Wall clock time and date at job start Wed Apr 1 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47252 * 2 1 4 4 H 1.09008 * 109.99409 * 302.38739 * 3 2 1 5 5 C 1.54324 * 109.88464 * 181.29018 * 3 2 1 6 6 H 1.08997 * 110.71665 * 336.93233 * 5 3 2 7 7 N 1.46502 * 110.71796 * 100.02512 * 5 3 2 8 8 C 1.34772 * 119.99457 * 202.56053 * 7 5 3 9 9 O 1.21286 * 120.00623 * 0.02562 * 8 7 5 10 10 C 1.50702 * 119.99859 * 179.97438 * 8 7 5 11 11 C 1.50702 * 109.47462 * 179.97438 * 10 8 7 12 12 C 1.34857 * 125.96171 * 125.00072 * 11 10 8 13 13 N 1.36308 * 106.69032 * 179.97438 * 12 11 10 14 14 C 1.35424 * 107.39717 * 0.07625 * 13 12 11 15 15 N 1.30090 * 108.63119 * 359.90428 * 14 13 12 16 16 C 1.51049 * 123.98345 * 179.90923 * 14 13 12 17 17 C 1.53397 * 108.20654 * 344.06821 * 16 14 13 18 18 C 1.53144 * 109.24140 * 48.82308 * 17 16 14 19 19 C 1.46467 * 127.78183 * 180.14864 * 13 12 11 20 20 C 1.55158 * 103.09996 * 218.47703 * 5 3 2 21 21 C 1.54907 * 101.58202 * 35.41072 * 20 5 3 22 22 N 1.47321 * 110.06352 * 63.55394 * 3 2 1 23 23 C 1.36938 * 125.61793 * 298.24965 * 22 3 2 24 24 H 1.07996 * 119.99904 * 326.21809 * 23 22 3 25 25 C 1.38813 * 119.99810 * 146.21131 * 23 22 3 26 26 N 1.31625 * 119.99646 * 162.09146 * 25 23 22 27 27 Si 1.86802 * 120.00219 * 342.10122 * 25 23 22 28 28 H 1.48500 * 109.46987 * 88.96484 * 27 25 23 29 29 H 1.48496 * 109.46729 * 208.96514 * 27 25 23 30 30 H 1.48498 * 109.47006 * 328.96628 * 27 25 23 31 31 H 1.09001 * 109.47197 * 172.18153 * 1 2 3 32 32 H 1.09003 * 109.47455 * 292.17880 * 1 2 3 33 33 H 1.08997 * 109.46936 * 52.18516 * 1 2 3 34 34 H 1.08996 * 109.47659 * 239.99778 * 2 1 3 35 35 H 1.09001 * 109.47385 * 119.99357 * 2 1 3 36 36 H 0.97001 * 120.00201 * 22.55327 * 7 5 3 37 37 H 1.09001 * 109.46923 * 59.99790 * 10 8 7 38 38 H 1.09000 * 109.47748 * 300.00226 * 10 8 7 39 39 H 1.08002 * 126.65402 * 359.71161 * 12 11 10 40 40 H 1.08997 * 109.71512 * 103.74742 * 16 14 13 41 41 H 1.08995 * 109.71171 * 224.34369 * 16 14 13 42 42 H 1.09004 * 109.50926 * 168.75226 * 17 16 14 43 43 H 1.09003 * 109.50933 * 288.88679 * 17 16 14 44 44 H 1.09001 * 109.47006 * 50.51279 * 18 17 16 45 45 H 1.09002 * 109.46797 * 170.50300 * 18 17 16 46 46 H 1.08998 * 109.58775 * 43.02091 * 19 13 12 47 47 H 1.09004 * 109.58281 * 282.60986 * 19 13 12 48 48 H 1.08997 * 111.00028 * 153.49066 * 20 5 3 49 49 H 1.09002 * 111.00261 * 277.29975 * 20 5 3 50 50 H 1.09002 * 110.36481 * 81.83022 * 21 20 5 51 51 H 1.08997 * 110.36348 * 204.03962 * 21 20 5 52 52 H 0.96994 * 119.99423 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6470 1.9768 -0.8650 5 6 3.5829 1.4537 -0.0327 6 1 3.9835 0.5156 0.3513 7 7 4.0707 1.7062 -1.3908 8 6 5.3129 1.3200 -1.7432 9 8 6.0268 0.7632 -0.9362 10 6 5.8146 1.5791 -3.1405 11 6 7.2211 1.0550 -3.2745 12 6 7.6544 0.1781 -4.2030 13 7 8.9815 -0.0211 -3.9642 14 6 9.3192 0.7390 -2.8955 15 7 8.2618 1.3795 -2.4903 16 6 10.7093 0.7994 -2.3077 17 6 11.5082 -0.3958 -2.8429 18 6 11.3432 -0.4730 -4.3635 19 6 9.9062 -0.8850 -4.7017 20 6 3.9460 2.6322 0.9090 21 6 2.8351 2.5256 1.9833 22 7 1.6275 2.1244 1.2390 23 6 0.3355 2.3465 1.6348 24 1 -0.4299 2.5376 0.8973 25 6 0.0097 2.3259 2.9840 26 7 -1.1139 2.8722 3.3981 27 14 1.1660 1.5231 4.2120 28 1 2.1478 2.5264 4.6965 29 1 0.3832 1.0015 5.3610 30 1 1.8863 0.4032 3.5545 31 1 -0.3633 -1.0181 -0.1398 32 1 -0.3634 0.3879 0.9516 33 1 -0.3633 0.6301 -0.8118 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 3.4996 2.1511 -2.0365 37 1 5.8066 2.6513 -3.3364 38 1 5.1683 1.0739 -3.8582 39 1 7.0634 -0.2809 -4.9818 40 1 11.1944 1.7289 -2.6055 41 1 10.6514 0.7468 -1.2206 42 1 12.5625 -0.2684 -2.5971 43 1 11.1366 -1.3146 -2.3892 44 1 11.5541 0.5024 -4.8018 45 1 12.0371 -1.2104 -4.7672 46 1 9.7363 -0.7724 -5.7724 47 1 9.7460 -1.9235 -4.4116 48 1 4.9321 2.4895 1.3509 49 1 3.8905 3.5848 0.3820 50 1 3.0941 1.7678 2.7228 51 1 2.6816 3.4901 2.4672 52 1 -1.3414 2.8581 4.3409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087581036.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:12 Heat of formation + Delta-G solvation = 38.978228 kcal Electronic energy + Delta-G solvation = -30761.411807 eV Core-core repulsion = 26761.973912 eV Total energy + Delta-G solvation = -3999.437895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.46683 -39.57915 -37.87824 -36.90828 -33.97658 -33.46242 -32.38911 -32.28636 -31.70909 -29.47991 -29.01997 -27.69531 -26.75563 -24.46662 -23.94672 -22.56618 -22.05335 -21.41619 -20.29501 -20.05362 -19.39076 -19.08213 -17.17078 -16.93137 -16.77559 -16.06851 -15.87315 -15.22893 -15.03337 -14.77834 -14.62872 -14.41205 -14.18032 -13.94437 -13.87230 -13.49013 -13.32952 -13.11597 -12.81852 -12.66690 -12.36005 -12.27168 -12.10924 -11.98045 -11.70117 -11.61746 -11.50594 -11.43161 -11.28166 -10.98431 -10.74939 -10.56959 -10.34400 -10.19522 -10.00745 -9.93171 -9.81948 -9.60685 -9.50204 -9.37163 -8.61736 -8.47735 -8.30883 -6.83185 -5.95522 -3.35003 1.89339 2.55836 2.95449 3.00631 3.40430 3.51538 3.56884 3.59487 3.96229 4.09920 4.16862 4.24508 4.57696 4.64191 4.78078 4.84930 4.89352 4.94557 4.98244 5.13027 5.18827 5.25053 5.26268 5.29716 5.36164 5.38382 5.41651 5.44800 5.55104 5.67977 5.73372 5.80267 5.91371 6.00834 6.07706 6.17982 6.21526 6.29681 6.48017 6.56044 6.62254 6.64481 6.71817 6.74485 6.85990 6.91542 7.05330 7.15052 7.46025 7.84522 7.91385 8.10573 8.35566 8.59633 8.86904 9.69101 10.25662 11.20025 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.002170 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.280221 B =12898.350509 C =13440.890704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.155 3.845 4 H 0.046 0.954 5 C 0.137 3.863 6 H 0.091 0.909 7 N -0.722 5.722 8 C 0.514 3.486 9 O -0.523 6.523 10 C -0.054 4.054 11 C 0.021 3.979 12 C -0.052 4.052 13 N -0.459 5.459 14 C 0.205 3.795 15 N -0.457 5.457 16 C -0.033 4.033 17 C -0.126 4.126 18 C -0.134 4.134 19 C 0.104 3.896 20 C -0.140 4.140 21 C 0.117 3.883 22 N -0.599 5.599 23 C -0.233 4.233 24 H 0.087 0.913 25 C 0.030 3.970 26 N -0.906 5.906 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.302 1.302 30 H -0.270 1.270 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.398 0.602 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.173 0.827 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.023 0.977 51 H 0.058 0.942 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.657 -6.724 -20.341 31.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.048 3.952 4 H 0.063 0.937 5 C 0.032 3.968 6 H 0.110 0.890 7 N -0.374 5.374 8 C 0.299 3.701 9 O -0.398 6.398 10 C -0.095 4.095 11 C -0.109 4.109 12 C -0.185 4.185 13 N -0.143 5.143 14 C -0.058 4.058 15 N -0.174 5.174 16 C -0.072 4.072 17 C -0.164 4.164 18 C -0.172 4.172 19 C -0.018 4.018 20 C -0.179 4.179 21 C -0.008 4.008 22 N -0.325 5.325 23 C -0.360 4.360 24 H 0.105 0.895 25 C -0.170 4.170 26 N -0.549 5.549 27 Si 0.711 3.289 28 H -0.212 1.212 29 H -0.230 1.230 30 H -0.196 1.196 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.232 0.768 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.190 0.810 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.085 0.915 49 H 0.089 0.911 50 H 0.041 0.959 51 H 0.076 0.924 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 24.023 -6.639 -19.016 31.350 hybrid contribution 0.167 -0.928 -0.245 0.975 sum 24.191 -7.568 -19.260 31.834 Atomic orbital electron populations 1.21910 0.95235 0.98891 1.04752 1.21870 0.97326 0.97308 0.99758 1.21305 0.89788 0.92250 0.91819 0.93683 1.22029 0.94691 0.98917 0.81212 0.89048 1.46028 1.15544 1.61602 1.14185 1.20369 0.81368 0.78729 0.89599 1.90720 1.55393 1.41107 1.52538 1.19877 0.91055 1.03030 0.95561 1.19943 0.94620 1.00913 0.95446 1.22175 0.84618 1.06090 1.05622 1.45281 1.08560 1.35173 1.25262 1.23260 0.97309 0.95308 0.89887 1.69954 0.97557 1.24232 1.25690 1.20168 0.86543 0.99231 1.01272 1.21678 1.01090 0.98832 0.94788 1.21893 0.94605 1.03306 0.97400 1.21942 0.88941 0.94164 0.96788 1.23107 0.98736 0.98291 0.97772 1.21905 0.86674 0.98416 0.93835 1.44777 1.01723 1.64442 1.21576 1.18451 0.83228 1.42306 0.92028 0.89517 1.25379 0.95674 0.98636 0.97270 1.69798 1.24565 1.45069 1.15451 0.86868 0.80232 0.80953 0.80895 1.21231 1.23017 1.19564 0.95298 0.88669 0.93982 0.94005 0.92763 0.76830 0.87994 0.88000 0.80990 0.89463 0.88651 0.89982 0.91093 0.90612 0.89374 0.89364 0.89934 0.91467 0.91093 0.95945 0.92396 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.03 37.16 0.34 -2.63 16 2 C -0.12 -2.35 5.49 -26.73 -0.15 -2.49 16 3 C 0.16 3.02 3.03 -66.79 -0.20 2.82 16 4 H 0.05 0.85 7.70 -51.92 -0.40 0.45 16 5 C 0.14 2.44 2.79 -66.09 -0.18 2.25 16 6 H 0.09 1.81 7.33 -51.93 -0.38 1.43 16 7 N -0.72 -10.38 5.19 -52.03 -0.27 -10.65 16 8 C 0.51 7.87 7.82 -10.99 -0.09 7.78 16 9 O -0.52 -10.42 15.25 5.55 0.08 -10.34 16 10 C -0.05 -0.61 6.26 -29.03 -0.18 -0.79 16 11 C 0.02 0.28 5.87 -82.72 -0.49 -0.21 16 12 C -0.05 -0.55 11.53 -16.76 -0.19 -0.75 16 13 N -0.46 -4.53 3.13 -113.75 -0.36 -4.88 16 14 C 0.20 2.48 7.65 -155.24 -1.19 1.29 16 15 N -0.46 -7.07 10.62 -6.88 -0.07 -7.14 16 16 C -0.03 -0.28 6.33 -27.51 -0.17 -0.45 16 17 C -0.13 -0.66 5.96 -26.45 -0.16 -0.82 16 18 C -0.13 -0.55 5.94 -26.52 -0.16 -0.71 16 19 C 0.10 0.57 6.98 -3.92 -0.03 0.54 16 20 C -0.14 -2.61 6.77 -24.58 -0.17 -2.78 16 21 C 0.12 2.61 4.98 -2.53 -0.01 2.59 16 22 N -0.60 -14.08 2.73 -162.35 -0.44 -14.52 16 23 C -0.23 -6.29 7.36 -15.06 -0.11 -6.40 16 24 H 0.09 2.50 7.81 -52.49 -0.41 2.09 16 25 C 0.03 0.87 5.45 -17.43 -0.10 0.77 16 26 N -0.91 -27.42 13.97 55.49 0.78 -26.65 16 27 Si 0.88 22.83 24.71 -169.99 -4.20 18.63 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 30 H -0.27 -6.97 6.77 56.52 0.38 -6.58 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 2.23 5.60 -51.93 -0.29 1.94 16 33 H 0.04 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.40 4.56 8.34 -40.82 -0.34 4.22 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 39 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 44 H 0.08 0.33 8.12 -51.93 -0.42 -0.10 16 45 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 49 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 50 H 0.02 0.54 5.29 -51.93 -0.27 0.26 16 51 H 0.06 1.34 7.99 -51.93 -0.41 0.92 16 52 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -36.53 402.45 -10.50 -47.03 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.85 Total: 2.42 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -3.23 Total: 0.04 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: -0.37 Total: -63.84 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.20 Total: 18.63 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.53 -10.50 -47.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087581036.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.006 kcal (2) G-P(sol) polarization free energy of solvation -36.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds