Wall clock time and date at job start Wed Apr 1 2020 03:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47284 * 2 1 4 4 C 1.53002 * 109.47308 * 176.09077 * 3 2 1 5 5 C 1.53004 * 109.47089 * 294.86295 * 4 3 2 6 6 N 1.46506 * 109.47511 * 296.08845 * 3 2 1 7 7 N 1.28439 * 125.18757 * 305.43846 * 6 3 2 8 8 C 1.30869 * 110.92155 * 180.27401 * 7 6 3 9 9 C 1.39667 * 107.86295 * 359.71585 * 8 7 6 10 10 C 1.36598 * 125.19082 * 125.21535 * 6 3 2 11 11 C 1.47172 * 126.88342 * 0.02562 * 10 6 3 12 12 O 1.21632 * 119.99774 * 355.07923 * 11 10 6 13 13 N 1.34774 * 119.99797 * 174.80303 * 11 10 6 14 14 C 1.47284 * 136.54590 * 4.49944 * 13 11 10 15 15 C 1.54085 * 87.60656 * 151.36620 * 14 13 11 16 16 H 1.09001 * 115.04025 * 142.50106 * 15 14 13 17 17 C 1.53060 * 111.39443 * 273.97587 * 15 14 13 18 18 C 1.53145 * 109.21575 * 142.39718 * 17 15 14 19 19 N 1.46540 * 108.24997 * 301.59075 * 18 17 15 20 20 C 1.36935 * 119.73710 * 236.44119 * 19 18 17 21 21 H 1.08000 * 120.00008 * 33.13100 * 20 19 18 22 22 C 1.38816 * 120.00317 * 213.13145 * 20 19 18 23 23 N 1.31627 * 119.99420 * 6.33425 * 22 20 19 24 24 Si 1.86797 * 120.00552 * 186.33628 * 22 20 19 25 25 H 1.48503 * 109.46622 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47332 * 119.99298 * 24 22 20 27 27 H 1.48501 * 109.47195 * 240.00197 * 24 22 20 28 28 C 1.45698 * 120.52365 * 56.42108 * 19 18 17 29 29 C 1.46466 * 136.54078 * 184.13431 * 13 11 10 30 30 H 1.09000 * 111.44216 * 96.38268 * 29 13 11 31 31 H 1.08996 * 109.47139 * 185.02050 * 1 2 3 32 32 H 1.09001 * 109.47223 * 305.01786 * 1 2 3 33 33 H 1.09003 * 109.47106 * 65.01616 * 1 2 3 34 34 H 1.09007 * 109.47357 * 240.00212 * 2 1 3 35 35 H 1.08999 * 109.47570 * 120.00308 * 2 1 3 36 36 H 1.08999 * 109.47390 * 56.09092 * 3 2 1 37 37 H 1.08992 * 109.47487 * 54.86387 * 4 3 2 38 38 H 1.08996 * 109.47358 * 174.86671 * 4 3 2 39 39 H 1.08991 * 109.47330 * 185.43297 * 5 4 3 40 40 H 1.09005 * 109.46883 * 305.43400 * 5 4 3 41 41 H 1.09000 * 109.46751 * 65.42597 * 5 4 3 42 42 H 1.08002 * 126.06543 * 179.70797 * 8 7 6 43 43 H 1.07997 * 127.31879 * 180.02562 * 9 8 7 44 44 H 1.09000 * 113.53281 * 266.05484 * 14 13 11 45 45 H 1.09005 * 113.52733 * 36.68716 * 14 13 11 46 46 H 1.09001 * 109.51684 * 262.31966 * 17 15 14 47 47 H 1.09000 * 109.51464 * 22.47773 * 17 15 14 48 48 H 1.08999 * 109.70743 * 61.27672 * 18 17 15 49 49 H 1.08997 * 109.71112 * 181.89618 * 18 17 15 50 50 H 0.97006 * 119.99464 * 180.02562 * 23 22 20 51 51 H 1.09000 * 108.79065 * 80.89608 * 28 19 18 52 52 H 1.09002 * 108.78583 * 199.10868 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5669 1.4436 0.0983 5 6 3.9912 0.8673 1.4507 6 7 1.6302 2.1054 -1.2405 7 7 1.8719 1.6731 -2.4255 8 6 1.3842 2.4858 -3.3280 9 6 0.7617 3.5431 -2.6608 10 6 0.9290 3.2755 -1.3132 11 6 0.4529 4.0915 -0.1848 12 8 0.5973 3.6951 0.9560 13 7 -0.1382 5.2806 -0.4153 14 6 -0.5563 6.0558 -1.5958 15 6 -1.6568 6.6797 -0.7161 16 1 -1.8562 7.7344 -0.9055 17 6 -2.9139 5.8068 -0.6917 18 6 -3.5234 5.8400 0.7129 19 7 -2.5160 5.3580 1.6617 20 6 -2.8029 4.2943 2.4749 21 1 -3.4487 3.5037 2.1223 22 6 -2.2636 4.2320 3.7525 23 7 -1.5798 5.2510 4.2285 24 14 -2.5084 2.7022 4.7962 25 1 -3.3078 1.7076 4.0366 26 1 -1.1861 2.1188 5.1371 27 1 -3.2266 3.0643 6.0446 28 6 -1.2115 6.0014 1.7464 29 6 -0.6607 6.3830 0.3952 30 1 0.0720 7.1832 0.4993 31 1 -0.3633 -1.0237 0.0899 32 1 -0.3634 0.5897 0.8416 33 1 -0.3633 0.4341 -0.9315 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.6206 1.9762 0.8529 37 1 3.9831 0.8335 -0.7032 38 1 3.9361 2.4650 0.0067 39 1 5.0719 0.9567 1.5607 40 1 3.4977 1.4183 2.2514 41 1 3.7062 -0.1834 1.5034 42 1 1.4514 2.3610 -4.3987 43 1 0.2567 4.3894 -3.1025 44 1 0.1914 6.7740 -1.9321 45 1 -0.9447 5.4388 -2.4062 46 1 -3.6372 6.1899 -1.4115 47 1 -2.6502 4.7813 -0.9500 48 1 -3.8079 6.8613 0.9661 49 1 -4.4006 5.1941 0.7483 50 1 -1.2026 5.2073 5.1212 51 1 -1.3021 6.8997 2.3571 52 1 -0.5142 5.3185 2.2318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084404506.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:58 Heat of formation + Delta-G solvation = 106.094583 kcal Electronic energy + Delta-G solvation = -33256.959839 eV Core-core repulsion = 29260.432328 eV Total energy + Delta-G solvation = -3996.527512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.43530 -40.49302 -37.59649 -36.80230 -35.21024 -32.21611 -31.87016 -31.21393 -30.98443 -30.18611 -28.63054 -27.01153 -26.27003 -23.94311 -23.46270 -22.86305 -22.40105 -22.00484 -20.94910 -20.35176 -19.14848 -18.06206 -17.35490 -16.39037 -16.04098 -15.71492 -15.60246 -15.22425 -14.87047 -14.40484 -14.23561 -14.01769 -13.87940 -13.71295 -13.54284 -13.28375 -13.08853 -13.01924 -12.66631 -12.41134 -12.31243 -12.14275 -11.96728 -11.89965 -11.49801 -11.45549 -11.11055 -11.04938 -10.91739 -10.74180 -10.69855 -10.66337 -10.47853 -10.43419 -10.17754 -9.91485 -9.81814 -9.59806 -9.02282 -8.99526 -8.84725 -8.34767 -8.17803 -6.48145 -5.66951 -3.17127 1.56439 2.48769 2.77454 3.29185 3.43570 3.50348 3.51909 3.65524 4.44634 4.55997 4.57996 4.64828 4.76799 4.89500 5.10042 5.15735 5.19635 5.24481 5.29547 5.38558 5.41675 5.47799 5.48697 5.56653 5.62795 5.67167 5.70486 5.71287 5.80859 5.84689 5.88735 5.90612 6.00105 6.07028 6.10199 6.13425 6.13743 6.23853 6.29789 6.40100 6.41445 6.50309 6.59581 6.66381 6.81023 6.95049 7.02056 7.47626 7.77213 7.92589 8.18269 8.25888 8.60880 8.62249 9.36650 9.97741 10.49576 11.40854 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009162 B = 0.005335 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.360340 B = 5246.923443 C = 7137.507653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C 0.130 3.870 4 C -0.127 4.127 5 C -0.151 4.151 6 N -0.245 5.245 7 N -0.281 5.281 8 C -0.013 4.013 9 C -0.203 4.203 10 C -0.018 4.018 11 C 0.613 3.387 12 O -0.514 6.514 13 N -0.617 5.617 14 C 0.091 3.909 15 C -0.112 4.112 16 H 0.095 0.905 17 C -0.117 4.117 18 C 0.148 3.852 19 N -0.583 5.583 20 C -0.249 4.249 21 H 0.058 0.942 22 C 0.016 3.984 23 N -0.904 5.904 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.168 3.832 29 C 0.124 3.876 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.141 0.859 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.180 0.820 43 H 0.157 0.843 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.020 0.980 49 H 0.055 0.945 50 H 0.251 0.749 51 H 0.033 0.967 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 -1.812 -14.312 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.030 3.970 4 C -0.165 4.165 5 C -0.209 4.209 6 N -0.032 5.032 7 N -0.114 5.114 8 C -0.188 4.188 9 C -0.232 4.232 10 C -0.147 4.147 11 C 0.401 3.599 12 O -0.389 6.389 13 N -0.352 5.352 14 C -0.032 4.032 15 C -0.131 4.131 16 H 0.113 0.887 17 C -0.156 4.156 18 C 0.022 3.978 19 N -0.306 5.306 20 C -0.379 4.379 21 H 0.075 0.925 22 C -0.183 4.183 23 N -0.548 5.548 24 Si 0.729 3.271 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.042 3.958 29 C 0.020 3.980 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.158 0.842 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.197 0.803 43 H 0.175 0.825 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.038 0.962 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.051 0.949 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.818 -3.310 -13.190 15.686 hybrid contribution -0.377 0.044 0.177 0.419 sum 7.441 -3.267 -13.014 15.342 Atomic orbital electron populations 1.21763 0.94847 1.01859 1.02656 1.21873 0.97100 0.94234 1.03307 1.22353 0.96151 0.95159 0.83292 1.21806 0.93316 1.02219 0.99155 1.21783 1.01453 1.01242 0.96373 1.45888 1.36746 1.15041 1.05565 1.73069 1.22411 1.25712 0.90161 1.23463 1.02401 0.93693 0.99291 1.22376 1.06914 1.02698 0.91218 1.21573 1.04899 0.92471 0.95751 1.16204 0.77557 0.79668 0.86504 1.90807 1.56139 1.69701 1.22286 1.49004 1.58790 1.16079 1.11353 1.23519 0.95711 0.93284 0.90683 1.22696 0.94681 0.99672 0.96044 0.88725 1.21858 0.95020 0.98751 0.99970 1.20745 0.92098 0.97020 0.87969 1.43386 1.08621 1.36154 1.42398 1.19051 1.28591 0.97664 0.92614 0.92450 1.25132 0.99953 0.96849 0.96392 1.69969 1.38740 1.29308 1.16783 0.86273 0.77448 0.83044 0.80317 1.20412 1.21581 1.21751 1.20167 0.88378 0.98483 0.88800 1.22595 0.93041 0.85741 0.96608 0.90791 0.92446 0.91573 0.93165 0.90767 0.89775 0.84180 0.90947 0.91589 0.92114 0.91729 0.92125 0.80280 0.82514 0.90159 0.90535 0.92617 0.92138 0.96236 0.92617 0.93857 0.94900 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.73 37.16 0.36 -1.99 16 2 C -0.13 -1.73 5.28 -26.73 -0.14 -1.87 16 3 C 0.13 2.00 2.42 -67.93 -0.16 1.83 16 4 C -0.13 -1.64 5.66 -26.73 -0.15 -1.79 16 5 C -0.15 -1.68 9.54 37.16 0.35 -1.33 16 6 N -0.24 -3.96 2.59 -50.69 -0.13 -4.09 16 7 N -0.28 -4.25 11.45 30.59 0.35 -3.90 16 8 C -0.01 -0.17 12.03 -17.43 -0.21 -0.38 16 9 C -0.20 -2.83 10.18 -38.99 -0.40 -3.23 16 10 C -0.02 -0.31 6.96 -82.06 -0.57 -0.88 16 11 C 0.61 12.18 8.00 -12.63 -0.10 12.08 16 12 O -0.51 -12.17 13.57 5.25 0.07 -12.10 16 13 N -0.62 -10.93 3.34 -189.44 -0.63 -11.57 16 14 C 0.09 1.17 6.52 -11.55 -0.08 1.09 16 15 C -0.11 -1.62 4.57 -90.45 -0.41 -2.04 16 16 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.12 -1.89 5.69 -26.63 -0.15 -2.04 16 18 C 0.15 3.02 6.46 -3.95 -0.03 3.00 16 19 N -0.58 -14.60 3.00 -175.06 -0.53 -15.13 16 20 C -0.25 -7.03 9.44 -15.06 -0.14 -7.17 16 21 H 0.06 1.63 7.84 -52.49 -0.41 1.22 16 22 C 0.02 0.45 5.10 -17.43 -0.09 0.36 16 23 N -0.90 -26.89 11.02 55.49 0.61 -26.28 16 24 Si 0.90 22.83 29.56 -169.99 -5.02 17.80 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 C 0.17 4.05 4.54 -5.56 -0.03 4.02 16 29 C 0.12 2.27 3.99 -77.97 -0.31 1.96 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.83 7.86 -51.93 -0.41 0.42 16 34 H 0.07 0.97 7.99 -51.92 -0.42 0.55 16 35 H 0.08 0.99 6.51 -51.93 -0.34 0.66 16 36 H 0.14 2.58 5.32 -51.93 -0.28 2.30 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.60 6.75 -51.93 -0.35 0.25 16 42 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.16 1.79 5.38 -52.49 -0.28 1.50 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 0.88 6.16 -51.93 -0.32 0.56 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 1.14 7.90 -51.93 -0.41 0.73 16 50 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 51 H 0.03 0.86 7.91 -51.93 -0.41 0.45 16 52 H 0.10 2.77 5.29 -51.93 -0.27 2.50 16 LS Contribution 400.48 15.07 6.04 6.04 Total: -1.00 -33.27 400.48 -10.00 -43.27 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.50 Total: 4.31 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.25 Total: 1.64 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.33 Total: -60.96 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.07 Total: -12.10 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.27 -10.00 -43.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084404506.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.370 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds