Wall clock time and date at job start Wed Apr 1 2020 05:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47393 * 2 1 4 4 C 1.53002 * 109.46727 * 119.99741 * 2 1 3 5 5 N 1.46504 * 109.46850 * 174.99798 * 4 2 1 6 6 C 1.34261 * 125.75320 * 125.00374 * 5 4 2 7 7 C 1.38041 * 107.41870 * 179.97438 * 6 5 4 8 8 C 1.47426 * 126.41525 * 179.97438 * 7 6 5 9 9 O 1.21601 * 120.00001 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99972 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99873 * 179.97438 * 10 8 7 12 12 H 1.08999 * 112.88689 * 333.16280 * 11 10 8 13 13 C 1.53949 * 113.65880 * 104.50814 * 11 10 8 14 14 C 1.53950 * 87.29499 * 139.20742 * 13 11 10 15 15 H 1.09005 * 113.66162 * 220.79794 * 14 13 11 16 16 N 1.46494 * 113.66585 * 89.82898 * 14 13 11 17 17 C 1.36931 * 120.00392 * 104.50482 * 16 14 13 18 18 H 1.08000 * 119.99907 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00454 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99613 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00155 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46925 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46737 * 120.00265 * 21 19 17 24 24 H 1.48494 * 109.47383 * 240.00425 * 21 19 17 25 25 C 1.52908 * 113.65942 * 201.69530 * 11 10 8 26 26 C 1.52910 * 121.14481 * 94.91187 * 25 11 10 27 27 C 1.53952 * 86.78248 * 209.37302 * 26 25 11 28 28 C 1.52908 * 121.14158 * 346.33930 * 25 11 10 29 29 C 1.41292 * 107.16964 * 0.23871 * 7 6 5 30 30 N 1.30450 * 108.02110 * 359.59262 * 29 7 6 31 31 H 1.09006 * 109.47313 * 300.00211 * 1 2 3 32 32 H 1.09004 * 109.46887 * 59.99811 * 1 2 3 33 33 H 1.08997 * 109.47472 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47212 * 239.99770 * 2 1 3 35 35 H 1.08996 * 109.46921 * 299.99961 * 3 2 1 36 36 H 1.09006 * 109.47063 * 59.99636 * 3 2 1 37 37 H 1.08998 * 109.47434 * 179.97438 * 3 2 1 38 38 H 1.08998 * 109.47177 * 54.99961 * 4 2 1 39 39 H 1.08994 * 109.47621 * 294.99992 * 4 2 1 40 40 H 1.08001 * 126.29132 * 0.02562 * 6 5 4 41 41 H 0.96995 * 120.00018 * 0.27658 * 10 8 7 42 42 H 1.08998 * 113.58134 * 253.80854 * 13 11 10 43 43 H 1.09000 * 113.58372 * 24.60683 * 13 11 10 44 44 H 0.97001 * 120.00028 * 284.50786 * 16 14 13 45 45 H 0.97005 * 119.99923 * 180.02562 * 20 19 17 46 46 H 1.08994 * 113.65683 * 323.84663 * 26 25 11 47 47 H 1.08996 * 113.66119 * 94.89766 * 26 25 11 48 48 H 1.09000 * 113.58137 * 270.12981 * 27 26 25 49 49 H 1.09001 * 113.57758 * 139.33367 * 27 26 25 50 50 H 1.08995 * 113.66428 * 265.10188 * 28 25 11 51 51 H 1.09004 * 113.66085 * 36.16045 * 28 25 11 52 52 H 1.07998 * 125.98589 * 179.73449 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.3559 -0.3964 2.1314 7 6 5.6322 -0.6848 1.6918 8 6 6.8900 -0.3912 2.4026 9 8 6.8615 0.1585 3.4869 10 7 8.0714 -0.7320 1.8507 11 6 9.3213 -0.4397 2.5569 12 1 9.2384 0.4138 3.2298 13 6 9.9686 -1.6770 3.2050 14 6 11.3250 -1.1268 2.7282 15 1 11.9958 -1.8931 2.3396 16 7 11.9735 -0.2402 3.6976 17 6 13.0361 -0.6913 4.4341 18 1 13.3963 -1.7006 4.3001 19 6 13.6509 0.1489 5.3522 20 7 13.2121 1.3791 5.5152 21 14 15.0999 -0.4668 6.3575 22 1 15.3953 -1.8747 5.9891 23 1 16.2896 0.3773 6.0792 24 1 14.7672 -0.3922 7.8027 25 6 10.5450 -0.3857 1.6416 26 6 11.0487 0.9410 1.0722 27 6 11.5602 0.1302 -0.1324 28 6 10.4853 -0.9175 0.2092 29 6 5.5078 -1.3086 0.4301 30 7 4.2376 -1.3926 0.1450 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6052 -1.7197 1.2953 39 1 1.7516 -0.1583 2.1370 40 1 4.0939 0.0857 3.0617 41 1 8.0943 -1.1668 0.9840 42 1 9.8663 -1.7048 4.2898 43 1 9.6873 -2.6162 2.7287 44 1 11.6502 0.6664 3.8177 45 1 13.6420 1.9664 6.1565 46 1 10.2512 1.6405 0.8219 47 1 11.8439 1.3966 1.6623 48 1 12.5798 -0.2354 -0.0107 49 1 11.3987 0.6241 -1.0906 50 1 10.8303 -1.9467 0.1100 51 1 9.5294 -0.7403 -0.2837 52 1 6.3216 -1.6571 -0.1885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078763406.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:35 Heat of formation + Delta-G solvation = 85.834503 kcal Electronic energy + Delta-G solvation = -30375.454873 eV Core-core repulsion = 26378.048819 eV Total energy + Delta-G solvation = -3997.406055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.60095 -40.41470 -38.45580 -36.86100 -34.97443 -33.98140 -32.66173 -32.05340 -30.45625 -29.50767 -27.69477 -26.98831 -25.48840 -24.63754 -24.12487 -23.16761 -22.14844 -21.49751 -20.56161 -20.26734 -19.72693 -18.26594 -17.51790 -16.97561 -16.39805 -16.01001 -15.81107 -15.17189 -15.08325 -14.93916 -14.67610 -14.50556 -14.14357 -13.89838 -13.76013 -13.37458 -13.04323 -12.99222 -12.81993 -12.57970 -12.53536 -12.43468 -12.10826 -11.85954 -11.75488 -11.58343 -11.54673 -11.44334 -11.32028 -11.04264 -10.87510 -10.80321 -10.68188 -10.10916 -10.01102 -9.79508 -9.74643 -9.72731 -9.49852 -9.40692 -8.88475 -8.82720 -8.43957 -6.95471 -5.75934 -3.05209 1.41574 2.04784 2.07352 3.44903 3.50382 3.51690 3.52906 3.61139 3.96008 4.24844 4.39741 4.51173 4.55147 4.61718 4.73904 4.82700 4.92272 4.95510 5.01003 5.04255 5.10524 5.12523 5.23626 5.24019 5.33667 5.38240 5.39341 5.51667 5.55882 5.58167 5.72282 5.74291 5.79543 5.85736 5.97482 6.00902 6.06242 6.11753 6.16596 6.21939 6.31788 6.50798 6.58613 6.61962 6.75130 6.78934 6.85725 6.94439 7.16976 7.32226 7.73204 7.85885 8.42367 8.55908 9.53533 10.10369 10.44903 11.46219 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019983 B = 0.002076 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.867767 B =13481.458999 C =14110.874713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.133 3.867 5 N -0.359 5.359 6 C 0.124 3.876 7 C -0.287 4.287 8 C 0.589 3.411 9 O -0.549 6.549 10 N -0.711 5.711 11 C 0.143 3.857 12 H 0.113 0.887 13 C -0.182 4.182 14 C 0.196 3.804 15 H 0.066 0.934 16 N -0.701 5.701 17 C -0.241 4.241 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.115 4.115 29 C 0.079 3.921 30 N -0.296 5.296 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.186 0.814 41 H 0.393 0.607 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.387 0.613 45 H 0.255 0.745 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.058 0.942 50 H 0.067 0.933 51 H 0.074 0.926 52 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.655 -3.988 -15.094 28.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.206 4.206 4 C 0.012 3.988 5 N -0.138 5.138 6 C -0.027 4.027 7 C -0.302 4.302 8 C 0.376 3.624 9 O -0.427 6.427 10 N -0.360 5.360 11 C 0.039 3.961 12 H 0.130 0.870 13 C -0.224 4.224 14 C 0.083 3.917 15 H 0.084 0.916 16 N -0.339 5.339 17 C -0.372 4.372 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.124 4.124 26 C -0.164 4.164 27 C -0.171 4.171 28 C -0.153 4.153 29 C -0.109 4.109 30 N -0.116 5.116 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.203 0.797 41 H 0.228 0.772 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.222 0.778 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.093 0.907 52 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -24.517 -4.048 -15.051 29.052 hybrid contribution 1.177 0.072 0.872 1.467 sum -23.340 -3.976 -14.180 27.598 Atomic orbital electron populations 1.21792 0.93758 1.02261 1.02573 1.21425 0.96286 0.97004 0.98080 1.21843 1.01508 0.95135 1.02139 1.21988 0.73984 1.02475 1.00313 1.48509 1.06812 1.44244 1.14195 1.22981 0.89078 0.95884 0.94725 1.20378 0.93863 1.16743 0.99257 1.17277 0.82579 0.77927 0.84631 1.90794 1.87415 1.43340 1.21163 1.45827 1.05657 1.61561 1.22997 1.22366 0.79865 0.99506 0.94381 0.86957 1.24283 1.00213 0.96435 1.01478 1.20641 0.90735 0.92050 0.88279 0.91606 1.42108 1.35789 1.12961 1.43060 1.19289 1.06087 0.97259 1.14610 0.90953 1.24760 0.99873 0.96036 1.00092 1.69679 1.43161 1.06196 1.38632 0.86113 0.82270 0.77763 0.79995 1.20530 1.21906 1.21883 1.23546 0.96716 0.98056 0.94084 1.22638 1.00847 0.95897 0.96991 1.22739 0.98910 0.97650 0.97783 1.22528 0.98881 0.99059 0.94855 1.24039 0.94550 0.97243 0.95068 1.77103 1.04283 1.20084 1.10100 0.92274 0.91811 0.92230 0.89451 0.92164 0.92495 0.92562 0.89324 0.88276 0.79705 0.77211 0.90954 0.91304 0.77842 0.93485 0.91041 0.89949 0.90074 0.92300 0.91387 0.90715 0.79595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.19 37.16 0.34 -0.22 16 2 C -0.11 -0.61 3.00 -90.62 -0.27 -0.89 16 3 C -0.15 -0.96 9.08 37.16 0.34 -0.62 16 4 C 0.13 0.78 5.88 -4.04 -0.02 0.75 16 5 N -0.36 -3.30 3.10 -60.81 -0.19 -3.49 16 6 C 0.12 1.31 11.25 -16.56 -0.19 1.12 16 7 C -0.29 -3.52 6.13 -105.07 -0.64 -4.16 16 8 C 0.59 9.10 7.81 -12.52 -0.10 9.00 16 9 O -0.55 -10.81 16.54 5.28 0.09 -10.72 16 10 N -0.71 -9.89 5.29 -54.44 -0.29 -10.18 16 11 C 0.14 2.43 4.01 -67.48 -0.27 2.16 16 12 H 0.11 2.32 7.54 -51.93 -0.39 1.93 16 13 C -0.18 -3.29 7.68 -25.75 -0.20 -3.49 16 14 C 0.20 3.83 4.35 -67.48 -0.29 3.54 16 15 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 16 N -0.70 -17.29 4.91 -52.99 -0.26 -17.55 16 17 C -0.24 -6.63 9.98 -15.06 -0.15 -6.78 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 21 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 C -0.12 -1.93 0.91 -154.71 -0.14 -2.07 16 26 C -0.13 -2.03 7.60 -26.28 -0.20 -2.23 16 27 C -0.13 -1.80 8.08 -25.75 -0.21 -2.01 16 28 C -0.12 -1.43 7.16 -26.28 -0.19 -1.61 16 29 C 0.08 0.81 11.50 -16.98 -0.20 0.61 16 30 N -0.30 -3.17 12.24 30.86 0.38 -2.79 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.63 8.04 -51.93 -0.42 0.22 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.49 7.75 -51.93 -0.40 0.08 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.38 8.06 -51.93 -0.42 -0.03 16 40 H 0.19 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.39 4.27 5.87 -40.82 -0.24 4.03 16 42 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.39 10.26 7.48 -40.82 -0.31 9.96 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.08 1.58 7.51 -51.93 -0.39 1.19 16 48 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.07 0.77 6.96 -51.93 -0.36 0.41 16 52 H 0.19 1.35 7.50 -52.49 -0.39 0.96 16 LS Contribution 421.86 15.07 6.36 6.36 Total: -1.00 -33.66 421.86 -9.48 -43.15 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -8.78 Total: 12.45 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -2.48 Total: -7.29 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.37 Total: -61.32 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.66 -9.48 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078763406.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.980 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds