Wall clock time and date at job start Wed Apr 1 2020 05:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47209 * 2 1 4 4 C 1.52996 * 109.46825 * 120.00498 * 2 1 3 5 5 N 1.46502 * 109.46927 * 174.99731 * 4 2 1 6 6 C 1.34262 * 125.75659 * 124.99607 * 5 4 2 7 7 C 1.38038 * 107.42199 * 180.02562 * 6 5 4 8 8 C 1.47429 * 126.41558 * 179.97438 * 7 6 5 9 9 O 1.21597 * 120.00201 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99851 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00126 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.88137 * 26.84260 * 11 10 8 13 13 C 1.53950 * 113.66458 * 255.49467 * 11 10 8 14 14 C 1.53950 * 87.29592 * 220.70114 * 13 11 10 15 15 H 1.09006 * 113.65941 * 270.17111 * 14 13 11 16 16 N 1.46499 * 113.66414 * 139.20642 * 14 13 11 17 17 C 1.36939 * 119.99933 * 104.77943 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.52914 * 86.78449 * 24.73365 * 14 13 11 26 26 C 1.52907 * 121.14350 * 209.38294 * 25 14 13 27 27 C 1.53946 * 86.78434 * 209.37620 * 26 25 14 28 28 C 1.52906 * 121.13637 * 100.81404 * 25 14 13 29 29 C 1.41293 * 107.16807 * 0.22419 * 7 6 5 30 30 N 1.30450 * 108.02064 * 359.62007 * 29 7 6 31 31 H 1.09002 * 109.46644 * 299.99548 * 1 2 3 32 32 H 1.08993 * 109.46821 * 59.99981 * 1 2 3 33 33 H 1.09005 * 109.46780 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46870 * 239.99969 * 2 1 3 35 35 H 1.09003 * 109.46852 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47099 * 300.00443 * 3 2 1 37 37 H 1.09004 * 109.47230 * 60.00189 * 3 2 1 38 38 H 1.09002 * 109.47998 * 54.99869 * 4 2 1 39 39 H 1.08999 * 109.47164 * 294.99606 * 4 2 1 40 40 H 1.08006 * 126.28545 * 0.04491 * 6 5 4 41 41 H 0.97008 * 120.00277 * 359.97438 * 10 8 7 42 42 H 1.08998 * 113.57862 * 106.09816 * 13 11 10 43 43 H 1.08999 * 113.64870 * 335.31109 * 13 11 10 44 44 H 0.97001 * 119.99790 * 284.49917 * 16 14 13 45 45 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 46 46 H 1.09001 * 113.66043 * 323.84687 * 26 25 14 47 47 H 1.09000 * 113.66310 * 94.90448 * 26 25 14 48 48 H 1.09000 * 113.58131 * 270.13296 * 27 26 25 49 49 H 1.08999 * 113.65580 * 139.34498 * 27 26 25 50 50 H 1.08996 * 113.66552 * 265.09839 * 28 25 14 51 51 H 1.09001 * 113.66060 * 36.16135 * 28 25 14 52 52 H 1.07996 * 125.98698 * 179.74175 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.3561 -0.3966 2.1312 7 6 5.6324 -0.6839 1.6910 8 6 6.8902 -0.3899 2.4016 9 8 6.8618 0.1591 3.4862 10 7 8.0716 -0.7297 1.8491 11 6 9.3216 -0.4370 2.5550 12 1 9.1969 -0.3925 3.6369 13 6 10.0947 0.7600 1.9722 14 6 11.3806 -0.0580 2.1899 15 1 11.8355 0.0943 3.1687 16 7 12.3425 0.0550 1.0907 17 6 13.4663 0.8229 1.2406 18 1 13.6413 1.3488 2.1676 19 6 14.3807 0.9253 0.2012 20 7 14.1671 0.2847 -0.9286 21 14 15.9133 1.9734 0.4054 22 1 16.7182 1.4573 1.5416 23 1 16.7208 1.9174 -0.8395 24 1 15.5191 3.3794 0.6764 25 6 10.4988 -1.3046 2.1081 26 6 10.8674 -2.5847 2.8588 27 6 10.1411 -3.3487 1.7368 28 6 10.4254 -2.1385 0.8285 29 6 5.5079 -1.3074 0.4292 30 7 4.2377 -1.3916 0.1442 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8899 37 1 1.6768 1.9563 0.8900 38 1 1.6054 -1.7199 1.2951 39 1 1.7517 -0.1585 2.1369 40 1 4.0940 0.0854 3.0616 41 1 8.0943 -1.1680 0.9840 42 1 10.0389 1.6570 2.5889 43 1 9.8738 0.9539 0.9226 44 1 12.1853 -0.4174 0.2583 45 1 14.8059 0.3566 -1.6550 46 1 11.9397 -2.7768 2.8956 47 1 10.3857 -2.6750 3.8324 48 1 9.0806 -3.5071 1.9329 49 1 10.6538 -4.2584 1.4243 50 1 9.5905 -1.8725 0.1802 51 1 11.3735 -2.2053 0.2949 52 1 6.3216 -1.6552 -0.1898 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078763408.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:52 Heat of formation + Delta-G solvation = 85.547713 kcal Electronic energy + Delta-G solvation = -30411.384327 eV Core-core repulsion = 26413.965836 eV Total energy + Delta-G solvation = -3997.418491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.61820 -40.47780 -38.48412 -36.86121 -34.85046 -34.02769 -32.73696 -32.11946 -30.49235 -29.67757 -27.68517 -26.99963 -25.48351 -24.72763 -24.09286 -23.15774 -22.06094 -21.30241 -20.57062 -20.32999 -19.76703 -18.41245 -17.53137 -17.08484 -16.28967 -16.03093 -15.95832 -15.19944 -15.09529 -14.93009 -14.60262 -14.53012 -14.40217 -13.83494 -13.77950 -13.37347 -13.09131 -12.93983 -12.84436 -12.76409 -12.50767 -12.38287 -12.06029 -11.82197 -11.72319 -11.54031 -11.46205 -11.45572 -11.26236 -11.07487 -10.94000 -10.75491 -10.68428 -10.20403 -10.06519 -9.92817 -9.80025 -9.76885 -9.57351 -9.37339 -8.92178 -8.78769 -8.52730 -6.92654 -5.77037 -3.04809 1.38857 2.03656 2.06728 3.44239 3.45273 3.49863 3.50914 3.54770 3.95240 4.24971 4.39658 4.50747 4.59346 4.61226 4.73500 4.79587 4.92310 4.95500 5.01447 5.05893 5.08213 5.13228 5.19638 5.23088 5.31279 5.34506 5.39463 5.50185 5.54677 5.57928 5.68903 5.75605 5.80511 5.90410 5.96533 6.05254 6.06574 6.16555 6.20956 6.22146 6.32143 6.37305 6.44373 6.57320 6.67438 6.67942 6.82516 6.98523 7.14307 7.32122 7.72064 7.79828 8.42214 8.46793 9.53616 10.11467 10.46458 11.45379 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016851 B = 0.002112 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.268441 B =13251.480320 C =13822.757581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.134 3.866 5 N -0.359 5.359 6 C 0.124 3.876 7 C -0.289 4.289 8 C 0.593 3.407 9 O -0.557 6.557 10 N -0.708 5.708 11 C 0.148 3.852 12 H 0.110 0.890 13 C -0.174 4.174 14 C 0.180 3.820 15 H 0.078 0.922 16 N -0.707 5.707 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.140 4.140 28 C -0.108 4.108 29 C 0.081 3.919 30 N -0.294 5.294 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.185 0.815 41 H 0.397 0.603 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.386 0.614 45 H 0.255 0.745 46 H 0.085 0.915 47 H 0.060 0.940 48 H 0.072 0.928 49 H 0.062 0.938 50 H 0.057 0.943 51 H 0.097 0.903 52 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.792 -5.222 3.787 27.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.206 4.206 4 C 0.013 3.987 5 N -0.137 5.137 6 C -0.027 4.027 7 C -0.304 4.304 8 C 0.380 3.620 9 O -0.436 6.436 10 N -0.357 5.357 11 C 0.043 3.957 12 H 0.127 0.873 13 C -0.216 4.216 14 C 0.068 3.932 15 H 0.096 0.904 16 N -0.345 5.345 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.124 4.124 26 C -0.160 4.160 27 C -0.178 4.178 28 C -0.146 4.146 29 C -0.107 4.107 30 N -0.114 5.114 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.202 0.798 41 H 0.233 0.767 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.221 0.779 45 H 0.065 0.935 46 H 0.104 0.896 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.075 0.925 51 H 0.116 0.884 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -27.645 -5.109 3.725 28.359 hybrid contribution 1.392 0.556 -0.111 1.502 sum -26.254 -4.553 3.614 26.890 Atomic orbital electron populations 1.21792 0.93757 1.02248 1.02566 1.21431 0.96284 0.97028 0.98100 1.21844 1.01550 0.95110 1.02133 1.21985 0.73973 1.02457 1.00309 1.48530 1.06833 1.44221 1.14154 1.22949 0.89065 0.95915 0.94756 1.20338 0.93767 1.16953 0.99348 1.17241 0.82537 0.77749 0.84448 1.90746 1.87584 1.43771 1.21509 1.45787 1.05378 1.61370 1.23192 1.22122 0.79980 0.96378 0.97189 0.87257 1.24284 0.99203 0.97077 1.01070 1.21158 0.87721 0.91111 0.93251 0.90372 1.42307 1.22050 1.56793 1.13374 1.19262 0.97598 1.21224 0.99112 0.91132 1.24739 0.99125 1.00775 0.96275 1.69644 1.37408 1.46573 1.04541 0.86269 0.83086 0.80187 0.76650 1.21278 1.21773 1.21286 1.23430 0.96712 0.94563 0.97742 1.22679 1.00780 0.95565 0.96946 1.22839 0.99964 0.97284 0.97669 1.22451 1.02263 0.94692 0.95176 1.24084 0.94589 0.97058 0.95001 1.77134 1.04301 1.20054 1.09901 0.92304 0.91790 0.92235 0.89394 0.92529 0.92122 0.92539 0.89322 0.88322 0.79763 0.76706 0.92213 0.90196 0.77876 0.93479 0.89613 0.92092 0.90963 0.91922 0.92488 0.88423 0.79491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.19 37.16 0.34 -0.23 16 2 C -0.11 -0.63 3.00 -90.62 -0.27 -0.90 16 3 C -0.15 -0.99 9.08 37.16 0.34 -0.65 16 4 C 0.13 0.76 5.88 -4.04 -0.02 0.74 16 5 N -0.36 -3.25 3.10 -60.81 -0.19 -3.44 16 6 C 0.12 1.25 11.25 -16.56 -0.19 1.06 16 7 C -0.29 -3.45 6.13 -105.07 -0.64 -4.09 16 8 C 0.59 8.60 7.81 -12.52 -0.10 8.51 16 9 O -0.56 -9.88 16.54 5.28 0.09 -9.79 16 10 N -0.71 -9.60 5.30 -54.44 -0.29 -9.88 16 11 C 0.15 2.29 4.08 -67.48 -0.28 2.02 16 12 H 0.11 1.78 7.54 -51.93 -0.39 1.39 16 13 C -0.17 -3.13 7.68 -25.75 -0.20 -3.33 16 14 C 0.18 3.52 4.35 -67.48 -0.29 3.22 16 15 H 0.08 1.55 8.12 -51.93 -0.42 1.12 16 16 N -0.71 -17.09 5.34 -52.99 -0.28 -17.38 16 17 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 21 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 C -0.12 -1.92 1.06 -154.71 -0.16 -2.09 16 26 C -0.12 -1.77 7.84 -26.29 -0.21 -1.97 16 27 C -0.14 -1.82 8.08 -25.75 -0.21 -2.02 16 28 C -0.11 -1.61 6.77 -26.28 -0.18 -1.79 16 29 C 0.08 0.86 11.50 -16.98 -0.20 0.66 16 30 N -0.29 -3.23 12.24 30.86 0.38 -2.85 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.66 8.04 -51.93 -0.42 0.25 16 35 H 0.06 0.51 7.75 -51.93 -0.40 0.10 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.35 8.06 -51.93 -0.42 -0.07 16 40 H 0.19 1.48 8.06 -52.48 -0.42 1.06 16 41 H 0.40 4.66 5.63 -40.82 -0.23 4.43 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 44 H 0.39 9.77 6.12 -40.82 -0.25 9.52 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 51 H 0.10 1.72 6.96 -51.93 -0.36 1.36 16 52 H 0.19 1.54 7.50 -52.49 -0.39 1.15 16 LS Contribution 419.69 15.07 6.32 6.32 Total: -1.00 -32.88 419.69 -9.44 -42.32 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -8.66 Total: 12.41 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -2.51 Total: -8.05 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.34 Total: -60.47 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.88 -9.44 -42.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078763408.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.872 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds