Wall clock time and date at job start Wed Apr 1 2020 04:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.54795 * 29.32827 * 4 3 2 6 6 C 1.53000 * 117.50165 * 243.62462 * 4 3 2 7 7 C 1.52994 * 59.99907 * 252.50793 * 6 4 3 8 8 H 1.09002 * 117.49788 * 107.49222 * 7 6 4 9 9 C 1.50701 * 117.51900 * 252.51694 * 7 6 4 10 10 O 1.21278 * 120.00254 * 68.62864 * 9 7 6 11 11 N 1.34782 * 119.99870 * 248.63484 * 9 7 6 12 12 C 1.48144 * 127.83537 * 180.02562 * 11 9 7 13 13 C 1.54393 * 104.61368 * 219.57949 * 12 11 9 14 14 H 1.09000 * 110.34346 * 95.10942 * 13 12 11 15 15 C 1.50705 * 110.34303 * 217.26211 * 13 12 11 16 16 C 1.39866 * 126.04037 * 58.23664 * 15 13 12 17 17 N 1.30839 * 108.20487 * 179.82032 * 16 15 13 18 18 N 1.40088 * 108.20151 * 0.44061 * 17 16 15 19 19 C 1.46499 * 126.03566 * 179.74282 * 18 17 16 20 20 C 1.34951 * 107.92640 * 359.71571 * 18 17 16 21 21 C 1.54282 * 104.96234 * 336.13350 * 13 12 11 22 22 H 1.09000 * 110.34018 * 241.02496 * 21 13 12 23 23 N 1.46500 * 110.34496 * 118.87056 * 21 13 12 24 24 C 1.36931 * 120.00075 * 154.99830 * 23 21 13 25 25 H 1.07999 * 120.00324 * 0.02562 * 24 23 21 26 26 C 1.38818 * 120.00186 * 179.97438 * 24 23 21 27 27 N 1.31619 * 119.99450 * 0.02562 * 26 24 23 28 28 Si 1.86799 * 120.00152 * 180.02562 * 26 24 23 29 29 H 1.48501 * 109.47217 * 359.97438 * 28 26 24 30 30 H 1.48499 * 109.47208 * 120.00303 * 28 26 24 31 31 H 1.48500 * 109.47007 * 240.00300 * 28 26 24 32 32 C 1.48149 * 127.83743 * 359.67442 * 11 9 7 33 33 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 35 35 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 36 36 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 37 37 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 38 38 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 39 39 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 40 40 H 1.09001 * 117.49810 * 359.97438 * 6 4 3 41 41 H 1.08995 * 117.50134 * 145.01745 * 6 4 3 42 42 H 1.08996 * 110.40720 * 338.36204 * 12 11 9 43 43 H 1.09004 * 110.41120 * 100.79748 * 12 11 9 44 44 H 1.08002 * 125.89726 * 359.97438 * 16 15 13 45 45 H 1.09000 * 109.46880 * 269.97327 * 19 18 17 46 46 H 1.09001 * 109.47097 * 29.97089 * 19 18 17 47 47 H 1.09003 * 109.46832 * 149.97529 * 19 18 17 48 48 H 1.07994 * 126.12841 * 180.02562 * 20 18 17 49 49 H 0.97001 * 119.99664 * 334.99736 * 23 21 13 50 50 H 0.97003 * 119.99810 * 179.97438 * 27 26 24 51 51 H 1.09000 * 110.40682 * 259.20267 * 32 11 9 52 52 H 1.08994 * 110.41032 * 21.63252 * 32 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 4.0398 0.5853 -0.4827 6 6 4.2769 2.0453 1.2150 7 6 4.2763 2.7945 -0.1190 8 1 3.6511 3.6840 -0.1963 9 6 5.5685 2.8390 -0.8931 10 8 6.0106 1.8268 -1.3939 11 7 6.2330 4.0038 -1.0289 12 6 7.5061 4.2454 -1.7469 13 6 8.2760 5.2394 -0.8509 14 1 8.9618 4.7046 -0.1938 15 6 9.0303 6.2321 -1.6975 16 6 8.4730 7.0960 -2.6459 17 7 9.4393 7.8051 -3.1707 18 7 10.6451 7.4071 -2.5790 19 6 11.9733 7.9451 -2.8835 20 6 10.3671 6.4410 -1.6787 21 6 7.1879 5.9565 -0.0249 22 1 7.2002 7.0269 -0.2303 23 7 7.3893 5.7108 1.4052 24 6 6.9108 6.6029 2.3272 25 1 6.3844 7.4874 2.0002 26 6 7.1012 6.3698 3.6824 27 7 7.7422 5.2916 4.0809 28 14 6.4477 7.5864 4.9402 29 1 5.7705 8.7071 4.2396 30 1 5.4784 6.9024 5.8334 31 1 7.5753 8.1174 5.7476 32 6 5.8522 5.3343 -0.5000 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5137 0.8900 35 1 -0.3634 0.5139 -0.8899 36 1 1.8933 -0.5138 -0.8900 37 1 1.8934 -0.5138 0.8899 38 1 1.6765 1.9564 -0.8899 39 1 1.6767 1.9563 0.8900 40 1 3.6520 2.4422 2.0150 41 1 5.2121 1.5845 1.5330 42 1 8.0657 3.3159 -1.8515 43 1 7.3132 4.6862 -2.7250 44 1 7.4256 7.1673 -2.8994 45 1 12.4249 7.3643 -3.6877 46 1 11.8812 8.9858 -3.1943 47 1 12.6018 7.8855 -1.9949 48 1 11.0831 5.9271 -1.0547 49 1 7.8617 4.9161 1.6989 50 1 7.8756 5.1288 5.0278 51 1 5.4052 5.9422 -1.2866 52 1 5.1624 5.2273 0.3371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086995815.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:43 Heat of formation + Delta-G solvation = 76.185009 kcal Electronic energy + Delta-G solvation = -30666.870101 eV Core-core repulsion = 26669.045613 eV Total energy + Delta-G solvation = -3997.824488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.14631 -39.76439 -37.96148 -36.56869 -33.88710 -33.83217 -33.37300 -31.76427 -30.66621 -28.87039 -27.53863 -27.33635 -26.33737 -24.63804 -23.48382 -22.23229 -21.82179 -21.10906 -20.55902 -20.38573 -19.35946 -18.56479 -17.38987 -16.79047 -16.41894 -15.61699 -15.40133 -15.30659 -15.16271 -14.66754 -14.44993 -14.24301 -13.97455 -13.57852 -13.42459 -13.27621 -13.04974 -12.98826 -12.75608 -12.66351 -12.51665 -12.23742 -12.12283 -11.85751 -11.74861 -11.51970 -11.32097 -11.01575 -10.98795 -10.87419 -10.87356 -10.77266 -10.68332 -10.22050 -10.08982 -10.04014 -9.83605 -9.75260 -9.41852 -9.28156 -9.06811 -8.35946 -8.11590 -6.98207 -5.81908 -3.11144 2.02454 2.61923 2.85505 2.97491 3.31014 3.39092 3.45657 3.47390 4.07502 4.50804 4.57553 4.61230 4.88032 4.94848 4.98147 5.04122 5.05718 5.13087 5.14965 5.16469 5.21351 5.29568 5.35008 5.42275 5.47869 5.52968 5.57246 5.67114 5.67518 5.75649 5.80785 5.83223 5.84038 5.90178 5.94502 6.02860 6.06614 6.13571 6.16393 6.20721 6.25119 6.30111 6.45491 6.47149 6.56259 6.58975 6.83188 6.93853 7.12172 7.66296 7.82187 7.99871 8.35664 8.57128 9.47639 10.03779 10.38402 11.40115 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007359 B = 0.003442 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3804.193475 B = 8132.058142 C =11212.616741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.125 4.125 5 H 0.114 0.886 6 C -0.137 4.137 7 C -0.179 4.179 8 H 0.119 0.881 9 C 0.567 3.433 10 O -0.559 6.559 11 N -0.609 5.609 12 C 0.117 3.883 13 C -0.033 4.033 14 H 0.088 0.912 15 C -0.209 4.209 16 C 0.056 3.944 17 N -0.304 5.304 18 N -0.382 5.382 19 C 0.105 3.895 20 C 0.060 3.940 21 C 0.178 3.822 22 H 0.070 0.930 23 N -0.712 5.712 24 C -0.242 4.242 25 H 0.072 0.928 26 C -0.008 4.008 27 N -0.928 5.928 28 Si 0.903 3.097 29 H -0.280 1.280 30 H -0.292 1.292 31 H -0.292 1.292 32 C 0.071 3.929 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.180 0.820 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.172 0.828 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.058 0.942 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -2.488 -12.209 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.126 4.126 4 C -0.144 4.144 5 H 0.132 0.868 6 C -0.174 4.174 7 C -0.200 4.200 8 H 0.137 0.863 9 C 0.357 3.643 10 O -0.438 6.438 11 N -0.341 5.341 12 C -0.006 4.006 13 C -0.055 4.055 14 H 0.106 0.894 15 C -0.221 4.221 16 C -0.130 4.130 17 N -0.125 5.125 18 N -0.165 5.165 19 C -0.037 4.037 20 C -0.086 4.086 21 C 0.066 3.934 22 H 0.087 0.913 23 N -0.352 5.352 24 C -0.373 4.373 25 H 0.090 0.910 26 C -0.205 4.205 27 N -0.576 5.576 28 Si 0.734 3.266 29 H -0.205 1.205 30 H -0.219 1.219 31 H -0.220 1.220 32 C -0.055 4.055 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.197 0.803 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.189 0.811 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.076 0.924 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.973 -1.978 -13.213 13.505 hybrid contribution -0.254 0.016 1.563 1.584 sum -2.227 -1.962 -11.649 12.022 Atomic orbital electron populations 1.21782 0.96065 1.01420 1.01742 1.21496 0.95436 0.96741 1.02259 1.21225 0.92266 0.97060 1.02092 1.22439 0.94337 0.95554 1.02047 0.86780 1.23042 1.02915 1.01313 0.90176 1.22150 0.97365 0.98087 1.02408 0.86308 1.19201 0.84348 0.81435 0.79354 1.90638 1.69309 1.33507 1.50388 1.48784 1.23658 1.08345 1.53328 1.22307 0.84626 0.98941 0.94688 1.20719 0.96512 0.93402 0.94819 0.89361 1.19850 0.92555 1.05199 1.04450 1.23698 0.98916 0.94625 0.95748 1.77289 0.89720 1.23536 1.21947 1.48354 1.06701 1.30197 1.31227 1.21781 0.79105 1.00534 1.02255 1.22332 0.97442 0.93645 0.95153 1.21249 0.89591 0.97049 0.85535 0.91256 1.42457 1.67261 1.26979 0.98500 1.19271 1.29443 1.01719 0.86857 0.91041 1.24714 1.01027 0.97743 0.96973 1.69674 1.46322 1.26983 1.14652 0.86188 0.78109 0.80437 0.81861 1.20518 1.21877 1.21952 1.23677 1.01426 0.82324 0.98079 0.92918 0.92762 0.92847 0.91950 0.91784 0.91665 0.91588 0.87846 0.88252 0.90602 0.91447 0.80319 0.91119 0.89588 0.89614 0.81054 0.78107 0.93544 0.92404 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.17 5.89 -26.73 -0.16 -1.32 16 3 C -0.09 -0.96 5.50 -26.73 -0.15 -1.10 16 4 C -0.13 -1.67 5.25 -90.62 -0.48 -2.15 16 5 H 0.11 1.67 7.60 -51.93 -0.39 1.27 16 6 C -0.14 -2.03 9.88 -26.73 -0.26 -2.29 16 7 C -0.18 -2.72 5.03 -91.78 -0.46 -3.18 16 8 H 0.12 1.65 7.64 -51.93 -0.40 1.25 16 9 C 0.57 10.14 7.70 -10.98 -0.08 10.05 16 10 O -0.56 -11.47 16.52 5.56 0.09 -11.38 16 11 N -0.61 -10.17 3.31 -169.03 -0.56 -10.73 16 12 C 0.12 1.80 6.56 -2.41 -0.02 1.78 16 13 C -0.03 -0.52 3.23 -90.37 -0.29 -0.81 16 14 H 0.09 1.52 7.66 -51.93 -0.40 1.12 16 15 C -0.21 -3.02 4.72 -105.05 -0.50 -3.52 16 16 C 0.06 0.79 10.91 -17.37 -0.19 0.60 16 17 N -0.30 -4.49 12.58 30.62 0.39 -4.10 16 18 N -0.38 -4.92 4.01 -68.16 -0.27 -5.19 16 19 C 0.10 0.86 11.47 59.85 0.69 1.55 16 20 C 0.06 0.79 11.39 -17.22 -0.20 0.60 16 21 C 0.18 3.22 3.27 -66.30 -0.22 3.00 16 22 H 0.07 1.29 7.40 -51.93 -0.38 0.90 16 23 N -0.71 -16.45 5.13 -51.85 -0.27 -16.72 16 24 C -0.24 -6.25 9.96 -15.06 -0.15 -6.40 16 25 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 26 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 27 N -0.93 -26.84 13.06 55.49 0.72 -26.11 16 28 Si 0.90 21.53 29.55 -169.99 -5.02 16.50 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 31 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 32 C 0.07 1.15 6.57 -2.17 -0.01 1.14 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 40 H 0.10 1.43 8.03 -51.93 -0.42 1.01 16 41 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 42 H 0.08 1.22 7.88 -51.93 -0.41 0.81 16 43 H 0.07 0.93 7.39 -51.93 -0.38 0.55 16 44 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 49 H 0.38 9.75 7.56 -40.82 -0.31 9.44 16 50 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 51 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 52 H 0.09 1.57 7.13 -51.93 -0.37 1.20 16 LS Contribution 426.21 15.07 6.42 6.42 Total: -1.00 -32.53 426.21 -9.61 -42.15 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -8.91 Total: 12.43 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.20 Total: -3.27 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: 0.01 Total: -62.85 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -32.53 -9.61 -42.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086995815.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.333 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds