Wall clock time and date at job start Wed Apr 1 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47045 * 2 1 4 4 H 1.08996 * 109.99905 * 313.81066 * 3 2 1 5 5 C 1.54336 * 109.98912 * 192.77508 * 3 2 1 6 6 H 1.08996 * 110.66844 * 337.04705 * 5 3 2 7 7 N 1.46504 * 110.84928 * 100.19866 * 5 3 2 8 8 C 1.34774 * 119.99859 * 200.14530 * 7 5 3 9 9 O 1.21631 * 120.00101 * 354.89480 * 8 7 5 10 10 C 1.47168 * 120.00078 * 174.88915 * 8 7 5 11 11 C 1.38404 * 126.88056 * 5.08291 * 10 8 7 12 12 C 1.39669 * 105.35782 * 179.91612 * 11 10 8 13 13 C 1.50704 * 126.06858 * 180.10658 * 12 11 10 14 14 C 1.52996 * 117.49930 * 344.01374 * 13 12 11 15 15 C 1.53004 * 117.49700 * 275.34994 * 13 12 11 16 16 N 1.30862 * 107.86117 * 0.35564 * 12 11 10 17 17 N 1.28437 * 110.92798 * 359.77031 * 16 12 11 18 18 C 1.46504 * 125.19213 * 180.02562 * 17 16 12 19 19 C 1.53002 * 109.46860 * 268.67217 * 18 17 16 20 20 C 1.55160 * 103.02284 * 218.66646 * 5 3 2 21 21 C 1.54908 * 101.57715 * 35.30662 * 20 5 3 22 22 N 1.47024 * 109.88471 * 74.91280 * 3 2 1 23 23 C 1.36935 * 125.64074 * 298.38998 * 22 3 2 24 24 H 1.07996 * 120.00351 * 45.73049 * 23 22 3 25 25 C 1.38810 * 119.99735 * 225.72213 * 23 22 3 26 26 N 1.31622 * 120.00169 * 193.28240 * 25 23 22 27 27 Si 1.86801 * 120.00069 * 13.28314 * 25 23 22 28 28 H 1.48492 * 109.47201 * 267.19556 * 27 25 23 29 29 H 1.48500 * 109.46967 * 27.19951 * 27 25 23 30 30 H 1.48508 * 109.46883 * 147.19630 * 27 25 23 31 31 H 1.09005 * 109.46906 * 288.97275 * 1 2 3 32 32 H 1.08999 * 109.47075 * 48.96993 * 1 2 3 33 33 H 1.08995 * 109.46949 * 168.97343 * 1 2 3 34 34 H 1.09004 * 109.46704 * 239.99961 * 2 1 3 35 35 H 1.09004 * 109.47050 * 120.00152 * 2 1 3 36 36 H 0.96995 * 120.00070 * 20.14335 * 7 5 3 37 37 H 1.08005 * 127.32033 * 359.97438 * 11 10 8 38 38 H 1.09002 * 115.54753 * 129.68266 * 13 12 11 39 39 H 1.08999 * 117.49879 * 359.97438 * 14 13 12 40 40 H 1.08995 * 117.49761 * 145.02201 * 14 13 12 41 41 H 1.09002 * 117.49645 * 214.97694 * 15 13 12 42 42 H 1.08991 * 117.49861 * 0.02562 * 15 13 12 43 43 H 1.08995 * 109.47089 * 28.66934 * 18 17 16 44 44 H 1.08996 * 109.47283 * 148.67127 * 18 17 16 45 45 H 1.09006 * 109.46874 * 179.97438 * 19 18 17 46 46 H 1.08997 * 109.47476 * 299.99465 * 19 18 17 47 47 H 1.08996 * 109.47247 * 59.99887 * 19 18 17 48 48 H 1.09001 * 111.00393 * 277.23421 * 20 5 3 49 49 H 1.08992 * 111.00408 * 153.38269 * 20 5 3 50 50 H 1.09003 * 110.36292 * 204.15491 * 21 20 5 51 51 H 1.08997 * 110.46150 * 81.88190 * 21 20 5 52 52 H 0.97001 * 120.00057 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.4958 2.0302 -0.7391 5 6 3.5495 1.4684 -0.3207 6 1 4.0097 0.5092 -0.0838 7 7 3.7783 1.8182 -1.7249 8 6 4.9507 1.5099 -2.3137 9 8 5.8525 1.0258 -1.6566 10 6 5.1398 1.7588 -3.7518 11 6 4.2543 2.3882 -4.6093 12 6 4.8813 2.3834 -5.8573 13 6 4.3222 2.9580 -7.1334 14 6 2.8241 3.2661 -7.1726 15 6 3.3812 2.0733 -7.9538 16 7 6.0382 1.7867 -5.7230 17 7 6.2217 1.4098 -4.5090 18 6 7.4104 0.7123 -4.0120 19 6 7.1924 -0.7991 -4.1085 20 6 4.0871 2.5816 0.6170 21 6 3.1942 2.3919 1.8685 22 7 1.8674 2.0339 1.3349 23 6 0.6725 2.2164 1.9784 24 1 -0.0569 1.4202 1.9990 25 6 0.3988 3.4248 2.6042 26 7 -0.6169 3.5200 3.4358 27 14 1.4720 4.9159 2.2661 28 1 2.5536 4.9877 3.2810 29 1 2.0706 4.7982 0.9122 30 1 0.6448 6.1473 2.3362 31 1 -0.3633 0.3341 0.9719 32 1 -0.3633 0.6746 -0.7752 33 1 -0.3633 -1.0087 -0.1965 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.0859 2.2716 -2.2307 37 1 3.2849 2.7971 -4.3651 38 1 4.9879 3.6266 -7.6793 39 1 2.2428 3.0528 -6.2755 40 1 2.5042 4.1371 -7.7445 41 1 3.4276 2.1602 -9.0393 42 1 3.1663 1.0760 -7.5703 43 1 8.2748 0.9938 -4.6133 44 1 7.5856 0.9885 -2.9723 45 1 8.0770 -1.3180 -3.7392 46 1 6.3281 -1.0807 -3.5072 47 1 7.0173 -1.0752 -5.1483 48 1 3.9391 3.5680 0.1773 49 1 5.1372 2.4164 0.8575 50 1 3.1364 3.3199 2.4374 51 1 3.5811 1.5876 2.4943 52 1 -0.8084 4.3646 3.8729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087616892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:51 Heat of formation + Delta-G solvation = 88.940096 kcal Electronic energy + Delta-G solvation = -31405.384070 eV Core-core repulsion = 27408.112684 eV Total energy + Delta-G solvation = -3997.271386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.76728 -39.73389 -37.98493 -37.44066 -34.74971 -34.00181 -32.63027 -32.30317 -31.09412 -29.88003 -29.22605 -27.16731 -24.91171 -24.57208 -23.61770 -22.54401 -22.45398 -21.98805 -20.93164 -20.35372 -20.03059 -19.12326 -17.85142 -16.99494 -16.64885 -16.28234 -16.17681 -15.63745 -15.00225 -14.85959 -14.61992 -14.39478 -14.35504 -14.10297 -14.00508 -13.46590 -12.92857 -12.84778 -12.68363 -12.45616 -12.39284 -12.27022 -12.16857 -11.97669 -11.76399 -11.53951 -11.51254 -11.27119 -11.23144 -10.96485 -10.88437 -10.83365 -10.53518 -10.47444 -10.35725 -10.09597 -10.01868 -9.90235 -9.42628 -9.30613 -9.00145 -8.86306 -8.56213 -6.68491 -6.03148 -3.61181 1.13369 2.16834 2.29702 3.11876 3.14655 3.28781 3.41528 3.46855 3.57878 4.10393 4.43502 4.47067 4.55755 4.64087 4.71323 4.74029 4.92843 4.98392 5.03252 5.03925 5.09631 5.15967 5.25724 5.36352 5.37991 5.38998 5.46584 5.51947 5.62828 5.64656 5.78601 5.80506 5.85889 5.87011 5.88652 5.90201 6.02565 6.13790 6.25878 6.30013 6.36309 6.46903 6.53920 6.57282 6.59945 6.68809 6.80425 6.98753 7.05241 7.43704 7.90873 7.97387 8.09635 8.37212 8.82025 9.59525 10.21677 11.09324 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.003023 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.521512 B = 9261.338543 C = 9978.922107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.155 3.845 4 H 0.046 0.954 5 C 0.138 3.862 6 H 0.097 0.903 7 N -0.698 5.698 8 C 0.590 3.410 9 O -0.541 6.541 10 C -0.031 4.031 11 C -0.183 4.183 12 C 0.053 3.947 13 C -0.073 4.073 14 C -0.166 4.166 15 C -0.167 4.167 16 N -0.272 5.272 17 N -0.253 5.253 18 C 0.112 3.888 19 C -0.163 4.163 20 C -0.146 4.146 21 C 0.119 3.881 22 N -0.598 5.598 23 C -0.253 4.253 24 H 0.092 0.908 25 C 0.041 3.959 26 N -0.903 5.903 27 Si 0.888 3.112 28 H -0.286 1.286 29 H -0.267 1.267 30 H -0.302 1.302 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.403 0.597 37 H 0.159 0.841 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.046 0.954 51 H 0.034 0.966 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.567 -4.051 -19.757 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C 0.048 3.952 4 H 0.064 0.936 5 C 0.034 3.966 6 H 0.115 0.885 7 N -0.348 5.348 8 C 0.375 3.625 9 O -0.419 6.419 10 C -0.159 4.159 11 C -0.212 4.212 12 C -0.103 4.103 13 C -0.093 4.093 14 C -0.204 4.204 15 C -0.205 4.205 16 N -0.104 5.104 17 N -0.041 5.041 18 C -0.007 4.007 19 C -0.221 4.221 20 C -0.185 4.185 21 C -0.006 4.006 22 N -0.325 5.325 23 C -0.381 4.381 24 H 0.109 0.891 25 C -0.161 4.161 26 N -0.543 5.543 27 Si 0.718 3.282 28 H -0.213 1.213 29 H -0.192 1.192 30 H -0.230 1.230 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.238 0.762 37 H 0.177 0.823 38 H 0.135 0.865 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.137 0.863 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.064 0.936 51 H 0.052 0.948 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.111 -4.708 -19.618 24.060 hybrid contribution -0.431 1.458 0.134 1.527 sum 12.679 -3.249 -19.483 23.472 Atomic orbital electron populations 1.21943 0.95552 0.99281 1.04094 1.21909 0.96880 0.97302 1.00208 1.21278 0.90229 0.93676 0.90017 0.93640 1.22160 0.97539 0.98769 0.78165 0.88516 1.45759 1.16138 1.59705 1.13238 1.16875 0.83050 0.78335 0.84194 1.90766 1.40862 1.45348 1.64899 1.21436 0.91706 1.08581 0.94206 1.22065 1.01228 1.05707 0.92209 1.20955 0.92019 1.02506 0.94825 1.20010 0.92666 1.02821 0.93757 1.23030 0.94439 0.99900 1.03006 1.23001 1.02951 0.96123 0.98426 1.73058 1.20338 1.15867 1.01165 1.45780 1.14524 1.39677 1.04077 1.22212 0.83621 0.92694 1.02222 1.22080 1.03696 0.93552 1.02769 1.23198 0.99475 0.98600 0.97236 1.21900 0.86465 0.98436 0.93798 1.44493 1.01656 1.73710 1.12615 1.18694 0.92684 0.97407 1.29304 0.89129 1.25702 0.95598 0.97491 0.97267 1.69777 1.29810 1.26218 1.28521 0.86694 0.79542 0.82732 0.79203 1.21325 1.19174 1.22970 0.89809 0.93592 0.94771 0.93777 0.92020 0.76185 0.82299 0.86507 0.88181 0.88065 0.88347 0.88683 0.88473 0.86347 0.90041 0.91553 0.91983 0.91299 0.91025 0.93634 0.94833 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.46 37.16 0.35 -2.30 16 2 C -0.12 -2.10 5.39 -26.73 -0.14 -2.24 16 3 C 0.15 2.83 2.94 -66.95 -0.20 2.63 16 4 H 0.05 0.84 7.50 -51.93 -0.39 0.45 16 5 C 0.14 2.23 2.69 -66.08 -0.18 2.05 16 6 H 0.10 1.60 7.48 -51.93 -0.39 1.21 16 7 N -0.70 -9.63 5.19 -53.17 -0.28 -9.91 16 8 C 0.59 8.42 7.79 -12.64 -0.10 8.33 16 9 O -0.54 -8.75 14.48 5.25 0.08 -8.68 16 10 C -0.03 -0.40 6.96 -82.06 -0.57 -0.97 16 11 C -0.18 -2.11 9.79 -38.99 -0.38 -2.49 16 12 C 0.05 0.62 6.86 -82.47 -0.57 0.05 16 13 C -0.07 -0.66 6.33 -91.77 -0.58 -1.24 16 14 C -0.17 -1.22 10.03 -26.69 -0.27 -1.48 16 15 C -0.17 -1.28 10.24 -26.69 -0.27 -1.55 16 16 N -0.27 -3.50 11.90 33.64 0.40 -3.10 16 17 N -0.25 -3.18 3.35 -57.14 -0.19 -3.37 16 18 C 0.11 1.14 6.54 -4.04 -0.03 1.12 16 19 C -0.16 -1.48 10.24 37.16 0.38 -1.10 16 20 C -0.15 -2.56 6.77 -24.58 -0.17 -2.73 16 21 C 0.12 2.46 6.25 -2.53 -0.02 2.44 16 22 N -0.60 -13.36 2.49 -162.58 -0.40 -13.77 16 23 C -0.25 -6.66 9.61 -15.06 -0.14 -6.80 16 24 H 0.09 2.52 5.17 -52.49 -0.27 2.25 16 25 C 0.04 1.14 5.48 -17.43 -0.10 1.04 16 26 N -0.90 -26.64 13.97 55.49 0.78 -25.87 16 27 Si 0.89 21.79 25.07 -169.99 -4.26 17.52 16 28 H -0.29 -6.95 6.82 56.52 0.39 -6.57 16 29 H -0.27 -6.32 6.94 56.52 0.39 -5.93 16 30 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 31 H 0.08 1.73 4.97 -51.93 -0.26 1.47 16 32 H 0.04 0.78 7.97 -51.93 -0.41 0.36 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 4.82 7.35 -40.82 -0.30 4.52 16 37 H 0.16 1.47 7.00 -52.48 -0.37 1.10 16 38 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 0.73 7.21 -51.93 -0.37 0.36 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.12 1.31 6.28 -51.93 -0.33 0.98 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.07 1.25 7.97 -51.93 -0.41 0.84 16 49 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 50 H 0.05 1.02 4.07 -51.93 -0.21 0.81 16 51 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 407.75 15.07 6.14 6.14 Total: -1.00 -31.10 407.75 -9.08 -40.18 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.37 Total: 6.09 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.97 Total: -5.24 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.30 Total: -56.02 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.26 Total: 17.52 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.10 -9.08 -40.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087616892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.118 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds