Wall clock time and date at job start Wed Apr 1 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47476 * 2 1 4 4 C 1.53003 * 109.47099 * 240.00051 * 2 1 3 5 5 N 1.46500 * 109.47090 * 120.00254 * 2 1 3 6 6 C 1.34265 * 125.75482 * 74.99774 * 5 2 1 7 7 C 1.38040 * 107.41610 * 179.97438 * 6 5 2 8 8 C 1.47425 * 126.41329 * 179.97438 * 7 6 5 9 9 O 1.21602 * 120.00524 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00021 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00219 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.94850 * 336.41199 * 11 10 8 13 13 C 1.53953 * 113.65866 * 107.81081 * 11 10 8 14 14 C 1.53951 * 87.29074 * 139.21235 * 13 11 10 15 15 H 1.09005 * 113.66800 * 89.73780 * 14 13 11 16 16 N 1.46501 * 113.66466 * 220.79694 * 14 13 11 17 17 C 1.36939 * 119.99989 * 252.19086 * 16 14 13 18 18 H 1.08004 * 120.00097 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00496 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99791 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00251 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46948 * 60.00495 * 21 19 17 23 23 H 1.48508 * 109.46826 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47519 * 300.00132 * 21 19 17 25 25 C 1.52908 * 86.78683 * 335.26454 * 14 13 11 26 26 C 1.52906 * 121.14322 * 150.62061 * 25 14 13 27 27 C 1.53957 * 86.77902 * 100.81952 * 26 25 14 28 28 C 1.52912 * 121.13762 * 259.18846 * 25 14 13 29 29 C 1.41288 * 107.17307 * 0.24659 * 7 6 5 30 30 N 1.30453 * 108.02155 * 359.58267 * 29 7 6 31 31 H 1.08995 * 109.46886 * 299.99716 * 1 2 3 32 32 H 1.08996 * 109.47055 * 59.99956 * 1 2 3 33 33 H 1.09002 * 109.46977 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47198 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47175 * 300.00280 * 3 2 1 36 36 H 1.08997 * 109.47124 * 59.99796 * 3 2 1 37 37 H 1.09004 * 109.47386 * 300.00516 * 4 2 1 38 38 H 1.08996 * 109.47173 * 60.00065 * 4 2 1 39 39 H 1.08995 * 109.47531 * 180.02562 * 4 2 1 40 40 H 1.08002 * 126.28949 * 0.02562 * 6 5 2 41 41 H 0.97003 * 120.00273 * 0.02562 * 10 8 7 42 42 H 1.09002 * 113.58246 * 24.61266 * 13 11 10 43 43 H 1.08994 * 113.58138 * 253.81161 * 13 11 10 44 44 H 0.96995 * 120.00384 * 72.18451 * 16 14 13 45 45 H 0.96995 * 120.00166 * 180.02562 * 20 19 17 46 46 H 1.08997 * 113.66080 * 346.35409 * 26 25 14 47 47 H 1.08997 * 113.66819 * 215.29213 * 26 25 14 48 48 H 1.09004 * 113.57788 * 139.34050 * 27 26 25 49 49 H 1.08996 * 113.58263 * 270.12959 * 27 26 25 50 50 H 1.09002 * 113.66342 * 144.69991 * 28 25 14 51 51 H 1.08994 * 113.65844 * 13.64914 * 28 25 14 52 52 H 1.08002 * 125.99093 * 179.73874 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0139 -2.0190 1.3918 7 6 2.5572 -2.2547 2.6388 8 6 2.7506 -3.5707 3.2745 9 8 2.4177 -4.5834 2.6896 10 7 3.2964 -3.6513 4.5042 11 6 3.4881 -4.9590 5.1363 12 1 2.8173 -5.7232 4.7437 13 6 4.9605 -5.4038 5.2015 14 6 4.6646 -5.9235 6.6201 15 1 4.3244 -6.9588 6.6446 16 7 5.7360 -5.6514 7.5814 17 6 6.5285 -6.6737 8.0310 18 1 6.3634 -7.6807 7.6771 19 6 7.5441 -6.4159 8.9415 20 7 7.7450 -5.1889 9.3732 21 14 8.6246 -7.8107 9.5552 22 1 9.3245 -8.4374 8.4052 23 1 9.6265 -7.2762 10.5122 24 1 7.7823 -8.8269 10.2356 25 6 3.5271 -4.9026 6.6638 26 6 2.2698 -5.1547 7.4967 27 6 2.8834 -4.2133 8.5491 28 6 3.6860 -3.5730 7.4021 29 6 2.8874 -0.9983 3.1942 30 7 2.5686 -0.0773 2.3271 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 1.6766 -1.7489 -1.2494 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7217 -1.2491 40 1 1.6526 -2.7658 0.7004 41 1 3.5617 -2.8435 4.9711 42 1 5.6679 -4.5747 5.1797 43 1 5.2097 -6.1922 4.4915 44 1 5.8842 -4.7472 7.8995 45 1 8.4549 -5.0086 10.0091 46 1 2.1700 -6.1854 7.8370 47 1 1.3584 -4.7672 7.0415 48 1 2.1594 -3.5378 9.0048 49 1 3.5050 -4.7260 9.2832 50 1 3.1727 -2.7409 6.9201 51 1 4.7174 -3.3401 7.6666 52 1 3.3290 -0.8299 4.1654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078663625.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:00 Heat of formation + Delta-G solvation = 90.746971 kcal Electronic energy + Delta-G solvation = -30642.828861 eV Core-core repulsion = 26645.635827 eV Total energy + Delta-G solvation = -3997.193034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 5.75 seconds Orbital eigenvalues (eV) -41.69747 -40.41984 -38.56164 -37.07300 -34.77518 -34.02582 -32.44988 -31.04665 -30.43842 -29.57695 -28.00134 -27.84685 -25.44181 -24.89938 -24.08246 -23.44599 -22.50737 -21.50897 -20.39086 -20.02951 -19.58315 -18.07608 -17.67314 -16.84826 -16.23941 -15.98309 -15.76649 -15.03791 -15.00925 -14.75905 -14.59000 -14.46617 -14.33255 -13.86954 -13.79977 -13.10717 -12.96502 -12.84872 -12.77686 -12.72304 -12.61047 -12.39481 -12.30821 -12.01704 -11.80255 -11.75258 -11.71161 -11.44430 -11.18086 -11.10432 -10.85700 -10.73277 -10.65557 -10.19089 -10.00434 -9.88211 -9.79598 -9.77053 -9.53707 -9.38470 -8.90142 -8.81678 -8.46638 -6.94197 -5.77624 -3.05604 1.42069 2.00597 2.07897 3.44697 3.46794 3.49578 3.50884 3.57028 3.92491 4.18815 4.29536 4.48016 4.55801 4.60254 4.87577 4.90907 4.94184 5.01533 5.03343 5.10338 5.13199 5.14221 5.20194 5.26670 5.29814 5.31288 5.32712 5.44999 5.50469 5.59176 5.61404 5.73789 5.74753 5.96437 5.99900 6.04005 6.06428 6.12771 6.25129 6.30684 6.38335 6.46691 6.57747 6.64234 6.66626 6.73767 6.92123 6.99606 7.14552 7.36941 7.71238 7.82355 8.41438 8.49200 9.52967 10.10193 10.45236 11.44640 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.002108 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.354204 B =13280.591468 C =13470.485760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.144 4.144 4 C -0.163 4.163 5 N -0.352 5.352 6 C 0.125 3.875 7 C -0.289 4.289 8 C 0.592 3.408 9 O -0.558 6.558 10 N -0.706 5.706 11 C 0.133 3.867 12 H 0.110 0.890 13 C -0.174 4.174 14 C 0.192 3.808 15 H 0.081 0.919 16 N -0.706 5.706 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.116 4.116 29 C 0.078 3.922 30 N -0.294 5.294 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.183 0.817 41 H 0.397 0.603 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.055 0.945 49 H 0.090 0.910 50 H 0.070 0.930 51 H 0.078 0.922 52 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.940 13.032 -18.483 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 C -0.201 4.201 4 C -0.221 4.221 5 N -0.132 5.132 6 C -0.026 4.026 7 C -0.304 4.304 8 C 0.380 3.620 9 O -0.437 6.437 10 N -0.355 5.355 11 C 0.029 3.971 12 H 0.128 0.872 13 C -0.216 4.216 14 C 0.079 3.921 15 H 0.099 0.901 16 N -0.344 5.344 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.122 4.122 26 C -0.164 4.164 27 C -0.167 4.167 28 C -0.154 4.154 29 C -0.109 4.109 30 N -0.113 5.113 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.200 0.800 41 H 0.232 0.768 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.222 0.778 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.108 0.892 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.115 13.497 -19.171 28.450 hybrid contribution 0.896 -0.913 0.837 1.529 sum -15.220 12.584 -18.334 26.947 Atomic orbital electron populations 1.22282 0.92606 1.03385 1.03606 1.20855 0.94606 0.93970 0.81148 1.21916 1.02357 0.92611 1.03225 1.22289 1.02640 1.01214 0.95957 1.48820 1.46055 1.04193 1.14158 1.22816 0.96442 0.86371 0.96959 1.20341 1.17823 0.94389 0.97856 1.17261 0.76612 0.87085 0.81050 1.90742 1.52398 1.36828 1.63755 1.45736 1.62818 1.09896 1.17082 1.22260 0.98206 0.84689 0.91993 0.87239 1.24274 0.94903 1.01252 1.01203 1.21063 0.87333 0.95177 0.88511 0.90110 1.42336 1.34194 1.08838 1.49059 1.19257 1.08924 0.89505 1.19595 0.91141 1.24734 0.99586 0.96433 1.00066 1.69641 1.34478 1.18156 1.35794 0.86277 0.80244 0.81393 0.78323 1.21286 1.21770 1.21274 1.23605 0.97723 0.98793 0.92067 1.22700 0.96335 1.00038 0.97280 1.22726 0.98952 0.98389 0.96662 1.22422 1.01332 0.94950 0.96708 1.24085 0.97942 0.89755 0.99150 1.77131 1.18049 1.21926 0.94200 0.91421 0.90135 0.91594 0.91464 0.90813 0.90844 0.91323 0.89806 0.91247 0.80030 0.76774 0.90205 0.92187 0.77770 0.93461 0.91552 0.91034 0.92609 0.89170 0.91153 0.90322 0.79496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 8.72 37.16 0.32 -0.51 16 2 C 0.18 1.15 1.23 -131.82 -0.16 0.98 16 3 C -0.14 -0.87 8.07 37.16 0.30 -0.57 16 4 C -0.16 -0.80 8.28 37.16 0.31 -0.50 16 5 N -0.35 -3.39 3.41 -48.11 -0.16 -3.55 16 6 C 0.13 1.33 10.39 -16.56 -0.17 1.16 16 7 C -0.29 -3.56 6.13 -105.07 -0.64 -4.20 16 8 C 0.59 8.77 7.81 -12.52 -0.10 8.67 16 9 O -0.56 -10.04 16.50 5.28 0.09 -9.95 16 10 N -0.71 -9.73 5.24 -54.44 -0.29 -10.02 16 11 C 0.13 2.09 4.12 -67.48 -0.28 1.81 16 12 H 0.11 1.81 7.46 -51.93 -0.39 1.42 16 13 C -0.17 -3.11 7.68 -25.75 -0.20 -3.31 16 14 C 0.19 3.73 4.36 -67.48 -0.29 3.44 16 15 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 16 N -0.71 -16.92 5.32 -52.99 -0.28 -17.20 16 17 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 21 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.12 -1.90 1.06 -154.71 -0.16 -2.06 16 26 C -0.13 -1.86 7.84 -26.28 -0.21 -2.07 16 27 C -0.13 -1.99 8.08 -25.75 -0.21 -2.20 16 28 C -0.12 -1.76 6.78 -26.28 -0.18 -1.94 16 29 C 0.08 0.86 11.50 -16.98 -0.20 0.67 16 30 N -0.29 -3.32 11.56 30.86 0.36 -2.97 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 37 H 0.07 0.32 7.34 -51.93 -0.38 -0.06 16 38 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.18 1.61 7.53 -52.49 -0.40 1.21 16 41 H 0.40 4.71 5.99 -40.82 -0.24 4.47 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.39 9.73 5.92 -40.82 -0.24 9.48 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 50 H 0.07 0.88 7.03 -51.93 -0.36 0.52 16 51 H 0.08 1.37 6.42 -51.93 -0.33 1.04 16 52 H 0.19 1.57 7.50 -52.49 -0.39 1.18 16 LS Contribution 416.81 15.07 6.28 6.28 Total: -1.00 -32.67 416.81 -9.04 -41.71 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -8.62 Total: 13.05 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.11 Total: -7.77 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.35 Total: -60.49 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.67 -9.04 -41.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078663625.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.455 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.75 seconds