Wall clock time and date at job start Wed Apr 1 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47014 * 2 1 4 4 H 1.08998 * 110.00106 * 54.12804 * 3 2 1 5 5 C 1.54322 * 109.88323 * 293.02344 * 3 2 1 6 6 H 1.09003 * 110.72253 * 336.76115 * 5 3 2 7 7 N 1.46507 * 110.71579 * 100.03125 * 5 3 2 8 8 C 1.34779 * 119.99949 * 199.97545 * 7 5 3 9 9 O 1.21282 * 119.99892 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00194 * 180.02562 * 8 7 5 11 11 H 1.08994 * 109.51140 * 59.90354 * 10 8 7 12 12 C 1.53146 * 109.51068 * 180.02562 * 10 8 7 13 13 C 1.53258 * 109.49543 * 189.41473 * 12 10 8 14 14 N 1.46473 * 108.79502 * 309.61886 * 13 12 10 15 15 C 1.36314 * 127.77668 * 197.15397 * 14 13 12 16 16 C 1.34854 * 106.68648 * 179.91441 * 15 14 13 17 17 C 1.50707 * 125.96187 * 179.97438 * 16 15 14 18 18 N 1.34287 * 108.07401 * 0.02562 * 16 15 14 19 19 C 1.30093 * 109.20951 * 0.02562 * 18 16 15 20 20 C 1.51048 * 127.38748 * 179.89934 * 19 18 16 21 21 C 1.55158 * 102.94497 * 218.39290 * 5 3 2 22 22 C 1.54911 * 101.57977 * 35.50566 * 21 5 3 23 23 N 1.47025 * 109.88238 * 175.22130 * 3 2 1 24 24 C 1.36938 * 125.64564 * 298.32338 * 23 3 2 25 25 H 1.08001 * 120.00071 * 347.94913 * 24 23 3 26 26 C 1.38807 * 120.00033 * 167.94268 * 24 23 3 27 27 N 1.31619 * 120.00234 * 0.02562 * 26 24 23 28 28 Si 1.86801 * 120.00197 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.46659 * 60.00663 * 28 26 24 30 30 H 1.48500 * 109.47419 * 179.97438 * 28 26 24 31 31 H 1.48492 * 109.47385 * 300.00736 * 28 26 24 32 32 H 1.08998 * 109.47031 * 65.44920 * 1 2 3 33 33 H 1.08995 * 109.47269 * 185.45350 * 1 2 3 34 34 H 1.09000 * 109.46765 * 305.45509 * 1 2 3 35 35 H 1.08993 * 109.46788 * 239.99730 * 2 1 3 36 36 H 1.09002 * 109.46530 * 119.99760 * 2 1 3 37 37 H 0.96994 * 120.00293 * 19.97965 * 7 5 3 38 38 H 1.09005 * 109.46505 * 309.41727 * 12 10 8 39 39 H 1.08998 * 109.47425 * 69.40348 * 12 10 8 40 40 H 1.09004 * 109.58565 * 69.40842 * 13 12 10 41 41 H 1.08999 * 109.58489 * 189.82344 * 13 12 10 42 42 H 1.07995 * 126.65589 * 359.90912 * 15 14 13 43 43 H 1.08994 * 109.47381 * 89.99938 * 17 16 15 44 44 H 1.09009 * 109.46744 * 209.99919 * 17 16 15 45 45 H 1.09002 * 109.47047 * 329.99742 * 17 16 15 46 46 H 1.09004 * 109.70988 * 76.31257 * 20 19 18 47 47 H 1.08991 * 109.71712 * 315.67344 * 20 19 18 48 48 H 1.08998 * 111.00141 * 277.43067 * 21 5 3 49 49 H 1.09002 * 111.00010 * 153.57802 * 21 5 3 50 50 H 1.08991 * 110.36556 * 81.82872 * 22 21 5 51 51 H 1.09000 * 110.36141 * 204.15019 * 22 21 5 52 52 H 0.97004 * 120.00328 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5984 1.9940 0.8300 5 6 1.6798 2.1265 -1.3356 6 1 1.5278 1.3850 -2.1200 7 7 0.4928 2.9712 -1.1817 8 6 -0.2234 3.3310 -2.2653 9 8 0.1145 2.9551 -3.3677 10 6 -1.4442 4.2003 -2.1070 11 1 -1.1591 5.1488 -1.6520 12 6 -2.0694 4.4590 -3.4809 13 6 -3.1628 5.5253 -3.3527 14 7 -4.0630 5.1492 -2.2602 15 6 -5.3181 5.6200 -2.0128 16 6 -5.7580 4.9869 -0.9063 17 6 -7.0997 5.1833 -0.2488 18 7 -4.7915 4.1517 -0.4922 19 6 -3.7730 4.2433 -1.2964 20 6 -2.4668 3.4895 -1.2117 21 6 2.9337 2.9907 -1.6328 22 6 4.0696 2.0873 -1.0911 23 7 3.5057 1.4546 0.1152 24 6 4.2275 0.9607 1.1688 25 1 3.7275 0.6944 2.0884 26 6 5.6018 0.8022 1.0551 27 7 6.2113 1.1271 -0.0654 28 14 6.5866 0.1291 2.4926 29 1 6.0960 -1.2300 2.8355 30 1 8.0220 0.0567 2.1188 31 1 6.4247 1.0245 3.6661 32 1 -0.3633 0.4270 -0.9347 33 1 -0.3633 -1.0230 0.0977 34 1 -0.3633 0.5961 0.8371 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 0.2223 3.2716 -0.3000 38 1 -1.3005 4.8082 -4.1700 39 1 -2.5057 3.5354 -3.8613 40 1 -2.7072 6.4913 -3.1345 41 1 -3.7247 5.5863 -4.2846 42 1 -5.8557 6.3571 -2.5906 43 1 -7.8191 4.4841 -0.6749 44 1 -7.0091 5.0036 0.8226 45 1 -7.4414 6.2044 -0.4182 46 1 -2.6099 2.4660 -1.5583 47 1 -2.1121 3.4831 -0.1811 48 1 2.8942 3.9357 -1.0911 49 1 3.0464 3.1603 -2.7036 50 1 4.3354 1.3294 -1.8279 51 1 4.9413 2.6882 -0.8322 52 1 7.1717 1.0166 -0.1448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087623905.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:06 Heat of formation + Delta-G solvation = 34.191131 kcal Electronic energy + Delta-G solvation = -31215.780895 eV Core-core repulsion = 27216.135415 eV Total energy + Delta-G solvation = -3999.645479 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.60292 -40.07368 -38.01134 -36.45634 -34.18845 -33.56300 -32.75285 -31.79277 -31.66960 -29.42106 -28.85603 -27.55734 -26.48935 -24.67898 -24.25482 -23.20609 -22.02974 -20.82285 -20.38832 -20.16884 -19.51753 -19.27455 -17.18844 -17.03078 -16.84073 -16.23176 -15.80069 -15.34724 -14.81645 -14.57979 -14.41904 -14.12866 -14.10692 -13.94041 -13.89945 -13.68225 -13.28039 -13.18575 -12.77712 -12.72727 -12.53045 -12.12392 -12.06769 -11.96965 -11.89732 -11.67340 -11.55769 -11.42942 -11.15161 -10.89822 -10.84608 -10.62782 -10.46450 -10.30739 -10.13102 -10.12205 -9.81522 -9.73561 -9.65969 -9.62165 -8.70748 -8.59703 -8.41389 -6.84850 -5.75740 -3.12388 1.79277 2.49535 2.61460 2.86576 3.16795 3.38577 3.43449 3.44178 3.91827 4.13943 4.24450 4.28545 4.47261 4.65168 4.75321 4.78215 4.84755 4.99310 5.05559 5.11525 5.26561 5.33683 5.35942 5.40278 5.48595 5.48787 5.53227 5.54190 5.65869 5.73235 5.74692 5.78298 5.80733 5.84146 6.04035 6.09064 6.21158 6.26344 6.39306 6.45043 6.53919 6.57104 6.64873 6.70481 6.92568 6.92782 7.11183 7.50304 7.56741 7.64288 7.77604 7.91455 8.24118 8.30009 9.16567 9.77627 10.44180 11.35184 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.002314 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.131647 B =12096.392778 C =12848.987087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.036 0.964 5 C 0.138 3.862 6 H 0.092 0.908 7 N -0.710 5.710 8 C 0.520 3.480 9 O -0.538 6.538 10 C -0.113 4.113 11 H 0.104 0.896 12 C -0.115 4.115 13 C 0.103 3.897 14 N -0.455 5.455 15 C -0.056 4.056 16 C -0.005 4.005 17 C -0.065 4.065 18 N -0.484 5.484 19 C 0.215 3.785 20 C -0.024 4.024 21 C -0.156 4.156 22 C 0.172 3.828 23 N -0.594 5.594 24 C -0.227 4.227 25 H 0.076 0.924 26 C -0.005 4.005 27 N -0.918 5.918 28 Si 0.911 3.089 29 H -0.284 1.284 30 H -0.290 1.290 31 H -0.285 1.285 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.173 0.827 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.025 0.975 51 H 0.079 0.921 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.025 10.497 -5.836 25.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.034 3.966 6 H 0.110 0.890 7 N -0.360 5.360 8 C 0.305 3.695 9 O -0.415 6.415 10 C -0.135 4.135 11 H 0.122 0.878 12 C -0.153 4.153 13 C -0.019 4.019 14 N -0.139 5.139 15 C -0.189 4.189 16 C -0.135 4.135 17 C -0.123 4.123 18 N -0.203 5.203 19 C -0.048 4.048 20 C -0.063 4.063 21 C -0.195 4.195 22 C 0.047 3.953 23 N -0.319 5.319 24 C -0.355 4.355 25 H 0.093 0.907 26 C -0.202 4.202 27 N -0.565 5.565 28 Si 0.741 3.259 29 H -0.211 1.211 30 H -0.216 1.216 31 H -0.211 1.211 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.233 0.767 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.190 0.810 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.114 0.886 47 H 0.120 0.880 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.043 0.957 51 H 0.097 0.903 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.471 9.723 -6.033 24.329 hybrid contribution 0.465 0.350 0.371 0.690 sum -21.006 10.073 -5.662 23.974 Atomic orbital electron populations 1.21773 0.97161 1.00646 1.00894 1.22022 0.93658 0.99114 1.02404 1.21072 0.87236 0.93438 0.92973 0.94667 1.22132 0.83302 0.92372 0.98828 0.88971 1.46104 1.28575 1.51996 1.09315 1.20121 0.83789 0.80740 0.84820 1.90715 1.70335 1.55157 1.25277 1.21448 0.94043 1.00298 0.97714 0.87822 1.21720 0.97378 0.99451 0.96750 1.22066 0.91160 0.99512 0.89123 1.45385 1.13447 1.32269 1.22760 1.22287 0.87316 1.06565 1.02737 1.20807 0.97485 0.98668 0.96498 1.19999 0.90447 1.01374 1.00464 1.69958 1.00288 1.22760 1.27320 1.23074 0.97785 0.95407 0.88519 1.20132 0.86452 0.98156 1.01560 1.23422 0.96709 0.99079 1.00338 1.21488 0.93236 0.93158 0.87437 1.44449 0.98467 1.69212 1.19760 1.18905 0.89350 1.36093 0.91181 0.90669 1.24872 0.96900 1.01149 0.97231 1.69911 1.08931 1.52861 1.24781 0.86220 0.79184 0.78995 0.81471 1.21097 1.21619 1.21135 0.93392 0.93642 0.93289 0.92460 0.91650 0.76720 0.87934 0.89883 0.89492 0.88795 0.81001 0.91593 0.91221 0.91519 0.88571 0.87979 0.92090 0.91926 0.95673 0.90265 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.64 37.16 0.36 -1.72 16 2 C -0.13 -2.38 5.43 -26.73 -0.15 -2.52 16 3 C 0.16 3.06 2.92 -66.95 -0.20 2.87 16 4 H 0.04 0.66 7.69 -51.93 -0.40 0.26 16 5 C 0.14 2.34 2.00 -66.09 -0.13 2.20 16 6 H 0.09 1.71 7.33 -51.93 -0.38 1.33 16 7 N -0.71 -9.18 4.89 -52.03 -0.25 -9.44 16 8 C 0.52 6.54 7.13 -10.99 -0.08 6.46 16 9 O -0.54 -8.75 15.56 5.56 0.09 -8.67 16 10 C -0.11 -1.01 2.55 -91.50 -0.23 -1.25 16 11 H 0.10 0.80 8.12 -51.93 -0.42 0.38 16 12 C -0.12 -0.92 4.67 -26.52 -0.12 -1.04 16 13 C 0.10 0.66 6.98 -3.92 -0.03 0.63 16 14 N -0.46 -4.23 3.13 -113.76 -0.36 -4.58 16 15 C -0.06 -0.51 11.55 -16.76 -0.19 -0.70 16 16 C -0.01 -0.06 7.10 -82.72 -0.59 -0.65 16 17 C -0.06 -0.51 10.42 36.01 0.38 -0.13 16 18 N -0.48 -6.34 11.24 -6.88 -0.08 -6.42 16 19 C 0.21 2.40 7.65 -155.24 -1.19 1.22 16 20 C -0.02 -0.22 5.47 -27.51 -0.15 -0.37 16 21 C -0.16 -2.93 6.77 -24.58 -0.17 -3.09 16 22 C 0.17 4.06 5.46 -2.53 -0.01 4.05 16 23 N -0.59 -14.33 3.13 -162.58 -0.51 -14.84 16 24 C -0.23 -6.04 9.73 -15.06 -0.15 -6.19 16 25 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 26 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 27 N -0.92 -26.32 10.48 55.49 0.58 -25.74 16 28 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 31 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 32 H 0.05 0.66 7.46 -51.93 -0.39 0.27 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.10 8.03 -51.93 -0.42 0.69 16 36 H 0.06 1.28 7.85 -51.93 -0.41 0.87 16 37 H 0.40 4.32 8.03 -40.82 -0.33 3.99 16 38 H 0.10 0.83 7.79 -51.93 -0.40 0.42 16 39 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 47 H 0.10 0.87 7.95 -51.93 -0.41 0.46 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.03 0.65 8.11 -51.93 -0.42 0.23 16 51 H 0.08 2.09 6.74 -51.93 -0.35 1.74 16 52 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 409.03 15.07 6.16 6.16 Total: -1.00 -33.06 409.03 -11.08 -44.14 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.95 Total: 3.22 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.74 Total: -0.46 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.61 Total: -61.02 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.06 -11.08 -44.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087623905.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.332 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds