Wall clock time and date at job start Wed Apr 1 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46860 * 2 1 4 4 H 1.08997 * 110.00007 * 305.07159 * 3 2 1 5 5 C 1.54336 * 109.99417 * 184.02984 * 3 2 1 6 6 H 1.09003 * 110.66439 * 337.05507 * 5 3 2 7 7 N 1.46491 * 110.84763 * 100.19632 * 5 3 2 8 8 C 1.34780 * 120.00473 * 200.14738 * 7 5 3 9 9 O 1.21575 * 119.99476 * 0.02562 * 8 7 5 10 10 C 1.47706 * 120.00554 * 180.02562 * 8 7 5 11 11 C 1.41506 * 126.51976 * 180.02562 * 10 8 7 12 12 C 1.35356 * 105.50138 * 179.97438 * 11 10 8 13 13 N 1.35026 * 107.23299 * 359.97438 * 12 11 10 14 14 C 1.46508 * 124.88743 * 180.02562 * 13 12 11 15 15 C 1.54263 * 110.02882 * 32.16730 * 14 13 12 16 16 C 1.54887 * 104.19677 * 217.10211 * 15 14 13 17 17 C 1.54887 * 102.74658 * 37.94594 * 16 15 14 18 18 C 1.53870 * 110.03353 * 275.00239 * 14 13 12 19 19 N 1.28472 * 110.23235 * 359.74796 * 13 12 11 20 20 C 1.55152 * 103.02173 * 218.67204 * 5 3 2 21 21 C 1.54906 * 101.58541 * 35.30619 * 20 5 3 22 22 N 1.47030 * 109.88246 * 66.16689 * 3 2 1 23 23 C 1.36939 * 125.64558 * 298.39483 * 22 3 2 24 24 H 1.08003 * 119.99761 * 330.48848 * 23 22 3 25 25 C 1.38815 * 119.99996 * 150.48563 * 23 22 3 26 26 N 1.31612 * 119.99855 * 170.81335 * 25 23 22 27 27 Si 1.86795 * 119.99881 * 351.08839 * 25 23 22 28 28 H 1.48494 * 109.47198 * 185.56065 * 27 25 23 29 29 H 1.48508 * 109.47407 * 305.56322 * 27 25 23 30 30 H 1.48504 * 109.47385 * 65.56084 * 27 25 23 31 31 H 1.09006 * 109.46511 * 172.54515 * 1 2 3 32 32 H 1.08995 * 109.47430 * 292.54493 * 1 2 3 33 33 H 1.08995 * 109.46916 * 52.54998 * 1 2 3 34 34 H 1.09005 * 109.47152 * 240.00634 * 2 1 3 35 35 H 1.08995 * 109.47014 * 120.00294 * 2 1 3 36 36 H 0.97004 * 120.00310 * 20.15849 * 7 5 3 37 37 H 1.07998 * 127.24301 * 359.95248 * 11 10 8 38 38 H 1.08006 * 126.38604 * 179.97438 * 12 11 10 39 39 H 1.09001 * 110.01631 * 153.60618 * 14 13 12 40 40 H 1.09002 * 110.48940 * 335.78532 * 15 14 13 41 41 H 1.09006 * 110.48593 * 98.42581 * 15 14 13 42 42 H 1.09004 * 110.75548 * 279.62775 * 16 15 14 43 43 H 1.08997 * 110.75781 * 156.25654 * 16 15 14 44 44 H 1.09003 * 110.48616 * 203.38267 * 17 16 15 45 45 H 1.08995 * 110.48825 * 80.73251 * 17 16 15 46 46 H 1.09004 * 110.03130 * 238.57005 * 18 14 13 47 47 H 1.09000 * 110.03184 * 359.97438 * 18 14 13 48 48 H 1.09004 * 111.00127 * 277.22794 * 20 5 3 49 49 H 1.09000 * 111.00369 * 153.38363 * 20 5 3 50 50 H 1.09000 * 110.36719 * 204.15529 * 21 20 5 51 51 H 1.08994 * 110.36651 * 81.82901 * 21 20 5 52 52 H 0.97001 * 120.00355 * 5.81450 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6094 1.9901 -0.8383 5 6 3.5799 1.4579 -0.1019 6 1 3.9979 0.5135 0.2467 7 7 4.0088 1.7369 -1.4746 8 6 5.2524 1.4036 -1.8731 9 8 6.0182 0.8709 -1.0934 10 6 5.6851 1.6854 -3.2569 11 6 6.9509 1.3955 -3.8190 12 6 6.8857 1.8284 -5.0998 13 7 5.6518 2.3444 -5.2854 14 6 5.1659 2.9240 -6.5401 15 6 5.8170 2.2067 -7.7406 16 6 6.0511 3.3348 -8.7758 17 6 6.4705 4.5323 -7.8874 18 6 5.5814 4.4026 -6.6334 19 7 4.9631 2.2486 -4.2051 20 6 3.9814 2.6190 0.8456 21 6 2.9177 2.4896 1.9643 22 7 1.6799 2.1002 1.2648 23 6 0.4058 2.3106 1.7203 24 1 -0.4039 2.4429 1.0178 25 6 0.1548 2.3539 3.0849 26 7 -1.0260 2.7334 3.5251 27 14 1.4955 1.8809 4.2965 28 1 0.9404 1.8805 5.6738 29 1 2.0043 0.5251 3.9675 30 1 2.6079 2.8611 4.2115 31 1 -0.3632 -1.0191 -0.1333 32 1 -0.3634 0.3940 0.9491 33 1 -0.3633 0.6249 -0.8158 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.3978 2.1617 -2.0968 37 1 7.7920 0.9278 -3.3290 38 1 7.6738 1.7717 -5.8362 39 1 4.0808 2.8368 -6.5958 40 1 6.7649 1.7555 -7.4471 41 1 5.1430 1.4516 -8.1452 42 1 5.1321 3.5588 -9.3175 43 1 6.8515 3.0665 -9.4653 44 1 6.2733 5.4744 -8.3990 45 1 7.5238 4.4567 -7.6176 46 1 4.6979 5.0330 -6.7352 47 1 6.1441 4.6891 -5.7450 48 1 3.9015 3.5813 0.3398 49 1 4.9857 2.4701 1.2422 50 1 2.7823 3.4450 2.4713 51 1 3.2092 1.7186 2.6774 52 1 -1.7465 2.9015 2.8977 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087590230.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:30 Heat of formation + Delta-G solvation = 60.093156 kcal Electronic energy + Delta-G solvation = -30870.508523 eV Core-core repulsion = 26871.986240 eV Total energy + Delta-G solvation = -3998.522283 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.92040 -39.60931 -38.56076 -37.75969 -34.13599 -32.76935 -32.46755 -32.09449 -30.96960 -29.43564 -29.25764 -28.18272 -27.02084 -24.41935 -23.22114 -22.58724 -22.01179 -21.24804 -20.71531 -20.30276 -19.92304 -19.18365 -18.08791 -17.41927 -17.04942 -16.43427 -16.07584 -15.65959 -15.16501 -14.96899 -14.54408 -14.36778 -14.20659 -13.83550 -13.61301 -13.42479 -13.23616 -13.07290 -12.97077 -12.69595 -12.38571 -12.21542 -12.03734 -11.82490 -11.79229 -11.67073 -11.45247 -11.38264 -11.23343 -11.21084 -11.04883 -10.79117 -10.46988 -10.25176 -10.06706 -9.97964 -9.89008 -9.43443 -9.42517 -9.21804 -8.98967 -8.71725 -8.45499 -7.00935 -6.20236 -3.32523 1.51618 2.00027 2.14863 3.32814 3.48023 3.51327 3.56645 3.68893 3.74483 3.85761 4.19522 4.39298 4.47948 4.62836 4.63496 4.71710 4.73844 4.80533 4.93139 5.01685 5.11781 5.23282 5.25617 5.27244 5.32240 5.38580 5.42433 5.42579 5.53657 5.54521 5.61419 5.65348 5.69253 5.86729 5.97025 6.02160 6.16107 6.21752 6.26416 6.41341 6.49417 6.57407 6.59654 6.67054 6.68167 6.81506 6.83847 7.09754 7.36987 7.59812 7.87103 7.91484 8.37769 8.39765 9.05650 9.56609 10.30782 11.19375 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.002303 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.025650 B =12152.872263 C =12557.218874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.041 0.959 5 C 0.134 3.866 6 H 0.096 0.904 7 N -0.702 5.702 8 C 0.603 3.397 9 O -0.536 6.536 10 C -0.013 4.013 11 C -0.178 4.178 12 C -0.022 4.022 13 N -0.275 5.275 14 C 0.143 3.857 15 C -0.136 4.136 16 C -0.122 4.122 17 C -0.125 4.125 18 C -0.136 4.136 19 N -0.260 5.260 20 C -0.140 4.140 21 C 0.112 3.888 22 N -0.601 5.601 23 C -0.310 4.310 24 H 0.072 0.928 25 C -0.016 4.016 26 N -0.927 5.927 27 Si 1.066 2.934 28 H -0.300 1.300 29 H -0.291 1.291 30 H -0.285 1.285 31 H 0.030 0.970 32 H 0.092 0.908 33 H 0.037 0.963 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.405 0.595 37 H 0.161 0.839 38 H 0.179 0.821 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.026 0.974 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.692 0.710 -26.345 31.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.050 3.950 4 H 0.059 0.941 5 C 0.029 3.971 6 H 0.114 0.886 7 N -0.352 5.352 8 C 0.387 3.613 9 O -0.411 6.411 10 C -0.174 4.174 11 C -0.206 4.206 12 C -0.164 4.164 13 N -0.064 5.064 14 C 0.042 3.958 15 C -0.175 4.175 16 C -0.160 4.160 17 C -0.163 4.163 18 C -0.175 4.175 19 N -0.095 5.095 20 C -0.180 4.180 21 C -0.014 4.014 22 N -0.328 5.328 23 C -0.438 4.438 24 H 0.090 0.910 25 C -0.216 4.216 26 N -0.567 5.567 27 Si 0.898 3.102 28 H -0.228 1.228 29 H -0.218 1.218 30 H -0.212 1.212 31 H 0.049 0.951 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.240 0.760 37 H 0.179 0.821 38 H 0.196 0.804 39 H 0.130 0.870 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.044 0.956 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.373 0.770 -24.428 29.418 hybrid contribution 0.123 -0.114 -1.910 1.917 sum 16.496 0.656 -26.338 31.084 Atomic orbital electron populations 1.21899 0.95540 0.98994 1.04278 1.21872 0.97116 0.97331 0.99905 1.21203 0.89735 0.92576 0.91531 0.94126 1.22144 0.95670 0.99147 0.80142 0.88623 1.45894 1.13969 1.61421 1.13951 1.16884 0.81975 0.78245 0.84228 1.90784 1.53373 1.43487 1.53466 1.22032 0.94245 1.06413 0.94685 1.21766 0.98711 1.06641 0.93521 1.22676 0.90530 1.04244 0.98971 1.45710 1.09166 1.42155 1.09354 1.22349 1.01080 0.93515 0.78880 1.22844 1.01978 0.98654 0.93987 1.22487 1.02189 0.94206 0.97110 1.22388 0.99713 0.98952 0.95203 1.22600 1.01217 0.94010 0.99668 1.73532 1.23809 1.18854 0.93337 1.23147 0.99109 0.98241 0.97499 1.22161 0.86581 0.98531 0.94080 1.44742 1.01770 1.66085 1.20154 1.19965 0.83430 1.47888 0.92496 0.90992 1.26145 1.01467 0.97879 0.96151 1.70926 1.02563 1.45996 1.37206 0.83839 0.74244 0.76721 0.75382 1.22817 1.21813 1.21172 0.95111 0.88897 0.94346 0.93991 0.92384 0.76008 0.82107 0.80437 0.86967 0.89822 0.89914 0.90654 0.90506 0.90756 0.91144 0.89801 0.90483 0.91146 0.91145 0.91830 0.95635 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.08 37.16 0.34 -2.67 16 2 C -0.12 -2.39 5.47 -26.73 -0.15 -2.54 16 3 C 0.16 3.16 3.00 -66.94 -0.20 2.96 16 4 H 0.04 0.82 7.69 -51.93 -0.40 0.42 16 5 C 0.13 2.43 2.76 -66.10 -0.18 2.25 16 6 H 0.10 1.83 7.40 -51.93 -0.38 1.45 16 7 N -0.70 -11.27 5.20 -53.01 -0.28 -11.55 16 8 C 0.60 9.98 7.82 -12.39 -0.10 9.88 16 9 O -0.54 -10.31 16.65 5.30 0.09 -10.22 16 10 C -0.01 -0.19 7.13 -82.77 -0.59 -0.78 16 11 C -0.18 -2.08 10.81 -39.37 -0.43 -2.50 16 12 C -0.02 -0.19 10.39 -17.17 -0.18 -0.37 16 13 N -0.28 -2.65 3.14 -53.74 -0.17 -2.82 16 14 C 0.14 0.91 3.88 -66.81 -0.26 0.65 16 15 C -0.14 -0.56 6.35 -25.07 -0.16 -0.71 16 16 C -0.12 -0.36 6.91 -24.74 -0.17 -0.53 16 17 C -0.12 -0.46 6.83 -25.07 -0.17 -0.63 16 18 C -0.14 -0.76 6.60 -25.61 -0.17 -0.92 16 19 N -0.26 -3.32 11.67 33.42 0.39 -2.93 16 20 C -0.14 -2.62 6.77 -24.59 -0.17 -2.79 16 21 C 0.11 2.46 4.51 -2.53 -0.01 2.45 16 22 N -0.60 -14.30 2.86 -162.57 -0.46 -14.77 16 23 C -0.31 -8.46 7.62 -15.06 -0.11 -8.58 16 24 H 0.07 2.09 7.53 -52.48 -0.40 1.70 16 25 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 26 N -0.93 -28.57 13.70 55.49 0.76 -27.81 16 27 Si 1.07 26.80 24.73 -169.99 -4.20 22.60 16 28 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 29 H -0.29 -7.13 7.07 56.52 0.40 -6.73 16 30 H -0.28 -6.61 5.59 56.52 0.32 -6.30 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 2.21 5.51 -51.93 -0.29 1.92 16 33 H 0.04 0.74 8.13 -51.93 -0.42 0.31 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.40 5.99 8.04 -40.82 -0.33 5.66 16 37 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.18 0.89 6.80 -52.48 -0.36 0.54 16 39 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.32 5.83 -51.93 -0.30 0.01 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 43 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 48 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 50 H 0.06 1.46 6.68 -51.93 -0.35 1.11 16 51 H 0.03 0.58 5.44 -51.93 -0.28 0.30 16 52 H 0.26 7.97 8.73 -40.82 -0.36 7.62 16 LS Contribution 400.60 15.07 6.04 6.04 Total: -1.00 -33.22 400.60 -9.29 -42.51 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.65 Total: 4.33 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.80 Total: -5.39 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.24 Total: -59.87 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -4.20 Total: 22.60 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.22 -9.29 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087590230.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.606 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds