 C -0.13 -2.04 8.08 -25.75 -0.21 -2.25 16 28 C -0.13 -1.79 7.49 -26.28 -0.20 -1.98 16 29 C 0.08 0.85 11.50 -16.98 -0.20 0.66 16 30 N -0.29 -3.28 11.56 30.86 0.36 -2.92 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.52 8.03 -51.92 -0.42 0.11 16 37 H 0.07 0.32 7.33 -51.93 -0.38 -0.06 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.18 1.58 7.52 -52.49 -0.39 1.19 16 41 H 0.40 4.62 7.57 -40.82 -0.31 4.31 16 42 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.39 9.87 5.92 -40.82 -0.24 9.63 16 45 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.08 1.45 6.42 -51.93 -0.33 1.12 16 48 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 51 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 52 H 0.19 1.53 7.50 -52.49 -0.39 1.14 16 LS Contribution 419.39 15.07 6.32 6.32 Total: -1.00 -32.89 419.39 -9.09 -41.98 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -8.74 Total: 12.69 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.09 Total: -7.87 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.36 Total: -60.36 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.89 -9.09 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078663624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.175 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds