Wall clock time and date at job start Wed Apr 1 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47075 * 2 1 4 4 H 1.09000 * 109.99765 * 56.17051 * 3 2 1 5 5 C 1.54326 * 109.88469 * 295.07935 * 3 2 1 6 6 H 1.08997 * 110.71755 * 336.92900 * 5 3 2 7 7 N 1.46492 * 110.72120 * 100.02384 * 5 3 2 8 8 C 1.34780 * 120.00045 * 202.55869 * 7 5 3 9 9 O 1.21284 * 119.99601 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.00240 * 180.02562 * 8 7 5 11 11 N 1.46494 * 109.47097 * 180.02562 * 10 8 7 12 12 C 1.35314 * 126.49994 * 264.68460 * 11 10 8 13 13 N 1.30757 * 108.76538 * 179.80929 * 12 11 10 14 14 C 1.33572 * 109.14817 * 0.42633 * 13 12 11 15 15 C 1.35026 * 107.97943 * 359.77603 * 14 13 12 16 16 C 1.50656 * 124.45012 * 179.85982 * 15 14 13 17 17 C 1.53397 * 108.38466 * 343.58043 * 16 15 14 18 18 C 1.53116 * 109.44606 * 49.64909 * 17 16 15 19 19 C 1.50864 * 128.03054 * 179.79622 * 14 13 12 20 20 C 1.55158 * 103.09968 * 218.47751 * 5 3 2 21 21 C 1.54913 * 101.58347 * 35.41393 * 20 5 3 22 22 N 1.47323 * 110.06584 * 177.34232 * 3 2 1 23 23 C 1.36935 * 125.61668 * 298.25288 * 22 3 2 24 24 H 1.08001 * 119.99872 * 347.99246 * 23 22 3 25 25 C 1.38809 * 120.00044 * 167.99129 * 23 22 3 26 26 N 1.31620 * 119.99869 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99881 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47167 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47374 * 120.00274 * 27 25 23 30 30 H 1.48507 * 109.46763 * 240.00229 * 27 25 23 31 31 H 1.08998 * 109.47234 * 185.49772 * 1 2 3 32 32 H 1.09003 * 109.47515 * 305.49227 * 1 2 3 33 33 H 1.09005 * 109.47467 * 65.49688 * 1 2 3 34 34 H 1.09001 * 109.46805 * 240.00086 * 2 1 3 35 35 H 1.08994 * 109.47131 * 120.00075 * 2 1 3 36 36 H 0.97004 * 120.00341 * 22.56212 * 7 5 3 37 37 H 1.08992 * 109.47079 * 59.99508 * 10 8 7 38 38 H 1.09004 * 109.46666 * 299.99770 * 10 8 7 39 39 H 1.07994 * 125.60838 * 359.95168 * 12 11 10 40 40 H 1.08996 * 109.68623 * 103.30752 * 16 15 14 41 41 H 1.09002 * 109.67378 * 223.85770 * 16 15 14 42 42 H 1.09004 * 109.47333 * 169.64283 * 17 16 15 43 43 H 1.08999 * 109.47503 * 289.65082 * 17 16 15 44 44 H 1.09000 * 109.46074 * 50.00673 * 18 17 16 45 45 H 1.09000 * 109.46211 * 169.96823 * 18 17 16 46 46 H 1.08993 * 109.67918 * 43.58018 * 19 14 13 47 47 H 1.09004 * 109.70734 * 283.06212 * 19 14 13 48 48 H 1.09002 * 110.99857 * 153.48588 * 20 5 3 49 49 H 1.08996 * 111.00592 * 277.33232 * 20 5 3 50 50 H 1.08998 * 110.36582 * 81.82494 * 21 20 5 51 51 H 1.09001 * 110.36519 * 204.04553 * 21 20 5 52 52 H 0.96999 * 119.99517 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6266 1.9840 0.8509 5 6 1.6350 2.1424 -1.3144 6 1 1.4534 1.4102 -2.1011 7 7 0.4539 2.9848 -1.1105 8 6 -0.3278 3.3143 -2.1579 9 8 -0.0536 2.9130 -3.2690 10 6 -1.5424 4.1814 -1.9482 11 7 -2.2186 4.3929 -3.2305 12 6 -2.0582 5.4496 -4.0603 13 7 -2.8247 5.2831 -5.1064 14 6 -3.4978 4.1365 -4.9783 15 6 -3.1318 3.5667 -3.8102 16 6 -3.6705 2.2574 -3.2950 17 6 -4.9481 1.9198 -4.0740 18 6 -4.6802 2.0545 -5.5755 19 6 -4.4988 3.5347 -5.9332 20 6 2.8772 3.0101 -1.6481 21 6 4.0320 2.1024 -1.1556 22 7 3.5117 1.4583 0.0642 23 6 4.2708 0.9551 1.0868 24 1 3.8034 0.6767 2.0198 25 6 5.6409 0.8030 0.9243 26 7 6.2105 1.1429 -0.2125 27 14 6.6765 0.1173 2.3196 28 1 5.8034 -0.1833 3.4825 29 1 7.3500 -1.1276 1.8707 30 1 7.6994 1.1186 2.7151 31 1 -0.3633 -1.0229 0.0985 32 1 -0.3634 0.5967 0.8367 33 1 -0.3634 0.4262 -0.9351 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 0.2345 3.3056 -0.2217 37 1 -1.2358 5.1426 -1.5357 38 1 -2.2246 3.6894 -1.2549 39 1 -1.4030 6.2907 -3.8880 40 1 -2.9305 1.4714 -3.4450 41 1 -3.9008 2.3477 -2.2334 42 1 -5.2513 0.8972 -3.8492 43 1 -5.7430 2.6067 -3.7836 44 1 -3.7749 1.5050 -5.8336 45 1 -5.5235 1.6469 -6.1329 46 1 -4.1302 3.6229 -6.9551 47 1 -5.4528 4.0540 -5.8412 48 1 2.9516 3.1897 -2.7206 49 1 2.8568 3.9501 -1.0967 50 1 4.2716 1.3515 -1.9085 51 1 4.9128 2.7012 -0.9241 52 1 7.1679 1.0362 -0.3262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087660607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:21 Heat of formation + Delta-G solvation = 36.318771 kcal Electronic energy + Delta-G solvation = -31377.482630 eV Core-core repulsion = 27377.929412 eV Total energy + Delta-G solvation = -3999.553218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.43612 -39.86353 -37.85955 -36.78209 -34.30321 -34.19139 -32.88744 -31.83437 -30.63375 -29.23663 -29.03677 -27.94981 -26.38043 -24.45429 -23.68111 -22.52384 -22.11812 -21.32168 -20.55584 -20.30168 -19.65585 -18.97593 -17.46302 -17.23677 -16.85190 -15.93683 -15.50283 -15.36251 -14.86329 -14.81755 -14.54462 -14.14237 -14.05317 -13.97057 -13.80457 -13.58112 -13.39252 -13.24745 -12.81091 -12.68626 -12.61241 -12.09206 -12.06913 -12.00604 -11.74996 -11.26566 -11.13062 -11.08598 -11.06467 -10.97851 -10.90988 -10.72604 -10.56686 -10.45642 -10.16162 -10.10770 -9.87351 -9.83342 -9.72555 -9.41003 -8.81865 -8.66722 -8.13094 -6.91238 -5.81083 -3.18203 1.86705 2.45706 2.47949 3.07163 3.23443 3.33737 3.39578 3.41882 4.28318 4.35397 4.40130 4.50288 4.56656 4.60783 4.67436 4.70339 4.95894 5.13375 5.15555 5.25955 5.28305 5.36595 5.40168 5.44922 5.46175 5.53989 5.62435 5.68035 5.69180 5.73435 5.76818 5.85932 5.93452 6.02630 6.11728 6.12409 6.14344 6.29154 6.31368 6.34871 6.44203 6.57290 6.59897 6.72354 6.82900 7.00100 7.08703 7.43614 7.47324 7.53656 7.72657 8.05447 8.12766 8.19654 9.10789 9.71593 10.37843 11.29798 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.002355 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.080552 B =11889.222955 C =12512.927055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.036 0.964 5 C 0.139 3.861 6 H 0.093 0.907 7 N -0.709 5.709 8 C 0.493 3.507 9 O -0.520 6.520 10 C 0.084 3.916 11 N -0.434 5.434 12 C 0.184 3.816 13 N -0.485 5.485 14 C -0.002 4.002 15 C -0.011 4.011 16 C -0.044 4.044 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.031 4.031 20 C -0.156 4.156 21 C 0.172 3.828 22 N -0.594 5.594 23 C -0.228 4.228 24 H 0.077 0.923 25 C -0.005 4.005 26 N -0.917 5.917 27 Si 0.911 3.089 28 H -0.279 1.279 29 H -0.290 1.290 30 H -0.290 1.290 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.399 0.601 37 H 0.124 0.876 38 H 0.117 0.883 39 H 0.203 0.797 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.025 0.975 51 H 0.081 0.919 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.882 5.057 -3.243 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.035 3.965 6 H 0.111 0.889 7 N -0.360 5.360 8 C 0.276 3.724 9 O -0.395 6.395 10 C -0.043 4.043 11 N -0.116 5.116 12 C -0.097 4.097 13 N -0.202 5.202 14 C -0.131 4.131 15 C -0.125 4.125 16 C -0.082 4.082 17 C -0.149 4.149 18 C -0.158 4.158 19 C -0.069 4.069 20 C -0.195 4.195 21 C 0.047 3.953 22 N -0.319 5.319 23 C -0.356 4.356 24 H 0.094 0.906 25 C -0.201 4.201 26 N -0.563 5.563 27 Si 0.741 3.259 28 H -0.205 1.205 29 H -0.217 1.217 30 H -0.217 1.217 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.219 0.781 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.043 0.957 51 H 0.099 0.901 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.408 5.249 -4.551 22.507 hybrid contribution 0.920 -0.688 1.950 2.264 sum -20.488 4.561 -2.600 21.150 Atomic orbital electron populations 1.21761 0.97276 1.00603 1.00707 1.22014 0.93572 0.99156 1.02486 1.21115 0.87139 0.93321 0.93082 0.94658 1.22149 0.83199 0.92327 0.98851 0.88928 1.46027 1.27556 1.52332 1.10118 1.20571 0.84352 0.81853 0.85586 1.90800 1.71856 1.53270 1.23567 1.21698 0.94534 1.02964 0.85121 1.44512 1.31607 1.18203 1.17244 1.24918 1.03184 0.93833 0.87793 1.69944 1.09809 1.18438 1.22038 1.20376 1.02939 0.94105 0.95692 1.20812 0.97860 0.96663 0.97214 1.20092 0.97387 0.91602 0.99115 1.21527 0.96450 1.01692 0.95240 1.21608 1.02178 0.96109 0.95854 1.19886 0.95872 0.94071 0.97049 1.23423 0.96714 0.99069 1.00338 1.21489 0.93368 0.93029 0.87406 1.44542 0.98242 1.68573 1.20554 1.18993 0.89066 1.35764 0.91786 0.90555 1.24884 0.97033 1.01069 0.97156 1.69930 1.10134 1.52587 1.23695 0.86068 0.80314 0.78460 0.81032 1.20457 1.21663 1.21718 0.93594 0.93449 0.93493 0.92346 0.91646 0.76705 0.85808 0.86468 0.78063 0.90294 0.91274 0.91046 0.91517 0.91464 0.91180 0.90674 0.91014 0.91955 0.92009 0.95696 0.90112 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.57 37.16 0.36 -1.58 16 2 C -0.13 -2.30 5.42 -26.73 -0.14 -2.45 16 3 C 0.16 2.97 2.95 -66.79 -0.20 2.77 16 4 H 0.04 0.62 7.70 -51.93 -0.40 0.22 16 5 C 0.14 2.30 1.95 -66.10 -0.13 2.17 16 6 H 0.09 1.72 7.25 -51.93 -0.38 1.35 16 7 N -0.71 -8.57 4.92 -52.03 -0.26 -8.83 16 8 C 0.49 6.15 7.90 -10.98 -0.09 6.07 16 9 O -0.52 -9.10 16.11 5.55 0.09 -9.01 16 10 C 0.08 0.70 6.48 -5.20 -0.03 0.67 16 11 N -0.43 -4.96 2.23 -115.26 -0.26 -5.22 16 12 C 0.18 2.26 12.57 -89.91 -1.13 1.13 16 13 N -0.48 -7.08 11.25 -10.74 -0.12 -7.20 16 14 C 0.00 -0.02 6.98 -82.90 -0.58 -0.60 16 15 C -0.01 -0.13 6.73 -81.85 -0.55 -0.68 16 16 C -0.04 -0.41 6.06 -27.70 -0.17 -0.58 16 17 C -0.11 -0.86 5.91 -26.47 -0.16 -1.01 16 18 C -0.12 -1.00 5.90 -26.49 -0.16 -1.16 16 19 C -0.03 -0.31 6.30 -27.62 -0.17 -0.49 16 20 C -0.16 -2.89 6.77 -24.58 -0.17 -3.06 16 21 C 0.17 4.03 5.46 -2.53 -0.01 4.01 16 22 N -0.59 -14.06 3.14 -162.34 -0.51 -14.57 16 23 C -0.23 -5.96 9.80 -15.06 -0.15 -6.11 16 24 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 25 C 0.00 -0.12 5.47 -17.43 -0.10 -0.22 16 26 N -0.92 -26.07 10.47 55.49 0.58 -25.49 16 27 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.62 7.38 -51.93 -0.38 0.24 16 34 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 36 H 0.40 3.66 8.34 -40.82 -0.34 3.32 16 37 H 0.12 0.65 8.13 -51.93 -0.42 0.22 16 38 H 0.12 0.68 7.95 -51.93 -0.41 0.26 16 39 H 0.20 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.54 7.99 -51.93 -0.41 0.12 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 44 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.02 0.64 8.12 -51.93 -0.42 0.22 16 51 H 0.08 2.11 6.72 -51.93 -0.35 1.76 16 52 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 410.51 15.07 6.19 6.19 Total: -1.00 -34.10 410.51 -11.85 -45.96 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -8.97 Total: 2.97 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -3.57 Total: -1.12 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -0.56 Total: -61.31 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.10 -11.85 -45.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087660607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.274 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds