Wall clock time and date at job start Wed Apr 1 2020 05:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47471 * 2 1 4 4 C 1.53001 * 109.47315 * 119.99928 * 2 1 3 5 5 N 1.46503 * 109.47078 * 174.99644 * 4 2 1 6 6 C 1.34260 * 125.75347 * 125.00303 * 5 4 2 7 7 C 1.38040 * 107.42158 * 179.97438 * 6 5 4 8 8 C 1.47422 * 126.41516 * 179.97438 * 7 6 5 9 9 O 1.21600 * 120.00493 * 0.02562 * 8 7 6 10 10 N 1.34788 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99608 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.89026 * 336.34205 * 11 10 8 13 13 C 1.53952 * 113.66332 * 107.81166 * 11 10 8 14 14 C 1.53954 * 87.29718 * 139.20088 * 13 11 10 15 15 H 1.09002 * 113.74607 * 89.75069 * 14 13 11 16 16 N 1.46498 * 113.66167 * 220.79713 * 14 13 11 17 17 C 1.36943 * 119.99752 * 251.90877 * 16 14 13 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 14 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 14 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 C 1.52909 * 86.78194 * 335.27068 * 14 13 11 26 26 C 1.52916 * 121.13545 * 259.17990 * 25 14 13 27 27 C 1.53944 * 86.78375 * 209.37932 * 26 25 14 28 28 C 1.52903 * 121.13947 * 150.62172 * 25 14 13 29 29 C 1.41290 * 107.16552 * 0.22948 * 7 6 5 30 30 N 1.30445 * 108.02611 * 359.61235 * 29 7 6 31 31 H 1.09003 * 109.46416 * 299.99947 * 1 2 3 32 32 H 1.09001 * 109.46903 * 59.99595 * 1 2 3 33 33 H 1.08997 * 109.47150 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47313 * 240.00179 * 2 1 3 35 35 H 1.08996 * 109.47001 * 300.00346 * 3 2 1 36 36 H 1.09002 * 109.46706 * 59.99807 * 3 2 1 37 37 H 1.08994 * 109.47557 * 179.97438 * 3 2 1 38 38 H 1.09004 * 109.47090 * 55.00004 * 4 2 1 39 39 H 1.08995 * 109.47552 * 295.00125 * 4 2 1 40 40 H 1.08006 * 126.28527 * 359.96002 * 6 5 4 41 41 H 0.96999 * 119.99884 * 359.97438 * 10 8 7 42 42 H 1.09000 * 113.57696 * 24.60228 * 13 11 10 43 43 H 1.08997 * 113.58404 * 253.80753 * 13 11 10 44 44 H 0.97001 * 120.00384 * 72.19233 * 16 14 13 45 45 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 46 46 H 1.09003 * 113.66006 * 323.85283 * 26 25 14 47 47 H 1.09000 * 113.66434 * 94.90668 * 26 25 14 48 48 H 1.08999 * 113.58449 * 270.13378 * 27 26 25 49 49 H 1.09000 * 113.58404 * 139.33091 * 27 26 25 50 50 H 1.09002 * 113.66292 * 265.08700 * 28 25 14 51 51 H 1.09002 * 113.66630 * 36.13814 * 28 25 14 52 52 H 1.08003 * 125.98797 * 179.73775 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.3561 -0.3964 2.1312 7 6 5.6324 -0.6848 1.6915 8 6 6.8901 -0.3911 2.4023 9 8 6.8617 0.1577 3.4870 10 7 8.0716 -0.7310 1.8498 11 6 9.3214 -0.4397 2.5564 12 1 9.2238 0.3774 3.2711 13 6 10.0105 -1.6894 3.1338 14 6 11.3454 -1.0778 2.6709 15 1 11.8188 -0.4407 3.4180 16 7 12.2685 -2.0542 2.0873 17 6 13.3883 -2.4352 2.7774 18 1 13.5885 -2.0192 3.7537 19 6 14.2660 -3.3561 2.2220 20 7 14.0221 -3.8627 1.0318 21 14 15.7931 -3.8763 3.1635 22 1 15.8361 -3.1673 4.4676 23 1 15.7543 -5.3421 3.3987 24 1 17.0027 -3.5337 2.3731 25 6 10.5320 -0.3050 1.6320 26 6 10.4693 -0.7651 0.1751 27 6 10.2780 0.7171 -0.1942 28 6 10.9918 1.0625 1.1255 29 6 5.5078 -1.3087 0.4300 30 7 4.2377 -1.3925 0.1447 31 1 -0.3632 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6054 -1.7198 1.2952 39 1 1.7517 -0.1584 2.1370 40 1 4.0941 0.0867 3.0610 41 1 8.0943 -1.1691 0.9847 42 1 9.7495 -2.6109 2.6134 43 1 9.9223 -1.7748 4.2168 44 1 12.0887 -2.4278 1.2104 45 1 14.6353 -4.5065 0.6439 46 1 11.4044 -1.1898 -0.1902 47 1 9.6033 -1.3874 -0.0503 48 1 9.2339 1.0289 -0.2196 49 1 10.8326 1.0204 -1.0821 50 1 10.5431 1.9002 1.6593 51 1 12.0737 1.1516 1.0274 52 1 6.3215 -1.6573 -0.1888 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078763405.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:27 Heat of formation + Delta-G solvation = 85.107174 kcal Electronic energy + Delta-G solvation = -30408.293615 eV Core-core repulsion = 26410.856021 eV Total energy + Delta-G solvation = -3997.437594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.62138 -40.47104 -38.48487 -36.87445 -34.84950 -34.03240 -32.74247 -32.12380 -30.49635 -29.68298 -27.70976 -27.00507 -25.47349 -24.72638 -24.08373 -23.16327 -22.06697 -21.30839 -20.57960 -20.33514 -19.77459 -18.41597 -17.54198 -17.07738 -16.29739 -16.00258 -15.97682 -15.23447 -15.07795 -14.94740 -14.61618 -14.47640 -14.42795 -13.84149 -13.78755 -13.38150 -13.09290 -12.94988 -12.83103 -12.77114 -12.52848 -12.40313 -12.05503 -11.81156 -11.76290 -11.56142 -11.47380 -11.44825 -11.26231 -11.08069 -10.94588 -10.76703 -10.68072 -10.17293 -10.03722 -9.92125 -9.80270 -9.79086 -9.58012 -9.37584 -8.92496 -8.79541 -8.52644 -6.93126 -5.77970 -3.05669 1.38572 2.03675 2.06075 3.43475 3.44446 3.50362 3.51832 3.54205 3.94500 4.23647 4.38482 4.50065 4.58692 4.60609 4.72851 4.81231 4.91765 4.96580 5.01155 5.05567 5.08885 5.11025 5.20773 5.22275 5.31759 5.32443 5.37629 5.49518 5.53969 5.56073 5.69266 5.73098 5.77998 5.91406 5.96897 6.05750 6.06587 6.17176 6.21434 6.22587 6.31980 6.38131 6.44565 6.56997 6.66623 6.67981 6.83486 6.98162 7.13695 7.31900 7.72351 7.79767 8.41209 8.46354 9.52840 10.10687 10.45594 11.44553 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.002013 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.536866 B =13908.170037 C =14064.792197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.148 4.148 4 C 0.133 3.867 5 N -0.359 5.359 6 C 0.124 3.876 7 C -0.289 4.289 8 C 0.593 3.407 9 O -0.557 6.557 10 N -0.707 5.707 11 C 0.148 3.852 12 H 0.111 0.889 13 C -0.174 4.174 14 C 0.181 3.819 15 H 0.080 0.920 16 N -0.706 5.706 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.124 4.124 26 C -0.107 4.107 27 C -0.140 4.140 28 C -0.122 4.122 29 C 0.081 3.919 30 N -0.294 5.294 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.185 0.815 41 H 0.397 0.603 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.386 0.614 45 H 0.254 0.746 46 H 0.097 0.903 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.060 0.940 51 H 0.085 0.915 52 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.344 9.962 -3.304 28.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.206 4.206 4 C 0.012 3.988 5 N -0.137 5.137 6 C -0.027 4.027 7 C -0.304 4.304 8 C 0.380 3.620 9 O -0.437 6.437 10 N -0.357 5.357 11 C 0.043 3.957 12 H 0.129 0.871 13 C -0.217 4.217 14 C 0.068 3.932 15 H 0.098 0.902 16 N -0.344 5.344 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.127 4.127 26 C -0.145 4.145 27 C -0.177 4.177 28 C -0.159 4.159 29 C -0.107 4.107 30 N -0.114 5.114 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.202 0.798 41 H 0.233 0.767 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.221 0.779 45 H 0.064 0.936 46 H 0.116 0.884 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.104 0.896 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -27.201 9.919 -3.274 29.137 hybrid contribution 1.370 -0.536 0.368 1.517 sum -25.831 9.383 -2.905 27.635 Atomic orbital electron populations 1.21791 0.93750 1.02293 1.02545 1.21429 0.96296 0.96984 0.98128 1.21840 1.01487 0.95158 1.02100 1.21987 0.73986 1.02510 1.00272 1.48529 1.06830 1.44171 1.14204 1.22950 0.89063 0.95973 0.94701 1.20334 0.93774 1.16962 0.99339 1.17249 0.82578 0.77668 0.84474 1.90746 1.87546 1.44069 1.21298 1.45785 1.05377 1.61236 1.23282 1.22133 0.79954 0.99306 0.94338 0.87112 1.24286 0.99709 0.97248 1.00415 1.21159 0.88095 0.90683 0.93285 0.90212 1.42324 1.23961 1.47464 1.20688 1.19367 0.98668 1.19253 0.99839 0.91003 1.24741 0.99257 1.00023 0.96921 1.69664 1.38308 1.33837 1.16302 0.86127 0.83136 0.78071 0.78924 1.20527 1.21943 1.21928 1.23489 0.96538 0.97140 0.95532 1.22442 1.02265 0.95581 0.94229 1.22832 1.00073 0.97095 0.97726 1.22672 1.00675 0.96198 0.96401 1.24086 0.94595 0.96987 0.95054 1.77135 1.04297 1.19957 1.09994 0.92308 0.91800 0.92202 0.89392 0.92154 0.92552 0.92573 0.89289 0.88315 0.79764 0.76694 0.90207 0.92170 0.77885 0.93576 0.88436 0.92557 0.90991 0.91975 0.92140 0.89640 0.79484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.19 37.16 0.34 -0.20 16 2 C -0.11 -0.60 3.00 -90.62 -0.27 -0.88 16 3 C -0.15 -0.91 9.08 37.16 0.34 -0.57 16 4 C 0.13 0.75 5.88 -4.04 -0.02 0.73 16 5 N -0.36 -3.24 3.10 -60.81 -0.19 -3.43 16 6 C 0.12 1.24 11.25 -16.56 -0.19 1.06 16 7 C -0.29 -3.43 6.13 -105.07 -0.64 -4.08 16 8 C 0.59 8.57 7.81 -12.52 -0.10 8.47 16 9 O -0.56 -9.84 16.50 5.28 0.09 -9.75 16 10 N -0.71 -9.56 5.27 -54.45 -0.29 -9.85 16 11 C 0.15 2.28 4.12 -67.48 -0.28 2.00 16 12 H 0.11 1.80 7.46 -51.93 -0.39 1.42 16 13 C -0.17 -3.10 7.68 -25.75 -0.20 -3.30 16 14 C 0.18 3.51 4.36 -67.48 -0.29 3.22 16 15 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 16 N -0.71 -17.03 5.30 -52.99 -0.28 -17.31 16 17 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 21 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 C -0.12 -1.96 1.06 -154.71 -0.16 -2.13 16 26 C -0.11 -1.61 6.78 -26.28 -0.18 -1.79 16 27 C -0.14 -1.83 8.08 -25.75 -0.21 -2.04 16 28 C -0.12 -1.78 7.84 -26.28 -0.21 -1.98 16 29 C 0.08 0.86 11.50 -16.98 -0.20 0.66 16 30 N -0.29 -3.22 12.24 30.86 0.38 -2.84 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.64 8.04 -51.93 -0.42 0.22 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.35 8.06 -51.93 -0.42 -0.07 16 40 H 0.19 1.47 8.06 -52.48 -0.42 1.05 16 41 H 0.40 4.66 5.68 -40.82 -0.23 4.43 16 42 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.39 9.76 6.23 -40.82 -0.25 9.51 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.10 1.73 7.03 -51.93 -0.36 1.36 16 47 H 0.06 0.74 6.42 -51.93 -0.33 0.41 16 48 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 52 H 0.19 1.54 7.50 -52.48 -0.39 1.15 16 LS Contribution 419.75 15.07 6.33 6.33 Total: -1.00 -32.84 419.75 -9.44 -42.28 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -8.67 Total: 12.23 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.51 Total: -8.00 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.35 Total: -60.31 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.84 -9.44 -42.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078763405.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.387 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds