Wall clock time and date at job start Wed Apr 1 2020 05:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46638 * 2 1 4 4 C 1.52994 * 109.47232 * 239.99787 * 2 1 3 5 5 N 1.46504 * 109.46878 * 119.99481 * 2 1 3 6 6 C 1.34254 * 125.75056 * 75.31570 * 5 2 1 7 7 C 1.38040 * 107.41862 * 180.10934 * 6 5 2 8 8 C 1.47424 * 126.42084 * 179.87269 * 7 6 5 9 9 O 1.21600 * 119.99805 * 359.70341 * 8 7 6 10 10 N 1.34779 * 120.00461 * 179.71094 * 8 7 6 11 11 C 1.46497 * 120.00173 * 179.97438 * 10 8 7 12 12 H 1.09002 * 112.88192 * 26.84189 * 11 10 8 13 13 C 1.53943 * 113.66372 * 255.49354 * 11 10 8 14 14 C 1.53957 * 87.29592 * 220.69986 * 13 11 10 15 15 H 1.08999 * 113.65708 * 139.29842 * 14 13 11 16 16 N 1.46499 * 113.66469 * 270.26501 * 14 13 11 17 17 C 1.36939 * 119.99933 * 255.76878 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31612 * 120.00054 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99751 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47517 * 89.99708 * 21 19 17 23 23 H 1.48502 * 109.46736 * 209.99481 * 21 19 17 24 24 H 1.48496 * 109.47375 * 329.99177 * 21 19 17 25 25 C 1.52909 * 86.77904 * 24.73790 * 14 13 11 26 26 C 1.52905 * 121.13976 * 209.38147 * 25 14 13 27 27 C 1.53951 * 86.78325 * 209.37453 * 26 25 14 28 28 C 1.52905 * 121.13949 * 100.81402 * 25 14 13 29 29 C 1.41295 * 107.16784 * 359.60573 * 7 6 5 30 30 N 1.30453 * 108.02300 * 0.24164 * 29 7 6 31 31 H 1.08992 * 109.47411 * 300.00340 * 1 2 3 32 32 H 1.08998 * 109.46741 * 60.00524 * 1 2 3 33 33 H 1.08996 * 109.46899 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.47113 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47521 * 299.99264 * 3 2 1 36 36 H 1.09003 * 109.47572 * 60.00220 * 3 2 1 37 37 H 1.08996 * 109.47415 * 299.99973 * 4 2 1 38 38 H 1.08998 * 109.47511 * 60.00160 * 4 2 1 39 39 H 1.08999 * 109.47210 * 180.02562 * 4 2 1 40 40 H 1.07998 * 126.29464 * 359.95225 * 6 5 2 41 41 H 0.97001 * 119.99332 * 359.97438 * 10 8 7 42 42 H 1.09007 * 113.58319 * 106.09980 * 13 11 10 43 43 H 1.09001 * 113.65455 * 335.31422 * 13 11 10 44 44 H 0.97001 * 119.99790 * 75.48851 * 16 14 13 45 45 H 0.96998 * 120.00381 * 180.02562 * 20 19 17 46 46 H 1.09005 * 113.66191 * 323.84405 * 26 25 14 47 47 H 1.08999 * 113.66553 * 94.89899 * 26 25 14 48 48 H 1.09001 * 113.58062 * 270.12702 * 27 26 25 49 49 H 1.09006 * 113.65276 * 139.34895 * 27 26 25 50 50 H 1.09000 * 113.66438 * 265.09198 * 28 25 14 51 51 H 1.08995 * 113.66448 * 36.15502 * 28 25 14 52 52 H 1.08001 * 125.99269 * 180.24696 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6905 1.1963 6 6 2.0194 -2.0191 1.3896 7 6 2.5576 -2.2545 2.6388 8 6 2.7523 -3.5705 3.2741 9 8 2.4200 -4.5832 2.6889 10 7 3.2984 -3.6511 4.5037 11 6 3.4914 -4.9588 5.1352 12 1 3.6089 -5.7656 4.4118 13 6 2.4682 -5.2667 6.2434 14 6 3.6329 -5.8688 7.0505 15 1 3.6024 -5.6233 8.1120 16 7 3.8443 -7.2969 6.8017 17 6 3.4408 -8.2205 7.7288 18 1 2.9707 -7.8957 8.6453 19 6 3.6358 -9.5740 7.4905 20 7 3.2484 -10.4616 8.3817 21 14 4.4494 -10.1355 5.9055 22 1 5.9191 -10.2124 6.1037 23 1 3.9299 -11.4751 5.5301 24 1 4.1460 -9.1657 4.8227 25 6 4.5539 -4.9608 6.2348 26 6 5.9990 -5.3624 5.9371 27 6 6.3204 -3.8570 5.9104 28 6 5.0924 -3.6531 6.8162 29 6 2.8927 -0.9983 3.1920 30 7 2.5684 -0.0769 2.3272 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9564 -0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.6768 -1.7489 -1.2492 38 1 1.6768 -0.2075 -2.1392 39 1 3.1301 -0.7217 -1.2489 40 1 1.6622 -2.7662 0.6964 41 1 3.5638 -2.8432 4.9703 42 1 1.7158 -5.9993 5.9511 43 1 2.0362 -4.3760 6.6996 44 1 4.2665 -7.5885 5.9785 45 1 3.3850 -11.4074 8.2154 46 1 6.4814 -5.8982 6.7547 47 1 6.1266 -5.8542 4.9728 48 1 6.2143 -3.4059 4.9238 49 1 7.2647 -3.6028 6.3921 50 1 4.4958 -2.7793 6.5541 51 1 5.3200 -3.7085 7.8807 52 1 3.3392 -0.8302 4.1609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078663627.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:21 Heat of formation + Delta-G solvation = 96.058828 kcal Electronic energy + Delta-G solvation = -30857.545580 eV Core-core repulsion = 26860.582885 eV Total energy + Delta-G solvation = -3996.962695 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.75569 -40.62358 -38.58622 -37.11141 -35.18029 -34.03534 -32.41629 -31.10805 -30.58840 -29.84472 -28.02785 -27.89032 -25.64439 -25.04945 -24.24522 -23.26230 -22.59405 -21.90604 -20.15205 -20.11627 -19.67983 -18.47231 -17.76616 -17.12369 -16.22542 -15.95405 -15.81946 -15.26425 -15.09252 -14.92002 -14.66968 -14.50191 -14.30628 -13.87864 -13.82590 -13.15523 -12.97426 -12.84097 -12.79335 -12.77578 -12.70943 -12.48276 -12.34100 -12.19518 -11.99458 -11.96647 -11.78945 -11.76076 -11.63474 -11.15993 -11.03967 -10.87240 -10.72669 -10.21264 -10.10949 -9.90527 -9.82842 -9.73793 -9.57711 -9.42997 -8.95498 -8.83633 -8.57519 -7.24220 -5.75563 -3.11234 1.37713 1.95424 2.01644 3.40689 3.41433 3.46440 3.49238 3.52960 3.88227 4.15279 4.26071 4.44053 4.49523 4.61624 4.63902 4.70596 4.87686 4.87922 4.90887 4.98166 5.05756 5.08051 5.09127 5.16258 5.22511 5.25127 5.25691 5.42028 5.42260 5.51548 5.58577 5.60979 5.63046 5.69072 5.77387 5.87813 5.95312 5.98742 6.02783 6.19254 6.20858 6.28700 6.39261 6.57982 6.59273 6.64556 6.70446 6.78715 7.01984 7.30722 7.74927 8.01975 8.44060 8.45686 9.22176 9.94713 10.13920 11.42461 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017569 B = 0.002390 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.367257 B =11712.932160 C =12422.322602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.143 4.143 4 C -0.163 4.163 5 N -0.351 5.351 6 C 0.126 3.874 7 C -0.289 4.289 8 C 0.591 3.409 9 O -0.550 6.550 10 N -0.712 5.712 11 C 0.154 3.846 12 H 0.111 0.889 13 C -0.181 4.181 14 C 0.191 3.809 15 H 0.075 0.925 16 N -0.726 5.726 17 C -0.244 4.244 18 H 0.092 0.908 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.880 3.120 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.275 1.275 25 C -0.129 4.129 26 C -0.120 4.120 27 C -0.140 4.140 28 C -0.108 4.108 29 C 0.077 3.923 30 N -0.294 5.294 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.183 0.817 41 H 0.395 0.605 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.363 0.637 45 H 0.260 0.740 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.063 0.937 50 H 0.060 0.940 51 H 0.088 0.912 52 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 26.876 -16.948 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 C -0.201 4.201 4 C -0.221 4.221 5 N -0.132 5.132 6 C -0.025 4.025 7 C -0.304 4.304 8 C 0.378 3.622 9 O -0.429 6.429 10 N -0.362 5.362 11 C 0.050 3.950 12 H 0.129 0.871 13 C -0.223 4.223 14 C 0.079 3.921 15 H 0.093 0.907 16 N -0.366 5.366 17 C -0.374 4.374 18 H 0.110 0.890 19 C -0.189 4.189 20 N -0.580 5.580 21 Si 0.710 3.290 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.201 1.201 25 C -0.131 4.131 26 C -0.158 4.158 27 C -0.178 4.178 28 C -0.146 4.146 29 C -0.111 4.111 30 N -0.114 5.114 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.200 0.800 41 H 0.230 0.770 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.196 0.804 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.082 0.918 50 H 0.079 0.921 51 H 0.106 0.894 52 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.923 27.325 -17.517 32.471 hybrid contribution 0.603 -1.097 -0.750 1.459 sum -0.320 26.228 -18.267 31.964 Atomic orbital electron populations 1.22286 0.92537 1.03483 1.03631 1.20865 0.94675 0.93933 0.81106 1.21917 1.02272 0.92631 1.03254 1.22290 1.02567 1.01294 0.95974 1.48814 1.46072 1.04156 1.14110 1.22840 0.96281 0.86370 0.96986 1.20340 1.17913 0.94353 0.97788 1.17284 0.76903 0.87142 0.80891 1.90785 1.51445 1.36793 1.63872 1.45835 1.63302 1.09756 1.17278 1.22241 0.95701 0.84748 0.92347 0.87142 1.24265 0.99296 1.00898 0.97842 1.20740 0.91273 0.83721 0.96406 0.90721 1.42443 1.72231 1.00305 1.21587 1.19074 1.32877 0.86384 0.99019 0.89025 1.24646 1.00918 0.95688 0.97625 1.69691 1.52381 1.00874 1.35014 0.86613 0.79604 0.78192 0.84626 1.21006 1.21702 1.20079 1.23484 0.94231 0.97824 0.97549 1.22615 0.95616 0.95545 1.02016 1.22856 0.97795 0.97527 0.99580 1.22505 0.96615 0.95601 0.99852 1.24035 0.98149 0.89760 0.99109 1.77112 1.17939 1.21941 0.94358 0.91392 0.90107 0.91531 0.91524 0.90782 0.90847 0.91275 0.89761 0.91294 0.79979 0.76987 0.90757 0.90859 0.80356 0.93035 0.89273 0.91975 0.90748 0.91819 0.92137 0.89352 0.79625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 8.72 37.16 0.32 -0.52 16 2 C 0.18 1.10 1.23 -131.82 -0.16 0.94 16 3 C -0.14 -0.80 8.07 37.16 0.30 -0.50 16 4 C -0.16 -0.78 8.28 37.15 0.31 -0.47 16 5 N -0.35 -3.25 3.41 -48.11 -0.16 -3.42 16 6 C 0.13 1.33 10.39 -16.56 -0.17 1.16 16 7 C -0.29 -3.45 6.13 -105.07 -0.64 -4.09 16 8 C 0.59 8.76 7.81 -12.52 -0.10 8.66 16 9 O -0.55 -10.43 16.54 5.28 0.09 -10.34 16 10 N -0.71 -9.36 5.30 -54.45 -0.29 -9.65 16 11 C 0.15 2.47 4.00 -67.49 -0.27 2.20 16 12 H 0.11 2.12 7.54 -51.93 -0.39 1.73 16 13 C -0.18 -3.13 7.68 -25.75 -0.20 -3.33 16 14 C 0.19 3.59 4.35 -67.48 -0.29 3.29 16 15 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 16 N -0.73 -17.00 4.92 -52.99 -0.26 -17.27 16 17 C -0.24 -6.82 10.46 -15.06 -0.16 -6.98 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -29.34 13.97 55.49 0.78 -28.57 16 21 Si 0.88 22.46 27.74 -169.99 -4.71 17.75 16 22 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.27 -6.75 6.52 56.52 0.37 -6.38 16 25 C -0.13 -1.92 0.91 -154.71 -0.14 -2.06 16 26 C -0.12 -1.77 7.43 -26.28 -0.20 -1.97 16 27 C -0.14 -1.60 8.08 -25.75 -0.21 -1.81 16 28 C -0.11 -1.24 7.45 -26.28 -0.20 -1.43 16 29 C 0.08 0.78 11.50 -16.98 -0.20 0.58 16 30 N -0.29 -3.11 11.56 30.86 0.36 -2.75 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.49 8.03 -51.93 -0.42 0.07 16 37 H 0.07 0.33 7.33 -51.93 -0.38 -0.05 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.18 1.65 7.52 -52.49 -0.39 1.26 16 41 H 0.39 4.04 5.63 -40.82 -0.23 3.81 16 42 H 0.07 1.49 8.14 -51.92 -0.42 1.07 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.36 8.55 5.60 -40.82 -0.23 8.32 16 45 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 46 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 51 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 52 H 0.19 1.30 7.50 -52.49 -0.39 0.90 16 LS Contribution 416.23 15.07 6.27 6.27 Total: -1.00 -34.79 416.23 -8.73 -43.53 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.70 Total: 10.67 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.09 Total: -6.22 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.42 Total: -61.65 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.79 -8.73 -43.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078663627.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.585 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds