Wall clock time and date at job start Wed Apr 1 2020 05:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47147 * 2 1 4 4 H 1.09002 * 109.99926 * 304.84058 * 3 2 1 5 5 C 1.54330 * 109.99152 * 183.80193 * 3 2 1 6 6 H 1.09005 * 110.66828 * 337.04713 * 5 3 2 7 7 N 1.46506 * 110.85032 * 100.19980 * 5 3 2 8 8 C 1.34776 * 119.99738 * 200.14842 * 7 5 3 9 9 O 1.21681 * 120.00541 * 5.01646 * 8 7 5 10 10 C 1.46766 * 119.99480 * 185.02258 * 8 7 5 11 11 C 1.36824 * 126.91747 * 343.20706 * 10 8 7 12 12 N 1.33448 * 107.83862 * 179.97438 * 11 10 8 13 13 C 1.30557 * 109.68442 * 0.02562 * 12 11 10 14 14 N 1.34869 * 108.98792 * 359.71719 * 13 12 11 15 15 C 1.46447 * 124.99667 * 180.32227 * 14 13 12 16 16 H 1.09003 * 109.57993 * 257.43245 * 15 14 13 17 17 C 1.53000 * 109.57860 * 137.16393 * 15 14 13 18 18 C 1.53262 * 108.81380 * 17.23005 * 15 14 13 19 19 C 1.53162 * 109.43965 * 309.76705 * 18 15 14 20 20 C 1.51113 * 127.09181 * 179.91875 * 13 12 11 21 21 C 1.55163 * 103.02373 * 218.66516 * 5 3 2 22 22 C 1.54909 * 101.57738 * 35.30817 * 21 5 3 23 23 N 1.47022 * 109.88286 * 65.93730 * 3 2 1 24 24 C 1.36937 * 125.64558 * 298.39588 * 23 3 2 25 25 H 1.07997 * 120.00166 * 335.64385 * 24 23 3 26 26 C 1.38817 * 119.99962 * 155.92318 * 24 23 3 27 27 N 1.31622 * 119.99845 * 166.43191 * 26 24 23 28 28 Si 1.86790 * 119.99842 * 346.43249 * 26 24 23 29 29 H 1.48495 * 109.47478 * 86.12170 * 28 26 24 30 30 H 1.48509 * 109.47144 * 206.12079 * 28 26 24 31 31 H 1.48502 * 109.47488 * 326.11818 * 28 26 24 32 32 H 1.08992 * 109.47256 * 53.46966 * 1 2 3 33 33 H 1.09010 * 109.47368 * 173.47301 * 1 2 3 34 34 H 1.09000 * 109.47438 * 293.46692 * 1 2 3 35 35 H 1.08999 * 109.47298 * 239.99931 * 2 1 3 36 36 H 1.09003 * 109.47342 * 120.00403 * 2 1 3 37 37 H 0.96994 * 119.99701 * 20.14448 * 7 5 3 38 38 H 1.08005 * 126.08035 * 0.02562 * 11 10 8 39 39 H 1.09001 * 109.46872 * 91.33653 * 17 15 14 40 40 H 1.09000 * 109.46641 * 211.33070 * 17 15 14 41 41 H 1.08993 * 109.47159 * 331.32830 * 17 15 14 42 42 H 1.08999 * 109.47691 * 69.75146 * 18 15 14 43 43 H 1.08996 * 109.48108 * 189.77073 * 18 15 14 44 44 H 1.08998 * 109.51106 * 189.26205 * 19 18 15 45 45 H 1.08998 * 109.51287 * 309.40599 * 19 18 15 46 46 H 1.09007 * 109.70406 * 315.74736 * 20 13 12 47 47 H 1.08994 * 109.71407 * 76.37133 * 20 13 12 48 48 H 1.08997 * 111.00480 * 277.23440 * 21 5 3 49 49 H 1.08993 * 111.00431 * 153.37944 * 21 5 3 50 50 H 1.09003 * 110.36633 * 204.15735 * 22 21 5 51 51 H 1.09003 * 110.37082 * 81.82905 * 22 21 5 52 52 H 0.96995 * 119.99442 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6125 1.9890 -0.8407 5 6 3.5802 1.4575 -0.0962 6 1 3.9969 0.5136 0.2554 7 7 4.0143 1.7348 -1.4677 8 6 5.2594 1.4007 -1.8608 9 8 5.9917 0.7876 -1.1069 10 6 5.7322 1.7768 -3.1985 11 6 4.9647 2.1689 -4.2612 12 7 5.7825 2.4202 -5.2853 13 6 7.0187 2.2068 -4.9236 14 7 7.0367 1.8115 -3.6343 15 6 8.2441 1.4854 -2.8725 16 1 8.3460 0.4029 -2.7951 17 6 8.1461 2.0926 -1.4715 18 6 9.4607 2.0649 -3.6025 19 6 9.4167 1.6491 -5.0760 20 6 8.2577 2.3677 -5.7736 21 6 3.9783 2.6201 0.8512 22 6 2.9104 2.4923 1.9661 23 7 1.6751 2.1018 1.2624 24 6 0.3993 2.3129 1.7129 25 1 -0.4201 2.3611 1.0111 26 6 0.1600 2.4707 3.0711 27 7 -1.0002 2.9340 3.4855 28 14 1.4845 2.0255 4.3107 29 1 2.3910 3.1856 4.5048 30 1 0.8510 1.6703 5.6060 31 1 2.2647 0.8667 3.8070 32 1 -0.3633 0.6117 -0.8257 33 1 -0.3634 -1.0211 -0.1168 34 1 -0.3634 0.4092 0.9426 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 3.4057 2.1586 -2.0927 38 1 3.8886 2.2599 -4.2694 39 1 7.6969 1.3682 -0.7922 40 1 9.1437 2.3525 -1.1176 41 1 7.5280 2.9896 -1.5068 42 1 9.4433 3.1525 -3.5312 43 1 10.3742 1.6853 -3.1448 44 1 10.3566 1.9177 -5.5582 45 1 9.2658 0.5719 -5.1459 46 1 8.0862 1.9346 -6.7591 47 1 8.5001 3.4257 -5.8736 48 1 3.9004 3.5816 0.3439 49 1 4.9810 2.4716 1.2518 50 1 2.7731 3.4483 2.4712 51 1 3.1990 1.7222 2.6815 52 1 -1.1672 3.0446 4.4345 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087580481.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:23 Heat of formation + Delta-G solvation = 48.420142 kcal Electronic energy + Delta-G solvation = -31882.470470 eV Core-core repulsion = 27883.442007 eV Total energy + Delta-G solvation = -3999.028463 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.71986 -39.70662 -37.98413 -37.42261 -34.41864 -33.88219 -32.54807 -32.19251 -30.97821 -30.14259 -28.93993 -27.49180 -26.94025 -24.52914 -23.22650 -23.19279 -22.24976 -22.20182 -20.97468 -20.28850 -19.66057 -19.10887 -17.82130 -17.00098 -16.51226 -16.07339 -15.76315 -15.28858 -15.12484 -15.01281 -14.99450 -14.64472 -14.34803 -13.82094 -13.65803 -13.59075 -13.27452 -13.17763 -12.94527 -12.60763 -12.50645 -12.45148 -12.20438 -11.95318 -11.84814 -11.60684 -11.56126 -11.43672 -11.15001 -11.05700 -10.97737 -10.65534 -10.51351 -10.31653 -10.25951 -10.04709 -9.86836 -9.82262 -9.71780 -9.33565 -8.92072 -8.69048 -8.54540 -7.01849 -5.95333 -3.32710 1.20207 2.25384 2.65764 3.19693 3.28960 3.33021 3.44991 3.47097 3.88670 4.07465 4.18509 4.23330 4.50986 4.58632 4.75646 4.80937 4.88764 4.92709 5.00593 5.10255 5.12717 5.18304 5.21590 5.25565 5.29459 5.32557 5.42255 5.50829 5.56856 5.58676 5.74489 5.77827 5.84892 5.91087 5.98605 6.06045 6.09450 6.16922 6.29501 6.36312 6.42511 6.51949 6.56330 6.62898 6.72586 6.75120 6.85850 7.01648 7.35297 7.49521 7.73700 7.75842 8.20431 8.30367 8.79836 9.65247 10.14234 11.20397 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.002709 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.182431 B =10333.886156 C =11038.496309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C 0.160 3.840 4 H 0.047 0.953 5 C 0.137 3.863 6 H 0.098 0.902 7 N -0.701 5.701 8 C 0.593 3.407 9 O -0.540 6.540 10 C -0.076 4.076 11 C 0.032 3.968 12 N -0.492 5.492 13 C 0.224 3.776 14 N -0.416 5.416 15 C 0.135 3.865 16 H 0.095 0.905 17 C -0.174 4.174 18 C -0.133 4.133 19 C -0.128 4.128 20 C -0.035 4.035 21 C -0.139 4.139 22 C 0.102 3.898 23 N -0.600 5.600 24 C -0.232 4.232 25 H 0.097 0.903 26 C 0.021 3.979 27 N -0.914 5.914 28 Si 0.889 3.111 29 H -0.287 1.287 30 H -0.305 1.305 31 H -0.269 1.269 32 H 0.041 0.959 33 H 0.031 0.969 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.402 0.598 38 H 0.179 0.821 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.061 0.939 51 H 0.035 0.965 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.123 -2.228 -16.660 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C 0.053 3.947 4 H 0.065 0.935 5 C 0.032 3.968 6 H 0.116 0.884 7 N -0.351 5.351 8 C 0.379 3.621 9 O -0.419 6.419 10 C -0.193 4.193 11 C -0.122 4.122 12 N -0.210 5.210 13 C -0.038 4.038 14 N -0.098 5.098 15 C 0.033 3.967 16 H 0.113 0.887 17 C -0.231 4.231 18 C -0.170 4.170 19 C -0.166 4.166 20 C -0.074 4.074 21 C -0.179 4.179 22 C -0.023 4.023 23 N -0.326 5.326 24 C -0.359 4.359 25 H 0.114 0.886 26 C -0.177 4.177 27 N -0.558 5.558 28 Si 0.721 3.279 29 H -0.214 1.214 30 H -0.233 1.233 31 H -0.195 1.195 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.237 0.763 38 H 0.196 0.804 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.117 0.883 47 H 0.110 0.890 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.079 0.921 51 H 0.053 0.947 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 21.341 -2.370 -16.571 27.123 hybrid contribution 0.494 -0.280 1.327 1.444 sum 21.835 -2.651 -15.244 26.761 Atomic orbital electron populations 1.21957 0.95232 0.99362 1.04600 1.21894 0.97379 0.97104 0.99993 1.21158 0.89608 0.92714 0.91226 0.93531 1.22144 0.95754 0.99192 0.79668 0.88448 1.45692 1.13420 1.61873 1.14114 1.16707 0.82144 0.79249 0.83959 1.90656 1.54813 1.40971 1.55483 1.20637 0.84792 1.16212 0.97645 1.22705 0.99654 1.01529 0.88347 1.69923 0.99271 1.21849 1.29967 1.23437 0.95576 1.01499 0.83285 1.45374 1.05992 1.47616 1.10787 1.21676 0.81590 1.01164 0.92287 0.88690 1.22549 1.02620 1.02751 0.95227 1.22073 0.97189 1.02172 0.95600 1.21690 0.98741 1.01125 0.95060 1.20238 0.87284 1.02587 0.97261 1.23129 0.98922 0.98317 0.97510 1.22151 0.86642 0.99077 0.94440 1.44724 1.01734 1.66127 1.20039 1.18598 0.82512 1.43246 0.91575 0.88584 1.25108 0.95990 0.99846 0.96795 1.69743 1.23009 1.48008 1.15054 0.86964 0.81146 0.79097 0.80711 1.21446 1.23304 1.19504 0.93994 0.94986 0.88572 0.93825 0.92469 0.76252 0.80398 0.87349 0.91515 0.92403 0.90493 0.89065 0.89697 0.91042 0.88299 0.89045 0.90979 0.91387 0.92058 0.94730 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.03 37.16 0.34 -2.54 16 2 C -0.12 -2.21 5.47 -26.73 -0.15 -2.36 16 3 C 0.16 2.92 3.00 -66.95 -0.20 2.72 16 4 H 0.05 0.83 7.69 -51.93 -0.40 0.43 16 5 C 0.14 2.20 2.80 -66.09 -0.19 2.02 16 6 H 0.10 1.68 7.33 -51.93 -0.38 1.30 16 7 N -0.70 -9.39 5.19 -53.30 -0.28 -9.66 16 8 C 0.59 8.33 7.18 -12.81 -0.09 8.24 16 9 O -0.54 -8.66 12.46 5.21 0.06 -8.60 16 10 C -0.08 -0.97 6.48 -82.35 -0.53 -1.51 16 11 C 0.03 0.39 11.37 -17.36 -0.20 0.19 16 12 N -0.49 -6.37 11.20 -10.36 -0.12 -6.49 16 13 C 0.22 2.48 7.64 -155.32 -1.19 1.29 16 14 N -0.42 -4.79 2.95 -102.73 -0.30 -5.09 16 15 C 0.13 1.26 3.28 -67.82 -0.22 1.04 16 16 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 17 C -0.17 -1.81 8.10 37.16 0.30 -1.51 16 18 C -0.13 -0.80 5.08 -26.51 -0.13 -0.93 16 19 C -0.13 -0.65 5.94 -26.55 -0.16 -0.81 16 20 C -0.03 -0.24 6.33 -27.59 -0.17 -0.41 16 21 C -0.14 -2.36 6.77 -24.58 -0.17 -2.52 16 22 C 0.10 2.14 4.69 -2.53 -0.01 2.13 16 23 N -0.60 -13.46 2.91 -162.57 -0.47 -13.93 16 24 C -0.23 -6.11 7.93 -15.06 -0.12 -6.23 16 25 H 0.10 2.69 7.21 -52.49 -0.38 2.31 16 26 C 0.02 0.59 5.49 -17.43 -0.10 0.50 16 27 N -0.91 -27.36 13.97 55.49 0.78 -26.59 16 28 Si 0.89 22.19 24.31 -169.99 -4.13 18.06 16 29 H -0.29 -7.00 6.71 56.52 0.38 -6.62 16 30 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 31 H -0.27 -6.54 6.02 56.52 0.34 -6.20 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.10 2.15 5.35 -51.93 -0.28 1.87 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.40 4.57 7.45 -40.82 -0.30 4.27 16 38 H 0.18 1.71 7.64 -52.48 -0.40 1.31 16 39 H 0.11 1.40 5.24 -51.93 -0.27 1.13 16 40 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 41 H 0.06 0.69 7.69 -51.93 -0.40 0.29 16 42 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 43 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 46 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 49 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.06 1.36 6.72 -51.93 -0.35 1.02 16 51 H 0.04 0.77 5.03 -51.93 -0.26 0.51 16 52 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -32.10 388.68 -10.13 -42.23 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.54 Total: 4.91 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.99 Total: -0.70 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.39 Total: -61.76 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.06 Total: -8.60 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.13 Total: 18.06 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.10 -10.13 -42.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087580481.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.650 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds