Wall clock time and date at job start Wed Apr 1 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47252 * 2 1 4 4 H 1.09008 * 109.99409 * 302.38739 * 3 2 1 5 5 C 1.54324 * 109.88464 * 181.29018 * 3 2 1 6 6 H 1.08997 * 110.71665 * 336.93233 * 5 3 2 7 7 N 1.46502 * 110.71796 * 100.02512 * 5 3 2 8 8 C 1.34772 * 119.99457 * 202.56053 * 7 5 3 9 9 O 1.21286 * 120.00623 * 0.02562 * 8 7 5 10 10 C 1.50702 * 119.99859 * 179.97438 * 8 7 5 11 11 C 1.50702 * 109.47462 * 179.97438 * 10 8 7 12 12 C 1.34857 * 125.96171 * 125.00072 * 11 10 8 13 13 N 1.36308 * 106.69032 * 179.97438 * 12 11 10 14 14 C 1.35424 * 107.39717 * 0.07625 * 13 12 11 15 15 N 1.30090 * 108.63119 * 359.90428 * 14 13 12 16 16 C 1.51049 * 123.98345 * 179.90923 * 14 13 12 17 17 C 1.53397 * 108.20654 * 344.06821 * 16 14 13 18 18 C 1.53144 * 109.24140 * 48.82308 * 17 16 14 19 19 C 1.46467 * 127.78183 * 180.14864 * 13 12 11 20 20 C 1.55158 * 103.09996 * 218.47703 * 5 3 2 21 21 C 1.54907 * 101.58202 * 35.41072 * 20 5 3 22 22 N 1.47321 * 110.06352 * 63.55394 * 3 2 1 23 23 C 1.36938 * 125.61793 * 298.24965 * 22 3 2 24 24 H 1.07996 * 119.99904 * 326.21809 * 23 22 3 25 25 C 1.38813 * 119.99810 * 146.21131 * 23 22 3 26 26 N 1.31625 * 119.99646 * 162.09146 * 25 23 22 27 27 Si 1.86802 * 120.00219 * 342.10122 * 25 23 22 28 28 H 1.48500 * 109.46987 * 88.96484 * 27 25 23 29 29 H 1.48496 * 109.46729 * 208.96514 * 27 25 23 30 30 H 1.48498 * 109.47006 * 328.96628 * 27 25 23 31 31 H 1.09001 * 109.47197 * 172.18153 * 1 2 3 32 32 H 1.09003 * 109.47455 * 292.17880 * 1 2 3 33 33 H 1.08997 * 109.46936 * 52.18516 * 1 2 3 34 34 H 1.08996 * 109.47659 * 239.99778 * 2 1 3 35 35 H 1.09001 * 109.47385 * 119.99357 * 2 1 3 36 36 H 0.97001 * 120.00201 * 22.55327 * 7 5 3 37 37 H 1.09001 * 109.46923 * 59.99790 * 10 8 7 38 38 H 1.09000 * 109.47748 * 300.00226 * 10 8 7 39 39 H 1.08002 * 126.65402 * 359.71161 * 12 11 10 40 40 H 1.08997 * 109.71512 * 103.74742 * 16 14 13 41 41 H 1.08995 * 109.71171 * 224.34369 * 16 14 13 42 42 H 1.09004 * 109.50926 * 168.75226 * 17 16 14 43 43 H 1.09003 * 109.50933 * 288.88679 * 17 16 14 44 44 H 1.09001 * 109.47006 * 50.51279 * 18 17 16 45 45 H 1.09002 * 109.46797 * 170.50300 * 18 17 16 46 46 H 1.08998 * 109.58775 * 43.02091 * 19 13 12 47 47 H 1.09004 * 109.58281 * 282.60986 * 19 13 12 48 48 H 1.08997 * 111.00028 * 153.49066 * 20 5 3 49 49 H 1.09002 * 111.00261 * 277.29975 * 20 5 3 50 50 H 1.09002 * 110.36481 * 81.83022 * 21 20 5 51 51 H 1.08997 * 110.36348 * 204.03962 * 21 20 5 52 52 H 0.96994 * 119.99423 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6470 1.9768 -0.8650 5 6 3.5829 1.4537 -0.0327 6 1 3.9835 0.5156 0.3513 7 7 4.0707 1.7062 -1.3908 8 6 5.3129 1.3200 -1.7432 9 8 6.0268 0.7632 -0.9362 10 6 5.8146 1.5791 -3.1405 11 6 7.2211 1.0550 -3.2745 12 6 7.6544 0.1781 -4.2030 13 7 8.9815 -0.0211 -3.9642 14 6 9.3192 0.7390 -2.8955 15 7 8.2618 1.3795 -2.4903 16 6 10.7093 0.7994 -2.3077 17 6 11.5082 -0.3958 -2.8429 18 6 11.3432 -0.4730 -4.3635 19 6 9.9062 -0.8850 -4.7017 20 6 3.9460 2.6322 0.9090 21 6 2.8351 2.5256 1.9833 22 7 1.6275 2.1244 1.2390 23 6 0.3355 2.3465 1.6348 24 1 -0.4299 2.5376 0.8973 25 6 0.0097 2.3259 2.9840 26 7 -1.1139 2.8722 3.3981 27 14 1.1660 1.5231 4.2120 28 1 2.1478 2.5264 4.6965 29 1 0.3832 1.0015 5.3610 30 1 1.8863 0.4032 3.5545 31 1 -0.3633 -1.0181 -0.1398 32 1 -0.3634 0.3879 0.9516 33 1 -0.3633 0.6301 -0.8118 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 3.4996 2.1511 -2.0365 37 1 5.8066 2.6513 -3.3364 38 1 5.1683 1.0739 -3.8582 39 1 7.0634 -0.2809 -4.9818 40 1 11.1944 1.7289 -2.6055 41 1 10.6514 0.7468 -1.2206 42 1 12.5625 -0.2684 -2.5971 43 1 11.1366 -1.3146 -2.3892 44 1 11.5541 0.5024 -4.8018 45 1 12.0371 -1.2104 -4.7672 46 1 9.7363 -0.7724 -5.7724 47 1 9.7460 -1.9235 -4.4116 48 1 4.9321 2.4895 1.3509 49 1 3.8905 3.5848 0.3820 50 1 3.0941 1.7678 2.7228 51 1 2.6816 3.4901 2.4672 52 1 -1.3414 2.8581 4.3409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087581036.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:11 Heat of formation + Delta-G solvation = 14.582759 kcal Electronic energy + Delta-G solvation = -30762.469674 eV Core-core repulsion = 26761.973912 eV Total energy + Delta-G solvation = -4000.495762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.21096 -40.93612 -39.38834 -37.48998 -35.53574 -34.14567 -34.12315 -33.91190 -32.77641 -31.05218 -29.80337 -28.83271 -28.04779 -26.04014 -24.79563 -23.80649 -23.11882 -22.70872 -21.61799 -21.34065 -20.55874 -19.91721 -18.90911 -18.03111 -17.74360 -17.33520 -17.00521 -16.69387 -16.24642 -16.06493 -15.35607 -15.24353 -15.14974 -15.06617 -14.91146 -14.70959 -14.50796 -14.46182 -14.37629 -14.03771 -13.84542 -13.55606 -13.34976 -13.08986 -13.00074 -12.89775 -12.62549 -12.60581 -12.32802 -12.07126 -12.05301 -11.98577 -11.94142 -11.85889 -11.69951 -11.50883 -11.41102 -10.86140 -10.67099 -10.62373 -10.36076 -9.93101 -9.09795 -8.82695 -8.16760 -5.50976 1.13859 1.29732 1.37244 1.46919 1.82646 1.93282 2.04772 2.42035 2.46253 3.08808 3.33153 3.38772 3.63840 3.70935 3.74490 3.81086 3.81406 3.99319 4.14515 4.21480 4.23780 4.26164 4.36450 4.42299 4.43557 4.46696 4.51620 4.56244 4.63214 4.69368 4.70414 4.84072 4.85009 4.87724 4.95481 4.97098 5.00034 5.03693 5.10368 5.10955 5.17328 5.22643 5.27411 5.42039 5.45949 5.66943 5.75393 5.86719 5.87938 6.18884 6.36586 6.73034 6.81160 7.30562 7.45396 7.55213 8.18657 9.03013 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.002170 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.280221 B =12898.350509 C =13440.890704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.155 3.845 4 H 0.064 0.936 5 C 0.151 3.849 6 H 0.074 0.926 7 N -0.708 5.708 8 C 0.513 3.487 9 O -0.573 6.573 10 C -0.044 4.044 11 C -0.021 4.021 12 C -0.043 4.043 13 N -0.457 5.457 14 C 0.185 3.815 15 N -0.514 5.514 16 C -0.036 4.036 17 C -0.120 4.120 18 C -0.129 4.129 19 C 0.095 3.905 20 C -0.127 4.127 21 C 0.112 3.888 22 N -0.613 5.613 23 C -0.202 4.202 24 H 0.066 0.934 25 C -0.022 4.022 26 N -0.951 5.951 27 Si 0.928 3.072 28 H -0.282 1.282 29 H -0.308 1.308 30 H -0.271 1.271 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.416 0.584 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.208 0.792 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.116 0.884 46 H 0.111 0.889 47 H 0.091 0.909 48 H 0.068 0.932 49 H 0.084 0.916 50 H 0.011 0.989 51 H 0.045 0.955 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.808 -7.978 -23.968 36.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C 0.049 3.951 4 H 0.081 0.919 5 C 0.044 3.956 6 H 0.092 0.908 7 N -0.361 5.361 8 C 0.301 3.699 9 O -0.451 6.451 10 C -0.084 4.084 11 C -0.150 4.150 12 C -0.177 4.177 13 N -0.139 5.139 14 C -0.078 4.078 15 N -0.233 5.233 16 C -0.075 4.075 17 C -0.158 4.158 18 C -0.166 4.166 19 C -0.026 4.026 20 C -0.166 4.166 21 C -0.013 4.013 22 N -0.339 5.339 23 C -0.331 4.331 24 H 0.083 0.917 25 C -0.217 4.217 26 N -0.597 5.597 27 Si 0.758 3.242 28 H -0.208 1.208 29 H -0.237 1.237 30 H -0.196 1.196 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.253 0.747 37 H 0.135 0.865 38 H 0.160 0.840 39 H 0.225 0.775 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.135 0.865 46 H 0.130 0.870 47 H 0.109 0.891 48 H 0.087 0.913 49 H 0.103 0.897 50 H 0.028 0.972 51 H 0.063 0.937 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 26.210 -7.901 -22.705 35.565 hybrid contribution -0.450 -0.560 0.759 1.045 sum 25.760 -8.461 -21.946 34.882 Atomic orbital electron populations 1.21784 0.95671 1.00176 1.02593 1.21825 0.96768 0.96892 1.00366 1.21440 0.90964 0.92455 0.90232 0.91870 1.21623 0.93273 0.97674 0.82988 0.90829 1.45833 1.15811 1.61487 1.12968 1.21145 0.80646 0.77266 0.90845 1.90706 1.56693 1.43397 1.54339 1.19946 0.90829 1.04454 0.93221 1.20406 0.95154 1.02813 0.96663 1.22732 0.85079 1.04599 1.05303 1.45578 1.08985 1.34704 1.24667 1.23769 0.97864 0.95465 0.90686 1.69875 0.99282 1.26415 1.27731 1.20303 0.85689 1.01206 1.00301 1.21672 1.01587 0.96810 0.95759 1.21914 0.94330 1.04176 0.96220 1.22330 0.88849 0.93790 0.97642 1.22995 0.97291 0.99447 0.96897 1.21909 0.87439 0.97265 0.94680 1.44879 1.00931 1.65361 1.22769 1.18314 0.84182 1.39371 0.91257 0.91660 1.25817 0.96870 1.00166 0.98862 1.69888 1.26554 1.47707 1.15516 0.86092 0.78688 0.80198 0.79174 1.20843 1.23684 1.19612 0.93124 0.92920 0.93092 0.90646 0.94804 0.74692 0.86506 0.83995 0.77495 0.88658 0.90320 0.87904 0.91973 0.90665 0.86542 0.87041 0.89106 0.91317 0.89706 0.97164 0.93665 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 9.03 71.98 0.65 -4.86 16 2 C -0.12 -4.32 5.49 30.59 0.17 -4.15 16 3 C 0.15 5.76 3.03 45.28 0.14 5.90 16 4 H 0.06 2.17 7.70 -2.38 -0.02 2.15 16 5 C 0.15 5.14 2.79 46.18 0.13 5.27 16 6 H 0.07 2.84 7.33 -2.39 -0.02 2.83 16 7 N -0.71 -18.50 5.19 -436.91 -2.27 -20.77 16 8 C 0.51 14.77 7.82 87.66 0.69 15.46 16 9 O -0.57 -22.70 15.25 -3.05 -0.05 -22.75 16 10 C -0.04 -0.87 6.26 29.10 0.18 -0.69 16 11 C -0.02 -0.53 5.87 41.41 0.24 -0.29 16 12 C -0.04 -0.80 11.53 83.22 0.96 0.16 16 13 N -0.46 -8.10 3.13 -513.81 -1.61 -9.71 16 14 C 0.19 4.41 7.65 138.24 1.06 5.47 16 15 N -0.51 -15.95 10.62 -175.67 -1.87 -17.81 16 16 C -0.04 -0.59 6.33 30.09 0.19 -0.40 16 17 C -0.12 -1.06 5.96 30.78 0.18 -0.87 16 18 C -0.13 -0.66 5.94 30.73 0.18 -0.48 16 19 C 0.09 0.74 6.98 86.48 0.60 1.35 16 20 C -0.13 -4.62 6.77 31.99 0.22 -4.40 16 21 C 0.11 4.98 4.98 86.86 0.43 5.41 16 22 N -0.61 -28.63 2.73 -667.55 -1.82 -30.45 16 23 C -0.20 -11.08 7.36 84.03 0.62 -10.46 16 24 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 25 C -0.02 -1.26 5.45 84.86 0.46 -0.80 16 26 N -0.95 -59.25 13.97 21.65 0.30 -58.95 16 27 Si 0.93 48.38 24.71 68.60 1.69 50.08 16 28 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 29 H -0.31 -16.24 7.11 99.48 0.71 -15.53 16 30 H -0.27 -13.93 6.77 99.48 0.67 -13.25 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 2.47 5.60 -2.39 -0.01 2.46 16 33 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.42 7.99 8.34 -92.71 -0.77 7.21 16 37 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.14 1.58 8.11 -2.39 -0.02 1.56 16 39 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.06 0.66 8.12 -2.39 -0.02 0.64 16 44 H 0.07 0.43 8.12 -2.39 -0.02 0.41 16 45 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 48 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 49 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 50 H 0.01 0.50 5.29 -2.39 -0.01 0.49 16 51 H 0.04 2.10 7.99 -2.39 -0.02 2.08 16 52 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -83.78 402.45 1.59 -82.18 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.11 Total: 16.55 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 7.10 Total: 11.62 kcal Atomic # 7 Polarization: -130.43 SS G_CDS: -7.26 Total: -137.69 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 1.69 Total: 50.08 kcal Total: -83.78 1.59 -82.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087581036.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.766 kcal (2) G-P(sol) polarization free energy of solvation -83.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds