Wall clock time and date at job start Wed Apr 1 2020 04:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47652 * 2 1 4 4 C 1.52997 * 109.46959 * 174.98774 * 3 2 1 5 5 C 1.52996 * 109.47337 * 293.96215 * 4 3 2 6 6 N 1.46501 * 109.46861 * 294.99122 * 3 2 1 7 7 C 1.35032 * 124.87923 * 274.99833 * 6 3 2 8 8 C 1.35370 * 107.22306 * 179.97438 * 7 6 3 9 9 C 1.41500 * 105.50770 * 359.97438 * 8 7 6 10 10 C 1.47705 * 126.52302 * 180.02562 * 9 8 7 11 11 O 1.21576 * 119.99498 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00382 * 179.97438 * 10 9 8 13 13 C 1.47291 * 136.54085 * 359.62450 * 12 10 9 14 14 C 1.54358 * 87.50378 * 151.47490 * 13 12 10 15 15 H 1.08992 * 115.79040 * 141.80014 * 14 13 12 16 16 C 1.53064 * 111.57376 * 274.17446 * 14 13 12 17 17 C 1.53147 * 109.21374 * 142.38042 * 16 14 13 18 18 N 1.46536 * 108.25037 * 301.58364 * 17 16 14 19 19 C 1.36932 * 119.74200 * 236.40020 * 18 17 16 20 20 H 1.08006 * 120.00400 * 151.06362 * 19 18 17 21 21 C 1.38818 * 120.00156 * 331.06247 * 19 18 17 22 22 N 1.31614 * 120.00351 * 160.80573 * 21 19 18 23 23 Si 1.86797 * 119.99547 * 340.80642 * 21 19 18 24 24 H 1.48505 * 109.46902 * 94.77598 * 23 21 19 25 25 H 1.48501 * 109.46955 * 214.77083 * 23 21 19 26 26 H 1.48494 * 109.47482 * 334.77662 * 23 21 19 27 27 C 1.45701 * 120.51987 * 56.42543 * 18 17 16 28 28 C 1.46461 * 136.54696 * 179.97438 * 12 10 9 29 29 H 1.08998 * 111.44199 * 97.06157 * 28 12 10 30 30 N 1.28469 * 124.88654 * 94.97491 * 6 3 2 31 31 H 1.09010 * 109.46680 * 65.49389 * 1 2 3 32 32 H 1.08991 * 109.47624 * 185.49275 * 1 2 3 33 33 H 1.09002 * 109.47054 * 305.49915 * 1 2 3 34 34 H 1.09002 * 109.47137 * 239.99496 * 2 1 3 35 35 H 1.09009 * 109.46521 * 120.00065 * 2 1 3 36 36 H 1.08998 * 109.46625 * 54.98715 * 3 2 1 37 37 H 1.09004 * 109.47190 * 53.96620 * 4 3 2 38 38 H 1.09005 * 109.46951 * 173.96067 * 4 3 2 39 39 H 1.09000 * 109.47548 * 60.90499 * 5 4 3 40 40 H 1.08999 * 109.46948 * 180.90759 * 5 4 3 41 41 H 1.09005 * 109.47118 * 300.90315 * 5 4 3 42 42 H 1.07994 * 126.39016 * 359.95741 * 7 6 3 43 43 H 1.08003 * 127.24377 * 179.97438 * 8 7 6 44 44 H 1.08994 * 113.53151 * 266.10296 * 13 12 10 45 45 H 1.08996 * 113.52823 * 36.74095 * 13 12 10 46 46 H 1.08996 * 109.51783 * 22.44881 * 16 14 13 47 47 H 1.09004 * 109.55747 * 262.32055 * 16 14 13 48 48 H 1.09003 * 109.70454 * 181.90047 * 17 16 14 49 49 H 1.08997 * 109.74852 * 61.29743 * 17 16 14 50 50 H 0.96995 * 120.00621 * 179.97438 * 22 21 19 51 51 H 1.09003 * 108.78614 * 199.11033 * 27 18 17 52 52 H 1.09000 * 108.79342 * 80.89488 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5649 1.4441 0.1260 5 6 3.9639 0.8975 1.4982 6 7 1.6528 2.0973 -1.2519 7 6 2.3484 2.0278 -2.4072 8 6 1.6736 2.7577 -3.3260 9 6 0.5385 3.2626 -2.6486 10 6 -0.5169 4.1225 -3.2217 11 8 -0.4570 4.4632 -4.3872 12 7 -1.5461 4.5295 -2.4527 13 6 -1.9769 4.3425 -1.0566 14 6 -2.6594 5.7237 -1.1532 15 1 -3.6201 5.8144 -0.6464 16 6 -1.6821 6.8578 -0.8348 17 6 -1.9734 8.0472 -1.7545 18 7 -1.8404 7.5972 -3.1427 19 6 -0.9707 8.2381 -3.9842 20 1 -0.5097 7.6980 -4.7979 21 6 -0.6815 9.5820 -3.7913 22 7 0.4011 10.1056 -4.3261 23 14 -1.8290 10.6474 -2.7727 24 1 -1.3408 10.7011 -1.3712 25 1 -1.8623 12.0201 -3.3381 26 1 -3.1960 10.0679 -2.7987 27 6 -2.6266 6.4736 -3.6349 28 6 -2.7448 5.3524 -2.6291 29 1 -3.6242 4.7388 -2.8242 30 7 0.6023 2.8200 -1.4087 31 1 -0.3633 0.4263 -0.9352 32 1 -0.3634 -1.0228 0.0984 33 1 -0.3633 0.5968 0.8367 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8901 36 1 1.6053 1.9815 0.8417 37 1 3.9947 0.8160 -0.6543 38 1 3.9372 2.4629 0.0185 39 1 3.6054 -0.1269 1.5995 40 1 5.0495 0.9137 1.5941 41 1 3.5209 1.5163 2.2786 42 1 3.2712 1.4904 -2.5680 43 1 1.9445 2.9203 -4.3588 44 1 -2.6785 3.5189 -0.9243 45 1 -1.1505 4.3125 -0.3466 46 1 -0.6604 6.5143 -0.9963 47 1 -1.8035 7.1631 0.2045 48 1 -1.2600 8.8475 -1.5576 49 1 -2.9873 8.4077 -1.5806 50 1 0.6030 11.0448 -4.1917 51 1 -2.1572 6.0861 -4.5392 52 1 -3.6266 6.8277 -3.8853 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084701552.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:03 Heat of formation + Delta-G solvation = 113.619637 kcal Electronic energy + Delta-G solvation = -32120.332840 eV Core-core repulsion = 28124.131639 eV Total energy + Delta-G solvation = -3996.201201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.64903 -40.53071 -37.79084 -37.05813 -35.45807 -32.38226 -31.91935 -31.48719 -31.01150 -30.68161 -29.07853 -27.14492 -26.62432 -23.90540 -23.49395 -23.30654 -22.68420 -22.12972 -21.07741 -19.92991 -19.75494 -17.97229 -17.45018 -16.92708 -16.31910 -16.07975 -15.63826 -15.24999 -15.15419 -15.02339 -14.58050 -14.30388 -13.73134 -13.68258 -13.52538 -13.48256 -13.22442 -12.98851 -12.76122 -12.70179 -12.64118 -12.42170 -12.31252 -12.11745 -12.01874 -11.77692 -11.46529 -11.32876 -11.28411 -11.13496 -11.01378 -10.80080 -10.75014 -10.56973 -10.12884 -9.82327 -9.57903 -9.31842 -9.20755 -9.12745 -8.93050 -8.53856 -8.14613 -6.78371 -5.77533 -3.14209 1.81977 2.29928 2.36528 3.24415 3.40328 3.56705 3.60190 3.86329 3.93501 4.24511 4.47628 4.58793 4.62530 4.64273 4.65904 4.70607 4.84866 4.87972 5.06571 5.08304 5.09197 5.18845 5.20462 5.34227 5.39514 5.42794 5.53754 5.54739 5.56448 5.64825 5.65518 5.70163 5.71867 5.75402 5.86385 5.88628 5.91924 5.95551 6.09421 6.09931 6.30444 6.39453 6.46897 6.56406 6.70996 6.75575 6.84889 6.92547 7.06712 8.00368 8.18330 8.23791 8.54993 8.72410 9.15878 9.90206 10.23645 11.38869 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.003097 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.444161 B = 9037.438339 C = 9315.298627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.149 3.851 4 C -0.135 4.135 5 C -0.150 4.150 6 N -0.280 5.280 7 C -0.024 4.024 8 C -0.177 4.177 9 C -0.002 4.002 10 C 0.632 3.368 11 O -0.519 6.519 12 N -0.620 5.620 13 C 0.108 3.892 14 C -0.116 4.116 15 H 0.094 0.906 16 C -0.115 4.115 17 C 0.128 3.872 18 N -0.596 5.596 19 C -0.248 4.248 20 H 0.086 0.914 21 C 0.019 3.981 22 N -0.912 5.912 23 Si 0.884 3.116 24 H -0.291 1.291 25 H -0.306 1.306 26 H -0.269 1.269 27 C 0.144 3.856 28 C 0.128 3.872 29 H 0.080 0.920 30 N -0.256 5.256 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.175 0.825 43 H 0.160 0.840 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.027 0.973 50 H 0.260 0.740 51 H 0.079 0.921 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -23.406 14.603 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.048 3.952 4 C -0.174 4.174 5 C -0.208 4.208 6 N -0.068 5.068 7 C -0.166 4.166 8 C -0.205 4.205 9 C -0.163 4.163 10 C 0.419 3.581 11 O -0.392 6.392 12 N -0.356 5.356 13 C -0.015 4.015 14 C -0.135 4.135 15 H 0.112 0.888 16 C -0.154 4.154 17 C 0.002 3.998 18 N -0.319 5.319 19 C -0.377 4.377 20 H 0.104 0.896 21 C -0.179 4.179 22 N -0.556 5.556 23 Si 0.715 3.285 24 H -0.220 1.220 25 H -0.234 1.234 26 H -0.194 1.194 27 C 0.018 3.982 28 C 0.024 3.976 29 H 0.097 0.903 30 N -0.091 5.091 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.193 0.807 43 H 0.178 0.822 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.045 0.955 50 H 0.070 0.930 51 H 0.097 0.903 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.925 -23.185 14.872 27.612 hybrid contribution -0.004 0.555 -0.146 0.574 sum 1.921 -22.630 14.726 27.068 Atomic orbital electron populations 1.21757 0.94572 1.01753 1.02908 1.22020 0.97495 0.94339 1.03483 1.21697 0.96040 0.93813 0.83609 1.21906 0.92669 1.03287 0.99520 1.21778 1.02073 1.01331 0.95574 1.45639 1.16118 1.35173 1.09863 1.22659 1.01261 1.06320 0.86396 1.21780 0.95484 1.01937 1.01343 1.21979 0.99134 1.04296 0.90878 1.16205 0.79261 0.78401 0.84209 1.90823 1.76358 1.56231 1.15834 1.49108 1.22666 1.50485 1.13296 1.23271 0.97896 0.96500 0.83852 1.22853 0.99561 0.94927 0.96164 0.88773 1.21823 0.98797 0.96080 0.98724 1.21224 0.98643 0.94993 0.84946 1.43779 1.47482 1.34453 1.06230 1.19012 1.16582 0.91721 1.10360 0.89640 1.25286 0.97495 0.96562 0.98519 1.69840 1.24284 1.13348 1.48170 0.86925 0.83090 0.79694 0.78808 1.21960 1.23435 1.19438 1.20287 0.95064 0.87027 0.95838 1.22352 0.86335 0.92322 0.96608 0.90254 1.73549 1.06879 1.08942 1.19762 0.92284 0.92461 0.92194 0.91095 0.89485 0.87475 0.90619 0.90433 0.91962 0.91673 0.92083 0.80732 0.82239 0.90674 0.90041 0.91445 0.92433 0.90937 0.95518 0.93032 0.90271 0.95790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.66 37.16 0.36 -0.81 16 2 C -0.14 -0.83 5.49 -26.73 -0.15 -0.98 16 3 C 0.15 1.13 2.64 -67.93 -0.18 0.95 16 4 C -0.14 -0.78 4.86 -26.73 -0.13 -0.91 16 5 C -0.15 -0.62 9.67 37.16 0.36 -0.26 16 6 N -0.28 -3.20 2.83 -54.83 -0.16 -3.35 16 7 C -0.02 -0.27 10.55 -17.17 -0.18 -0.46 16 8 C -0.18 -2.68 10.81 -39.36 -0.43 -3.11 16 9 C 0.00 -0.04 7.11 -82.77 -0.59 -0.63 16 10 C 0.63 12.99 8.01 -12.39 -0.10 12.89 16 11 O -0.52 -12.63 16.17 5.30 0.09 -12.54 16 12 N -0.62 -11.28 3.33 -188.73 -0.63 -11.91 16 13 C 0.11 1.52 7.20 -11.40 -0.08 1.44 16 14 C -0.12 -1.77 4.57 -90.17 -0.41 -2.18 16 15 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 16 C -0.11 -2.10 5.71 -26.62 -0.15 -2.26 16 17 C 0.13 2.89 4.13 -3.95 -0.02 2.88 16 18 N -0.60 -15.21 2.77 -174.90 -0.49 -15.69 16 19 C -0.25 -7.51 9.96 -15.06 -0.15 -7.66 16 20 H 0.09 2.89 8.01 -52.48 -0.42 2.47 16 21 C 0.02 0.58 5.23 -17.43 -0.09 0.49 16 22 N -0.91 -29.62 13.97 55.49 0.78 -28.84 16 23 Si 0.88 23.32 24.34 -169.99 -4.14 19.18 16 24 H -0.29 -7.39 6.70 56.52 0.38 -7.01 16 25 H -0.31 -8.21 7.11 56.52 0.40 -7.81 16 26 H -0.27 -6.89 6.49 56.52 0.37 -6.52 16 27 C 0.14 3.18 6.15 -5.44 -0.03 3.15 16 28 C 0.13 2.25 4.02 -77.71 -0.31 1.93 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 N -0.26 -3.75 9.98 33.42 0.33 -3.42 16 31 H 0.06 0.61 7.47 -51.92 -0.39 0.23 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.36 6.40 -51.92 -0.33 0.03 16 36 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.36 7.38 -51.93 -0.38 -0.02 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.20 6.54 -51.93 -0.34 -0.14 16 40 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.18 1.32 7.33 -52.49 -0.38 0.93 16 43 H 0.16 2.36 8.06 -52.48 -0.42 1.93 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.08 1.16 7.40 -51.93 -0.38 0.77 16 46 H 0.07 1.40 7.69 -51.93 -0.40 1.00 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.07 1.82 4.33 -51.93 -0.22 1.59 16 49 H 0.03 0.58 7.09 -51.93 -0.37 0.21 16 50 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 51 H 0.08 1.96 6.46 -51.93 -0.34 1.62 16 52 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 399.62 15.07 6.02 6.02 Total: -1.00 -37.34 399.62 -9.12 -46.46 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -8.65 Total: -0.40 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.28 Total: 4.50 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.16 Total: -63.22 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.14 Total: 19.18 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.34 -9.12 -46.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084701552.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.082 kcal (2) G-P(sol) polarization free energy of solvation -37.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds