Wall clock time and date at job start Wed Apr 1 2020 05:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46547 * 2 1 4 4 C 1.52995 * 109.47099 * 240.00319 * 2 1 3 5 5 N 1.46496 * 109.47228 * 119.99791 * 2 1 3 6 6 C 1.34260 * 125.75339 * 75.26670 * 5 2 1 7 7 C 1.38044 * 107.41893 * 180.14793 * 6 5 2 8 8 C 1.47427 * 126.41461 * 179.87692 * 7 6 5 9 9 O 1.21601 * 120.00184 * 359.70618 * 8 7 6 10 10 N 1.34784 * 119.99752 * 179.70927 * 8 7 6 11 11 C 1.46494 * 119.99635 * 179.97438 * 10 8 7 12 12 H 1.08995 * 112.89101 * 25.33022 * 11 10 8 13 13 C 1.53952 * 113.66330 * 253.98707 * 11 10 8 14 14 C 1.54150 * 87.22833 * 220.83213 * 13 11 10 15 15 H 1.08998 * 113.65444 * 270.16806 * 14 13 11 16 16 N 1.46499 * 113.72378 * 139.15139 * 14 13 11 17 17 C 1.36934 * 119.99841 * 107.74222 * 16 14 13 18 18 H 1.08001 * 120.00543 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00001 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00069 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00146 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47433 * 60.00163 * 21 19 17 23 23 H 1.48503 * 109.47153 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47168 * 299.99873 * 21 19 17 25 25 C 1.52906 * 86.81283 * 24.65467 * 14 13 11 26 26 C 1.52908 * 121.13325 * 100.90257 * 25 14 13 27 27 C 1.53949 * 86.78327 * 100.81865 * 26 25 14 28 28 C 1.52905 * 121.13459 * 209.46360 * 25 14 13 29 29 C 1.41292 * 107.16664 * 359.60563 * 7 6 5 30 30 N 1.30446 * 108.02706 * 0.24765 * 29 7 6 31 31 H 1.09000 * 109.47041 * 300.00183 * 1 2 3 32 32 H 1.09004 * 109.47511 * 59.99940 * 1 2 3 33 33 H 1.08997 * 109.47207 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.46680 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47602 * 299.99727 * 3 2 1 36 36 H 1.09000 * 109.47600 * 60.00159 * 3 2 1 37 37 H 1.09007 * 109.46973 * 299.99844 * 4 2 1 38 38 H 1.09004 * 109.47526 * 59.99910 * 4 2 1 39 39 H 1.08995 * 109.47061 * 179.97438 * 4 2 1 40 40 H 1.08001 * 126.29008 * 359.97438 * 6 5 2 41 41 H 0.96995 * 120.00015 * 359.72347 * 10 8 7 42 42 H 1.09005 * 113.57683 * 335.39921 * 13 11 10 43 43 H 1.08994 * 113.58477 * 106.19241 * 13 11 10 44 44 H 0.96994 * 119.99823 * 287.74691 * 16 14 13 45 45 H 0.96995 * 120.00569 * 180.02562 * 20 19 17 46 46 H 1.09001 * 113.66448 * 215.28804 * 26 25 14 47 47 H 1.08997 * 113.66579 * 346.34339 * 26 25 14 48 48 H 1.09001 * 113.58022 * 270.13037 * 27 26 25 49 49 H 1.08999 * 113.65461 * 139.34313 * 27 26 25 50 50 H 1.09004 * 113.66854 * 13.65127 * 28 25 14 51 51 H 1.09003 * 113.66725 * 144.62203 * 28 25 14 52 52 H 1.07997 * 125.98475 * 180.20137 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6905 1.1962 6 6 2.0186 -2.0191 1.3898 7 6 2.5565 -2.2545 2.6392 8 6 2.7503 -3.5705 3.2748 9 8 2.4177 -4.5832 2.6897 10 7 3.2962 -3.6510 4.5045 11 6 3.4883 -4.9587 5.1363 12 1 3.5794 -5.7695 4.4136 13 6 2.4877 -5.2506 6.2693 14 6 3.6669 -5.8608 7.0523 15 1 3.8083 -6.9261 6.8701 16 7 3.6664 -5.5218 8.4775 17 6 3.3480 -6.4747 9.4079 18 1 3.0976 -7.4764 9.0911 19 6 3.3471 -6.1533 10.7583 20 7 3.6517 -4.9325 11.1445 21 14 2.9134 -7.4534 12.0275 22 1 3.8734 -8.5820 11.9281 23 1 2.9857 -6.8612 13.3874 24 1 1.5369 -7.9508 11.7762 25 6 4.5778 -4.9678 6.2093 26 6 5.1457 -3.6637 6.7704 27 6 6.4571 -4.4359 7.0024 28 6 6.0102 -5.3878 5.8780 29 6 2.8922 -0.9983 3.1921 30 7 2.5684 -0.0770 2.3272 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2073 -2.1393 39 1 3.1300 -0.7208 -1.2495 40 1 1.6609 -2.7662 0.6968 41 1 3.5652 -2.8435 4.9696 42 1 2.0766 -4.3523 6.7301 43 1 1.7210 -5.9762 5.9978 44 1 3.8916 -4.6223 8.7621 45 1 3.6515 -4.7079 12.0881 46 1 5.2312 -2.8690 6.0293 47 1 4.6622 -3.3361 7.6907 48 1 6.5148 -4.9133 7.9806 49 1 7.3513 -3.8624 6.7584 50 1 6.2174 -6.4377 6.0855 51 1 6.3382 -5.0792 4.8854 52 1 3.3379 -0.8303 4.1613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078663626.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:10 Heat of formation + Delta-G solvation = 90.658382 kcal Electronic energy + Delta-G solvation = -30642.862809 eV Core-core repulsion = 26645.665934 eV Total energy + Delta-G solvation = -3997.196875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.69678 -40.41492 -38.55863 -37.07233 -34.76921 -34.02629 -32.44644 -31.04694 -30.43745 -29.57661 -27.99780 -27.84743 -25.44520 -24.89840 -24.08928 -23.44528 -22.50633 -21.50847 -20.38868 -20.03006 -19.58136 -18.07194 -17.67728 -16.84953 -16.24480 -15.97495 -15.77184 -15.04322 -15.00641 -14.75250 -14.55082 -14.50090 -14.33700 -13.87802 -13.79132 -13.09806 -12.97961 -12.82835 -12.78013 -12.73384 -12.60423 -12.39302 -12.30779 -12.01907 -11.80470 -11.73528 -11.71936 -11.44570 -11.18432 -11.10399 -10.85699 -10.73583 -10.65508 -10.19093 -10.00614 -9.88225 -9.78873 -9.77011 -9.53878 -9.38415 -8.90044 -8.81605 -8.47104 -6.94193 -5.77621 -3.05590 1.42214 2.00700 2.08012 3.44711 3.46852 3.49602 3.50910 3.57299 3.92536 4.18811 4.29616 4.48165 4.55893 4.60268 4.86939 4.90613 4.94649 5.01286 5.03197 5.10758 5.13341 5.14121 5.20290 5.26436 5.29664 5.30980 5.32406 5.45063 5.50556 5.59271 5.62119 5.73576 5.74618 5.96123 5.99733 6.03656 6.06201 6.12445 6.25255 6.30899 6.38142 6.46559 6.57619 6.64346 6.66994 6.73866 6.91848 6.99498 7.14615 7.37012 7.71276 7.82408 8.41399 8.49432 9.52949 10.10189 10.45250 11.44643 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.002112 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.270199 B =13256.279690 C =13457.452626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.143 4.143 4 C -0.162 4.162 5 N -0.352 5.352 6 C 0.125 3.875 7 C -0.289 4.289 8 C 0.592 3.408 9 O -0.558 6.558 10 N -0.707 5.707 11 C 0.134 3.866 12 H 0.109 0.891 13 C -0.174 4.174 14 C 0.192 3.808 15 H 0.081 0.919 16 N -0.705 5.705 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.130 4.130 28 C -0.126 4.126 29 C 0.078 3.922 30 N -0.294 5.294 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.183 0.817 41 H 0.397 0.603 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.055 0.945 50 H 0.066 0.934 51 H 0.071 0.929 52 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.238 12.111 -24.833 27.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 C -0.201 4.201 4 C -0.221 4.221 5 N -0.132 5.132 6 C -0.026 4.026 7 C -0.304 4.304 8 C 0.380 3.620 9 O -0.437 6.437 10 N -0.356 5.356 11 C 0.029 3.971 12 H 0.127 0.873 13 C -0.216 4.216 14 C 0.079 3.921 15 H 0.099 0.901 16 N -0.344 5.344 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.121 4.121 26 C -0.154 4.154 27 C -0.167 4.167 28 C -0.164 4.164 29 C -0.109 4.109 30 N -0.113 5.113 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.200 0.800 41 H 0.232 0.768 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.222 0.778 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.074 0.926 50 H 0.084 0.916 51 H 0.090 0.910 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.584 12.586 -25.447 28.433 hybrid contribution -0.115 -0.850 1.272 1.534 sum -1.699 11.736 -24.175 26.926 Atomic orbital electron populations 1.22287 0.92573 1.03434 1.03638 1.20853 0.94653 0.93950 0.81123 1.21916 1.02283 0.92638 1.03259 1.22286 1.02554 1.01240 0.95982 1.48818 1.46115 1.04163 1.14129 1.22815 0.96427 0.86373 0.96972 1.20344 1.17909 0.94411 0.97747 1.17260 0.76786 0.87093 0.80873 1.90742 1.52020 1.36831 1.64105 1.45741 1.62814 1.09890 1.17125 1.22251 0.97288 0.84958 0.92609 0.87336 1.24302 0.98838 1.01762 0.96730 1.21097 0.90872 0.95688 0.84422 0.90120 1.42333 1.80976 1.12185 0.98917 1.19257 1.38706 0.92312 0.87014 0.91136 1.24734 1.02444 0.96587 0.97050 1.69638 1.55145 1.17983 1.15300 0.86276 0.78252 0.80780 0.80927 1.21279 1.21771 1.21278 1.23591 0.93053 0.98768 0.96734 1.22421 0.97140 0.95082 1.00768 1.22725 0.96146 0.97977 0.99872 1.22703 0.95791 0.99818 0.98052 1.24083 0.97968 0.89757 0.99124 1.77130 1.17940 1.21902 0.94334 0.91369 0.90142 0.91568 0.91514 0.90815 0.90818 0.91312 0.89807 0.91302 0.80029 0.76783 0.90217 0.92178 0.77774 0.93458 0.91164 0.90303 0.89169 0.92595 0.91552 0.91025 0.79501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 8.72 37.16 0.32 -0.56 16 2 C 0.18 1.15 1.23 -131.82 -0.16 0.99 16 3 C -0.14 -0.86 8.07 37.16 0.30 -0.56 16 4 C -0.16 -0.77 8.28 37.16 0.31 -0.47 16 5 N -0.35 -3.39 3.41 -48.11 -0.16 -3.56 16 6 C 0.13 1.33 10.39 -16.56 -0.17 1.16 16 7 C -0.29 -3.57 6.13 -105.07 -0.64 -4.21 16 8 C 0.59 8.78 7.81 -12.52 -0.10 8.68 16 9 O -0.56 -10.05 16.52 5.28 0.09 -9.97 16 10 N -0.71 -9.75 5.27 -54.45 -0.29 -10.04 16 11 C 0.13 2.09 4.09 -67.48 -0.28 1.82 16 12 H 0.11 1.79 7.50 -51.93 -0.39 1.40 16 13 C -0.17 -3.12 7.70 -25.64 -0.20 -3.32 16 14 C 0.19 3.74 4.36 -67.38 -0.29 3.44 16 15 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 16 N -0.71 -16.92 5.33 -52.89 -0.28 -17.20 16 17 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 21 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C -0.12 -1.89 1.07 -154.71 -0.16 -2.05 16 26 C -0.12 -1.76 6.78 -26.28 -0.18 -1.93 16 27 C -0.13 -1.99 8.08 -25.75 -0.21 -2.20 16 28 C -0.13 -1.86 7.84 -26.28 -0.21 -2.06 16 29 C 0.08 0.86 11.50 -16.98 -0.20 0.67 16 30 N -0.29 -3.33 11.56 30.86 0.36 -2.97 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.53 8.03 -51.93 -0.42 0.12 16 37 H 0.07 0.31 7.34 -51.93 -0.38 -0.07 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.18 1.61 7.52 -52.49 -0.39 1.22 16 41 H 0.40 4.71 5.92 -40.82 -0.24 4.47 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.39 9.73 5.92 -40.82 -0.24 9.49 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.07 0.88 6.99 -51.93 -0.36 0.51 16 47 H 0.08 1.38 6.42 -51.93 -0.33 1.04 16 48 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 52 H 0.19 1.58 7.50 -52.49 -0.39 1.18 16 LS Contribution 416.78 15.07 6.28 6.28 Total: -1.00 -32.69 416.78 -9.04 -41.73 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -8.62 Total: 13.04 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.11 Total: -7.74 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.35 Total: -60.53 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.69 -9.04 -41.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078663626.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.386 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds