Wall clock time and date at job start Wed Apr 1 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47048 * 2 1 4 4 H 1.09004 * 109.87437 * 53.60565 * 3 2 1 5 5 C 1.54316 * 109.88441 * 292.42652 * 3 2 1 6 6 H 1.09000 * 110.72074 * 336.75650 * 5 3 2 7 7 N 1.46497 * 110.72290 * 100.02435 * 5 3 2 8 8 C 1.34771 * 120.00587 * 205.00264 * 7 5 3 9 9 O 1.21632 * 119.99881 * 354.71632 * 8 7 5 10 10 C 1.47167 * 120.00490 * 174.71655 * 8 7 5 11 11 C 1.38404 * 126.88436 * 99.02157 * 10 8 7 12 12 C 1.50705 * 127.32207 * 359.97438 * 11 10 8 13 13 C 1.53779 * 113.61247 * 217.49260 * 12 11 10 14 14 C 1.53778 * 87.08012 * 220.01785 * 13 12 11 15 15 C 1.53776 * 113.61496 * 119.99290 * 12 11 10 16 16 C 1.39669 * 105.35661 * 180.02562 * 11 10 8 17 17 N 1.30862 * 107.86709 * 0.02562 * 16 11 10 18 18 N 1.28448 * 110.92002 * 359.70773 * 17 16 11 19 19 C 1.46502 * 125.18786 * 180.28069 * 18 17 16 20 20 C 1.55154 * 102.94453 * 218.39302 * 5 3 2 21 21 C 1.54693 * 101.67892 * 35.33222 * 20 5 3 22 22 N 1.47021 * 109.88165 * 174.61666 * 3 2 1 23 23 C 1.36938 * 125.64978 * 298.32307 * 22 3 2 24 24 H 1.08006 * 120.00023 * 349.32951 * 23 22 3 25 25 C 1.38810 * 120.00116 * 169.60204 * 23 22 3 26 26 N 1.31622 * 119.99936 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00098 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47124 * 60.00502 * 27 25 23 29 29 H 1.48506 * 109.47068 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47509 * 300.00462 * 27 25 23 31 31 H 1.08996 * 109.46919 * 65.36981 * 1 2 3 32 32 H 1.09001 * 109.47023 * 185.37700 * 1 2 3 33 33 H 1.09006 * 109.46958 * 305.37399 * 1 2 3 34 34 H 1.08997 * 109.47184 * 240.00186 * 2 1 3 35 35 H 1.09004 * 109.46851 * 119.99855 * 2 1 3 36 36 H 0.97004 * 119.99845 * 25.00474 * 7 5 3 37 37 H 1.08999 * 112.84627 * 348.79291 * 12 11 10 38 38 H 1.09003 * 113.61559 * 334.56396 * 13 12 11 39 39 H 1.08994 * 113.61396 * 105.46562 * 13 12 11 40 40 H 1.09001 * 113.61013 * 270.88353 * 14 13 12 41 41 H 1.08995 * 113.69629 * 139.99328 * 14 13 12 42 42 H 1.08999 * 113.61220 * 254.52802 * 15 12 11 43 43 H 1.08999 * 113.61846 * 25.34928 * 15 12 11 44 44 H 1.08004 * 126.06804 * 180.02562 * 16 11 10 45 45 H 1.08995 * 109.47659 * 274.96252 * 19 18 17 46 46 H 1.09004 * 109.47431 * 34.96417 * 19 18 17 47 47 H 1.09002 * 109.47385 * 154.95624 * 19 18 17 48 48 H 1.08994 * 111.00792 * 153.57842 * 20 5 3 49 49 H 1.09005 * 111.00078 * 277.42809 * 20 5 3 50 50 H 1.08995 * 110.39291 * 204.37039 * 21 20 5 51 51 H 1.09002 * 110.23382 * 82.10938 * 21 20 5 52 52 H 0.97001 * 120.00265 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5901 1.9946 0.8252 5 6 1.6930 2.1219 -1.3414 6 1 1.5487 1.3777 -2.1246 7 7 0.5045 2.9670 -1.2023 8 6 -0.2585 3.2396 -2.2793 9 8 0.0908 2.8651 -3.3825 10 6 -1.5142 3.9904 -2.1206 11 6 -1.7087 5.3416 -2.3487 12 6 -0.6848 6.3473 -2.8086 13 6 -0.8403 7.7290 -2.1518 14 6 -0.5110 8.3327 -3.5273 15 6 -1.0440 7.0270 -4.1404 16 6 -3.0553 5.5753 -2.0609 17 7 -3.5906 4.4388 -1.6943 18 7 -2.7224 3.4926 -1.7230 19 6 -2.9869 2.0935 -1.3781 20 6 2.9498 2.9851 -1.6292 21 6 4.0800 2.0886 -1.0707 22 7 3.5044 1.4551 0.1297 23 6 4.2158 0.9649 1.1922 24 1 3.7040 0.6808 2.0999 25 6 5.5954 0.8384 1.1047 26 7 6.2198 1.1900 0.0007 27 14 6.5658 0.1703 2.5543 28 1 6.0991 -1.2032 2.8717 29 1 8.0099 0.1356 2.2095 30 1 6.3602 1.0480 3.7344 31 1 -0.3633 0.4283 -0.9341 32 1 -0.3633 -1.0232 0.0963 33 1 -0.3633 0.5950 0.8380 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.2666 3.3304 -0.3349 37 1 0.3333 5.9594 -2.7770 38 1 -1.8548 7.9402 -1.8139 39 1 -0.0877 7.9382 -1.3916 40 1 0.5552 8.4889 -3.6916 41 1 -1.1103 9.2084 -3.7761 42 1 -0.4558 6.6695 -4.9856 43 1 -2.1141 7.0450 -4.3469 44 1 -3.5645 6.5253 -2.1289 45 1 -2.8933 1.9610 -0.3002 46 1 -3.9965 1.8267 -1.6906 47 1 -2.2677 1.4516 -1.8869 48 1 3.0731 3.1511 -2.6993 49 1 2.9049 3.9320 -1.0911 50 1 4.9464 2.6928 -0.8022 51 1 4.3571 1.3308 -1.8035 52 1 7.1839 1.1020 -0.0604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087579097.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:41 Heat of formation + Delta-G solvation = 82.650117 kcal Electronic energy + Delta-G solvation = -31840.762834 eV Core-core repulsion = 27843.218694 eV Total energy + Delta-G solvation = -3997.544140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.67313 -39.63954 -38.71048 -37.71179 -34.14212 -33.48041 -32.88205 -31.91420 -31.05121 -29.04535 -27.65232 -26.71967 -25.69343 -25.43896 -24.58051 -23.05269 -21.93068 -21.49922 -20.36858 -20.23721 -19.41831 -19.18017 -17.88870 -16.97840 -16.46910 -15.92165 -15.82423 -15.68576 -14.90671 -14.84576 -14.47553 -14.34201 -14.07948 -13.89471 -13.55333 -13.26015 -13.23196 -12.96379 -12.77532 -12.67911 -12.54644 -12.34395 -12.10846 -12.00454 -11.73862 -11.24074 -11.04514 -10.95113 -10.87538 -10.73206 -10.71736 -10.59250 -10.53946 -10.43382 -10.41863 -10.16034 -9.96939 -9.78035 -9.68665 -9.26659 -8.78669 -8.74606 -8.63514 -6.89232 -5.77597 -3.14917 1.54668 2.05116 2.51913 2.72769 3.23360 3.36467 3.41416 3.42313 4.24161 4.42722 4.49538 4.60482 4.62018 4.67858 4.85232 4.89190 4.99506 5.11398 5.14808 5.21753 5.27018 5.34370 5.43014 5.47940 5.49076 5.61561 5.61707 5.64875 5.70533 5.73595 5.76098 5.81508 5.89772 5.92757 6.15258 6.15740 6.16825 6.29286 6.35912 6.38176 6.40022 6.46016 6.58483 6.61459 6.63466 6.84002 7.03357 7.47634 7.51088 7.56157 7.75656 7.93226 8.14395 8.23034 9.13634 9.74655 10.40454 11.32552 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.003009 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.498113 B = 9304.231642 C =10575.034612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.137 3.863 6 H 0.095 0.905 7 N -0.700 5.700 8 C 0.589 3.411 9 O -0.521 6.521 10 C -0.024 4.024 11 C -0.141 4.141 12 C -0.038 4.038 13 C -0.130 4.130 14 C -0.143 4.143 15 C -0.129 4.129 16 C 0.007 3.993 17 N -0.286 5.286 18 N -0.274 5.274 19 C 0.086 3.914 20 C -0.156 4.156 21 C 0.171 3.829 22 N -0.594 5.594 23 C -0.229 4.229 24 H 0.076 0.924 25 C -0.004 4.004 26 N -0.917 5.917 27 Si 0.911 3.089 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.182 0.818 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.083 0.917 51 H 0.024 0.976 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.969 8.838 -4.055 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.054 3.946 4 H 0.053 0.947 5 C 0.033 3.967 6 H 0.113 0.887 7 N -0.350 5.350 8 C 0.371 3.629 9 O -0.395 6.395 10 C -0.152 4.152 11 C -0.151 4.151 12 C -0.058 4.058 13 C -0.167 4.167 14 C -0.180 4.180 15 C -0.166 4.166 16 C -0.170 4.170 17 N -0.116 5.116 18 N -0.062 5.062 19 C -0.054 4.054 20 C -0.196 4.196 21 C 0.045 3.955 22 N -0.318 5.318 23 C -0.357 4.357 24 H 0.093 0.907 25 C -0.200 4.200 26 N -0.564 5.564 27 Si 0.742 3.258 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.199 0.801 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.112 0.888 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.102 0.898 51 H 0.042 0.958 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.486 7.816 -4.408 20.548 hybrid contribution 1.101 -0.020 0.929 1.440 sum -17.385 7.796 -3.479 19.368 Atomic orbital electron populations 1.21793 0.97536 1.00622 1.00536 1.22033 0.93446 0.99227 1.02568 1.21053 0.87411 0.93369 0.92801 0.94730 1.22219 0.83163 0.92347 0.99008 0.88681 1.46111 1.27356 1.50934 1.10590 1.16982 0.82121 0.78835 0.84919 1.90855 1.72486 1.51215 1.24912 1.21483 0.88681 0.94870 1.10214 1.20483 0.95861 0.91663 1.07136 1.20865 0.96742 0.91656 0.96504 1.22958 1.02126 0.94787 0.96849 1.22827 1.01400 0.97194 0.96621 1.22939 1.01431 0.95715 0.96534 1.23290 0.92638 0.96609 1.04475 1.73129 1.20292 0.96938 1.21270 1.45504 1.04858 1.08681 1.47129 1.22214 1.04722 0.75574 1.02905 1.23404 0.96428 0.99187 1.00566 1.21493 0.93309 0.93313 0.87344 1.44439 0.98403 1.69337 1.19655 1.18902 0.89087 1.36223 0.91486 0.90668 1.24847 0.96692 1.01138 0.97359 1.69905 1.08261 1.52527 1.25701 0.86216 0.79157 0.78910 0.81550 1.21123 1.21566 1.21139 0.93735 0.93459 0.93387 0.92328 0.91484 0.76490 0.88659 0.89879 0.91251 0.90093 0.91415 0.91316 0.89989 0.80117 0.89392 0.88453 0.88817 0.91726 0.91908 0.89843 0.95753 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.66 37.16 0.36 -1.55 16 2 C -0.13 -2.30 5.44 -26.73 -0.15 -2.44 16 3 C 0.16 3.03 2.91 -66.96 -0.19 2.84 16 4 H 0.04 0.64 7.72 -51.93 -0.40 0.24 16 5 C 0.14 2.32 2.07 -66.10 -0.14 2.19 16 6 H 0.10 1.74 7.25 -51.93 -0.38 1.36 16 7 N -0.70 -9.79 4.96 -53.19 -0.26 -10.06 16 8 C 0.59 8.76 6.67 -12.64 -0.08 8.68 16 9 O -0.52 -9.60 16.81 5.25 0.09 -9.51 16 10 C -0.02 -0.32 6.71 -82.06 -0.55 -0.87 16 11 C -0.14 -1.71 5.49 -104.02 -0.57 -2.28 16 12 C -0.04 -0.42 4.12 -90.96 -0.37 -0.79 16 13 C -0.13 -1.13 7.58 -25.92 -0.20 -1.33 16 14 C -0.14 -1.17 8.08 -25.92 -0.21 -1.38 16 15 C -0.13 -1.23 7.63 -25.92 -0.20 -1.43 16 16 C 0.01 0.08 11.25 -17.43 -0.20 -0.11 16 17 N -0.29 -3.52 11.90 30.59 0.36 -3.16 16 18 N -0.27 -3.27 3.75 -63.88 -0.24 -3.51 16 19 C 0.09 0.74 11.21 59.85 0.67 1.42 16 20 C -0.16 -2.94 6.76 -24.70 -0.17 -3.11 16 21 C 0.17 3.99 5.48 -2.65 -0.01 3.97 16 22 N -0.59 -14.13 3.13 -162.71 -0.51 -14.64 16 23 C -0.23 -6.02 9.72 -15.06 -0.15 -6.16 16 24 H 0.08 1.91 7.83 -52.48 -0.41 1.50 16 25 C 0.00 -0.09 5.48 -17.43 -0.10 -0.19 16 26 N -0.92 -26.00 10.43 55.49 0.58 -25.42 16 27 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 31 H 0.04 0.55 7.34 -51.93 -0.38 0.17 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.08 8.01 -51.93 -0.42 0.67 16 35 H 0.07 1.26 7.84 -51.93 -0.41 0.86 16 36 H 0.40 4.97 8.36 -40.82 -0.34 4.63 16 37 H 0.10 1.19 7.94 -51.93 -0.41 0.78 16 38 H 0.08 0.64 7.19 -51.93 -0.37 0.26 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.73 8.03 -51.93 -0.42 0.32 16 44 H 0.18 1.47 7.68 -52.48 -0.40 1.07 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.83 7.52 -51.93 -0.39 0.44 16 48 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 50 H 0.08 2.19 6.64 -51.93 -0.34 1.84 16 51 H 0.02 0.62 8.13 -51.93 -0.42 0.20 16 52 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 415.30 15.07 6.26 6.26 Total: -1.00 -31.25 415.30 -9.86 -41.10 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.86 Total: 5.12 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.25 Total: -2.55 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.07 Total: -56.79 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.25 -9.86 -41.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087579097.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.755 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds