Wall clock time and date at job start Wed Apr 1 2020 05:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47075 * 2 1 4 4 H 1.09000 * 109.99765 * 56.17051 * 3 2 1 5 5 C 1.54326 * 109.88469 * 295.07935 * 3 2 1 6 6 H 1.08997 * 110.71755 * 336.92900 * 5 3 2 7 7 N 1.46492 * 110.72120 * 100.02384 * 5 3 2 8 8 C 1.34780 * 120.00045 * 202.55869 * 7 5 3 9 9 O 1.21284 * 119.99601 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.00240 * 180.02562 * 8 7 5 11 11 N 1.46494 * 109.47097 * 180.02562 * 10 8 7 12 12 C 1.35314 * 126.49994 * 264.68460 * 11 10 8 13 13 N 1.30757 * 108.76538 * 179.80929 * 12 11 10 14 14 C 1.33572 * 109.14817 * 0.42633 * 13 12 11 15 15 C 1.35026 * 107.97943 * 359.77603 * 14 13 12 16 16 C 1.50656 * 124.45012 * 179.85982 * 15 14 13 17 17 C 1.53397 * 108.38466 * 343.58043 * 16 15 14 18 18 C 1.53116 * 109.44606 * 49.64909 * 17 16 15 19 19 C 1.50864 * 128.03054 * 179.79622 * 14 13 12 20 20 C 1.55158 * 103.09968 * 218.47751 * 5 3 2 21 21 C 1.54913 * 101.58347 * 35.41393 * 20 5 3 22 22 N 1.47323 * 110.06584 * 177.34232 * 3 2 1 23 23 C 1.36935 * 125.61668 * 298.25288 * 22 3 2 24 24 H 1.08001 * 119.99872 * 347.99246 * 23 22 3 25 25 C 1.38809 * 120.00044 * 167.99129 * 23 22 3 26 26 N 1.31620 * 119.99869 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99881 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47167 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47374 * 120.00274 * 27 25 23 30 30 H 1.48507 * 109.46763 * 240.00229 * 27 25 23 31 31 H 1.08998 * 109.47234 * 185.49772 * 1 2 3 32 32 H 1.09003 * 109.47515 * 305.49227 * 1 2 3 33 33 H 1.09005 * 109.47467 * 65.49688 * 1 2 3 34 34 H 1.09001 * 109.46805 * 240.00086 * 2 1 3 35 35 H 1.08994 * 109.47131 * 120.00075 * 2 1 3 36 36 H 0.97004 * 120.00341 * 22.56212 * 7 5 3 37 37 H 1.08992 * 109.47079 * 59.99508 * 10 8 7 38 38 H 1.09004 * 109.46666 * 299.99770 * 10 8 7 39 39 H 1.07994 * 125.60838 * 359.95168 * 12 11 10 40 40 H 1.08996 * 109.68623 * 103.30752 * 16 15 14 41 41 H 1.09002 * 109.67378 * 223.85770 * 16 15 14 42 42 H 1.09004 * 109.47333 * 169.64283 * 17 16 15 43 43 H 1.08999 * 109.47503 * 289.65082 * 17 16 15 44 44 H 1.09000 * 109.46074 * 50.00673 * 18 17 16 45 45 H 1.09000 * 109.46211 * 169.96823 * 18 17 16 46 46 H 1.08993 * 109.67918 * 43.58018 * 19 14 13 47 47 H 1.09004 * 109.70734 * 283.06212 * 19 14 13 48 48 H 1.09002 * 110.99857 * 153.48588 * 20 5 3 49 49 H 1.08996 * 111.00592 * 277.33232 * 20 5 3 50 50 H 1.08998 * 110.36582 * 81.82494 * 21 20 5 51 51 H 1.09001 * 110.36519 * 204.04553 * 21 20 5 52 52 H 0.96999 * 119.99517 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6266 1.9840 0.8509 5 6 1.6350 2.1424 -1.3144 6 1 1.4534 1.4102 -2.1011 7 7 0.4539 2.9848 -1.1105 8 6 -0.3278 3.3143 -2.1579 9 8 -0.0536 2.9130 -3.2690 10 6 -1.5424 4.1814 -1.9482 11 7 -2.2186 4.3929 -3.2305 12 6 -2.0582 5.4496 -4.0603 13 7 -2.8247 5.2831 -5.1064 14 6 -3.4978 4.1365 -4.9783 15 6 -3.1318 3.5667 -3.8102 16 6 -3.6705 2.2574 -3.2950 17 6 -4.9481 1.9198 -4.0740 18 6 -4.6802 2.0545 -5.5755 19 6 -4.4988 3.5347 -5.9332 20 6 2.8772 3.0101 -1.6481 21 6 4.0320 2.1024 -1.1556 22 7 3.5117 1.4583 0.0642 23 6 4.2708 0.9551 1.0868 24 1 3.8034 0.6767 2.0198 25 6 5.6409 0.8030 0.9243 26 7 6.2105 1.1429 -0.2125 27 14 6.6765 0.1173 2.3196 28 1 5.8034 -0.1833 3.4825 29 1 7.3500 -1.1276 1.8707 30 1 7.6994 1.1186 2.7151 31 1 -0.3633 -1.0229 0.0985 32 1 -0.3634 0.5967 0.8367 33 1 -0.3634 0.4262 -0.9351 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 0.2345 3.3056 -0.2217 37 1 -1.2358 5.1426 -1.5357 38 1 -2.2246 3.6894 -1.2549 39 1 -1.4030 6.2907 -3.8880 40 1 -2.9305 1.4714 -3.4450 41 1 -3.9008 2.3477 -2.2334 42 1 -5.2513 0.8972 -3.8492 43 1 -5.7430 2.6067 -3.7836 44 1 -3.7749 1.5050 -5.8336 45 1 -5.5235 1.6469 -6.1329 46 1 -4.1302 3.6229 -6.9551 47 1 -5.4528 4.0540 -5.8412 48 1 2.9516 3.1897 -2.7206 49 1 2.8568 3.9501 -1.0967 50 1 4.2716 1.3515 -1.9085 51 1 4.9128 2.7012 -0.9241 52 1 7.1679 1.0362 -0.3262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087660607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:20 Heat of formation + Delta-G solvation = 16.429004 kcal Electronic energy + Delta-G solvation = -31378.345115 eV Core-core repulsion = 27377.929412 eV Total energy + Delta-G solvation = -4000.415703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.27897 -41.05395 -39.31554 -37.49414 -35.68665 -35.16089 -34.32111 -33.51005 -31.48284 -30.84025 -29.82619 -29.01558 -27.71853 -26.25431 -24.44899 -23.81698 -22.89778 -22.51076 -21.92688 -21.58472 -20.96926 -19.76299 -18.80624 -18.44617 -18.06842 -17.17735 -16.69294 -16.37727 -16.29034 -15.82737 -15.61828 -15.48879 -15.36371 -15.08415 -14.74949 -14.52714 -14.38315 -14.30248 -14.17669 -13.82309 -13.56347 -13.41831 -13.29797 -13.16984 -12.91128 -12.80359 -12.73222 -12.61115 -12.23582 -12.04414 -11.98029 -11.92563 -11.80539 -11.75838 -11.72208 -11.57949 -11.39212 -11.26781 -10.74374 -10.71444 -10.36568 -10.05478 -8.99632 -8.86710 -7.85399 -5.23604 0.98354 1.46446 1.47370 1.49976 1.57207 1.69723 2.15042 2.25617 2.50801 3.33733 3.48540 3.54870 3.70195 3.76995 3.81701 3.83764 3.90473 4.01167 4.02197 4.15096 4.17393 4.25923 4.35552 4.39759 4.39977 4.59694 4.60430 4.63594 4.65766 4.72984 4.73979 4.83360 4.84823 4.99093 5.04208 5.12271 5.12759 5.19173 5.20625 5.28636 5.28725 5.44832 5.46413 5.49419 5.51012 5.54518 5.64222 5.71394 5.89199 6.22035 6.24406 6.52814 7.07786 7.16786 7.19154 7.75839 8.41600 9.24951 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.002355 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.080552 B =11889.222955 C =12512.927055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 C 0.159 3.841 4 H 0.061 0.939 5 C 0.160 3.840 6 H 0.071 0.929 7 N -0.693 5.693 8 C 0.497 3.503 9 O -0.574 6.574 10 C 0.089 3.911 11 N -0.436 5.436 12 C 0.174 3.826 13 N -0.527 5.527 14 C -0.034 4.034 15 C -0.017 4.017 16 C -0.043 4.043 17 C -0.107 4.107 18 C -0.116 4.116 19 C -0.032 4.032 20 C -0.140 4.140 21 C 0.179 3.821 22 N -0.614 5.614 23 C -0.227 4.227 24 H 0.086 0.914 25 C -0.067 4.067 26 N -0.952 5.952 27 Si 0.974 3.026 28 H -0.261 1.261 29 H -0.298 1.298 30 H -0.294 1.294 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.030 0.970 35 H 0.049 0.951 36 H 0.419 0.581 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.228 0.772 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.078 0.922 50 H -0.014 1.014 51 H 0.046 0.954 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.084 5.539 -0.698 25.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.168 4.168 3 C 0.053 3.947 4 H 0.078 0.922 5 C 0.054 3.946 6 H 0.089 0.911 7 N -0.346 5.346 8 C 0.283 3.717 9 O -0.452 6.452 10 C -0.036 4.036 11 N -0.118 5.118 12 C -0.107 4.107 13 N -0.245 5.245 14 C -0.162 4.162 15 C -0.133 4.133 16 C -0.081 4.081 17 C -0.145 4.145 18 C -0.154 4.154 19 C -0.070 4.070 20 C -0.180 4.180 21 C 0.053 3.947 22 N -0.339 5.339 23 C -0.356 4.356 24 H 0.104 0.896 25 C -0.260 4.260 26 N -0.601 5.601 27 Si 0.803 3.197 28 H -0.185 1.185 29 H -0.225 1.225 30 H -0.221 1.221 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.257 0.743 37 H 0.183 0.817 38 H 0.173 0.827 39 H 0.245 0.755 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.097 0.903 50 H 0.004 0.996 51 H 0.065 0.935 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -24.678 5.742 -1.949 25.412 hybrid contribution 1.903 -0.822 1.113 2.353 sum -22.775 4.920 -0.836 23.315 Atomic orbital electron populations 1.21640 0.93444 1.02039 1.01861 1.21913 0.96847 0.97657 1.00363 1.21329 0.84165 0.94517 0.94704 0.92173 1.21573 0.84105 0.91810 0.97101 0.91130 1.45712 1.25933 1.51508 1.11440 1.21299 0.84897 0.81110 0.84379 1.90802 1.73316 1.55326 1.25794 1.21996 0.92847 1.04392 0.84412 1.44693 1.31326 1.17685 1.18076 1.25478 1.02947 0.94770 0.87499 1.69902 1.11235 1.19724 1.23635 1.20920 1.03955 0.94351 0.97020 1.21273 0.97648 0.97321 0.97039 1.20197 0.97524 0.89627 1.00762 1.21540 0.95847 1.03022 0.94088 1.21598 1.02180 0.94511 0.97116 1.19970 0.95693 0.95381 0.95977 1.23210 0.95755 0.98915 1.00120 1.21168 0.94248 0.92387 0.86857 1.44786 1.00698 1.68544 1.19828 1.19372 0.89446 1.34113 0.92648 0.89609 1.25686 0.98498 1.02388 0.99394 1.70152 1.09706 1.54516 1.25734 0.85070 0.78669 0.77040 0.78934 1.18529 1.22548 1.22121 0.92446 0.90868 0.93292 0.95138 0.93196 0.74262 0.81717 0.82737 0.75546 0.91896 0.88830 0.89143 0.90649 0.93289 0.89023 0.91893 0.90048 0.92265 0.90342 0.99621 0.93545 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.57 71.98 0.69 -2.39 16 2 C -0.13 -4.31 5.42 30.59 0.17 -4.14 16 3 C 0.16 5.63 2.95 45.28 0.13 5.77 16 4 H 0.06 1.89 7.70 -2.39 -0.02 1.87 16 5 C 0.16 5.10 1.95 46.18 0.09 5.19 16 6 H 0.07 2.63 7.25 -2.39 -0.02 2.61 16 7 N -0.69 -14.37 4.92 -436.92 -2.15 -16.52 16 8 C 0.50 10.89 7.90 87.66 0.69 11.59 16 9 O -0.57 -19.49 16.11 -3.04 -0.05 -19.54 16 10 C 0.09 1.08 6.48 85.63 0.56 1.64 16 11 N -0.44 -8.84 2.23 -518.57 -1.16 -9.99 16 12 C 0.17 4.03 12.57 180.10 2.26 6.29 16 13 N -0.53 -15.30 11.25 -187.90 -2.11 -17.41 16 14 C -0.03 -0.89 6.98 41.61 0.29 -0.60 16 15 C -0.02 -0.39 6.73 41.14 0.28 -0.11 16 16 C -0.04 -0.70 6.06 29.97 0.18 -0.52 16 17 C -0.11 -1.37 5.91 30.77 0.18 -1.19 16 18 C -0.12 -1.81 5.90 30.75 0.18 -1.63 16 19 C -0.03 -0.65 6.30 30.02 0.19 -0.46 16 20 C -0.14 -5.20 6.77 31.99 0.22 -4.99 16 21 C 0.18 8.75 5.46 86.86 0.47 9.22 16 22 N -0.61 -29.32 3.14 -667.54 -2.10 -31.42 16 23 C -0.23 -11.92 9.80 84.03 0.82 -11.09 16 24 H 0.09 4.26 7.83 -2.91 -0.02 4.24 16 25 C -0.07 -3.68 5.47 84.86 0.46 -3.22 16 26 N -0.95 -56.59 10.47 21.65 0.23 -56.36 16 27 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 28 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 29 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 30 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.14 7.38 -2.38 -0.02 1.12 16 34 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 35 H 0.05 1.82 7.93 -2.39 -0.02 1.80 16 36 H 0.42 5.53 8.34 -92.71 -0.77 4.75 16 37 H 0.17 0.73 8.13 -2.39 -0.02 0.71 16 38 H 0.16 0.82 7.95 -2.39 -0.02 0.80 16 39 H 0.23 3.58 8.06 -2.91 -0.02 3.55 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 1.05 7.99 -2.39 -0.02 1.03 16 42 H 0.09 0.83 8.14 -2.38 -0.02 0.82 16 43 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 44 H 0.05 0.93 8.11 -2.39 -0.02 0.91 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 48 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 50 H -0.01 -0.79 8.12 -2.39 -0.02 -0.81 16 51 H 0.05 2.56 6.72 -2.39 -0.02 2.54 16 52 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -80.49 410.51 2.69 -77.80 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.13 Total: 17.56 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 7.87 Total: 9.35 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -7.29 Total: -131.71 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.54 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -80.49 2.69 -77.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087660607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.226 kcal (2) G-P(sol) polarization free energy of solvation -80.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds