Wall clock time and date at job start Wed Apr 1 2020 05:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47117 * 2 1 4 4 H 1.09005 * 110.00127 * 305.46432 * 3 2 1 5 5 C 1.54334 * 109.88229 * 184.37042 * 3 2 1 6 6 H 1.08993 * 110.86616 * 336.82463 * 5 3 2 7 7 N 1.46504 * 110.71839 * 100.02520 * 5 3 2 8 8 C 1.34769 * 119.99707 * 199.97595 * 7 5 3 9 9 O 1.21289 * 120.00285 * 359.97438 * 8 7 5 10 10 C 1.50702 * 120.00121 * 180.02562 * 8 7 5 11 11 H 1.08996 * 109.46075 * 300.01578 * 10 8 7 12 12 C 1.53109 * 109.46574 * 59.99771 * 10 8 7 13 13 C 1.53358 * 109.51098 * 190.29524 * 12 10 8 14 14 C 1.50838 * 108.37826 * 310.05826 * 13 12 10 15 15 C 1.39303 * 127.89945 * 196.52134 * 14 13 12 16 16 N 1.31072 * 108.07781 * 179.97438 * 15 14 13 17 17 N 1.40291 * 108.27024 * 0.02562 * 16 15 14 18 18 C 1.46497 * 126.09169 * 180.02562 * 17 16 15 19 19 C 1.34329 * 107.81890 * 0.06413 * 17 16 15 20 20 C 1.50820 * 128.03348 * 179.76890 * 19 17 16 21 21 C 1.55156 * 102.93955 * 218.39122 * 5 3 2 22 22 C 1.54909 * 101.58662 * 35.50200 * 21 5 3 23 23 N 1.47020 * 109.88336 * 66.56215 * 3 2 1 24 24 C 1.36937 * 125.65082 * 298.37568 * 23 3 2 25 25 H 1.08000 * 119.99772 * 337.08580 * 24 23 3 26 26 C 1.38809 * 119.99882 * 157.07596 * 24 23 3 27 27 N 1.31623 * 119.99799 * 158.65440 * 26 24 23 28 28 Si 1.86796 * 120.00388 * 338.65283 * 26 24 23 29 29 H 1.48498 * 109.47345 * 90.85690 * 28 26 24 30 30 H 1.48505 * 109.47065 * 210.85900 * 28 26 24 31 31 H 1.48501 * 109.47090 * 330.85658 * 28 26 24 32 32 H 1.09000 * 109.46807 * 293.23584 * 1 2 3 33 33 H 1.08998 * 109.46741 * 53.23237 * 1 2 3 34 34 H 1.08993 * 109.47329 * 173.23734 * 1 2 3 35 35 H 1.09002 * 109.46989 * 240.00364 * 2 1 3 36 36 H 1.08992 * 109.47229 * 120.00414 * 2 1 3 37 37 H 0.97000 * 119.99638 * 19.97798 * 7 5 3 38 38 H 1.08998 * 109.46601 * 310.31151 * 12 10 8 39 39 H 1.09002 * 109.46120 * 70.28349 * 12 10 8 40 40 H 1.09000 * 109.68073 * 69.78261 * 13 12 10 41 41 H 1.08995 * 109.68143 * 190.29994 * 13 12 10 42 42 H 1.07999 * 125.95823 * 359.91871 * 15 14 13 43 43 H 1.09000 * 109.47856 * 90.01908 * 18 17 16 44 44 H 1.09004 * 109.47382 * 210.02376 * 18 17 16 45 45 H 1.09006 * 109.46808 * 330.01570 * 18 17 16 46 46 H 1.09001 * 109.68249 * 76.94459 * 20 19 17 47 47 H 1.09004 * 109.68459 * 316.39083 * 20 19 17 48 48 H 1.09000 * 111.00111 * 153.58078 * 21 5 3 49 49 H 1.08995 * 111.00218 * 277.42146 * 21 5 3 50 50 H 1.08997 * 110.36349 * 81.82285 * 22 21 5 51 51 H 1.08998 * 110.36502 * 204.15050 * 22 21 5 52 52 H 0.96996 * 120.00501 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6040 1.9921 -0.8343 5 6 3.5794 1.4549 -0.1106 6 1 4.0012 0.5119 0.2370 7 7 3.9979 1.7318 -1.4870 8 6 5.2390 1.3995 -1.8937 9 8 6.0097 0.8716 -1.1200 10 6 5.6698 1.6849 -3.3093 11 1 5.0150 1.1559 -4.0018 12 6 5.5840 3.1903 -3.5751 13 6 5.7706 3.4572 -5.0737 14 6 7.0046 2.7241 -5.5374 15 6 7.7274 2.9226 -6.7115 16 7 8.7273 2.0752 -6.7219 17 7 8.6671 1.3095 -5.5478 18 6 9.5981 0.2462 -5.1623 19 6 7.6031 1.7245 -4.8406 20 6 7.1132 1.2094 -3.5104 21 6 3.9860 2.6187 0.8316 22 6 2.9306 2.4900 1.9583 23 7 1.6882 2.0972 1.2685 24 6 0.4172 2.3070 1.7327 25 1 -0.4123 2.3349 1.0417 26 6 0.1949 2.4837 3.0914 27 7 -0.8991 3.0866 3.5064 28 14 1.4482 1.8659 4.3311 29 1 2.4283 2.9427 4.6228 30 1 0.7539 1.4756 5.5845 31 1 2.1588 0.6881 3.7715 32 1 -0.3633 0.4054 0.9443 33 1 -0.3633 0.6151 -0.8232 34 1 -0.3633 -1.0204 -0.1210 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 3.3816 2.1544 -2.1055 38 1 4.6086 3.5599 -3.2590 39 1 6.3657 3.7031 -3.0147 40 1 4.9009 3.0955 -5.6221 41 1 5.8929 4.5269 -5.2436 42 1 7.5026 3.6477 -7.4797 43 1 10.4187 0.6730 -4.5856 44 1 9.0744 -0.4933 -4.5565 45 1 9.9939 -0.2325 -6.0580 46 1 7.7423 1.6008 -2.7109 47 1 7.1459 0.1199 -3.5040 48 1 4.9933 2.4721 1.2212 49 1 3.9010 3.5797 0.3245 50 1 3.2284 1.7209 2.6708 51 1 2.7975 3.4462 2.4643 52 1 -1.0547 3.2098 4.4558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087702115.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:41 Heat of formation + Delta-G solvation = 55.891754 kcal Electronic energy + Delta-G solvation = -31220.003795 eV Core-core repulsion = 27221.299326 eV Total energy + Delta-G solvation = -3998.704470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.84533 -40.08635 -38.24777 -36.34079 -34.29482 -33.92837 -32.56375 -32.14349 -30.57918 -30.22410 -29.12764 -27.16728 -26.88542 -24.88950 -23.74796 -22.73613 -22.19218 -21.25655 -20.92707 -20.31352 -19.39365 -18.91489 -17.47537 -17.01953 -16.61115 -16.14440 -15.81451 -15.19396 -15.04487 -14.79761 -14.69194 -14.43202 -13.80831 -13.74014 -13.67183 -13.55730 -13.23973 -13.15383 -13.04213 -12.81706 -12.68867 -12.48971 -12.22809 -12.12580 -11.89760 -11.86818 -11.44303 -11.20163 -11.12451 -11.05021 -10.92540 -10.76820 -10.67785 -10.40362 -10.33576 -10.11203 -9.87084 -9.69867 -9.51652 -9.33556 -8.86606 -8.64015 -8.46120 -7.05408 -5.98495 -3.30856 1.59498 2.19737 2.53678 2.61408 3.15330 3.34362 3.47752 3.49850 4.17222 4.23877 4.37480 4.50913 4.52486 4.69786 4.79967 4.82007 4.85832 5.01810 5.05158 5.06224 5.08597 5.13722 5.19646 5.26933 5.27471 5.34066 5.57234 5.58028 5.62399 5.65820 5.77271 5.79496 5.87009 5.91845 5.94775 6.03947 6.06141 6.15052 6.30163 6.38449 6.41384 6.50076 6.58754 6.59573 6.72397 6.73975 6.75046 6.99734 7.29111 7.44631 7.55792 7.72018 8.23438 8.28487 8.79335 9.64729 10.14510 11.16846 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.002309 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.558136 B =12121.919052 C =12295.013084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.159 3.841 4 H 0.046 0.954 5 C 0.134 3.866 6 H 0.094 0.906 7 N -0.713 5.713 8 C 0.519 3.481 9 O -0.543 6.543 10 C -0.099 4.099 11 H 0.103 0.897 12 C -0.112 4.112 13 C -0.037 4.037 14 C -0.244 4.244 15 C 0.055 3.945 16 N -0.304 5.304 17 N -0.368 5.368 18 C 0.099 3.901 19 C 0.090 3.910 20 C -0.036 4.036 21 C -0.139 4.139 22 C 0.111 3.889 23 N -0.598 5.598 24 C -0.234 4.234 25 H 0.096 0.904 26 C 0.024 3.976 27 N -0.907 5.907 28 Si 0.878 3.122 29 H -0.287 1.287 30 H -0.303 1.303 31 H -0.271 1.271 32 H 0.094 0.906 33 H 0.041 0.959 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.400 0.600 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.182 0.818 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.029 0.971 51 H 0.060 0.940 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.090 -2.640 -18.735 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C 0.051 3.949 4 H 0.064 0.936 5 C 0.029 3.971 6 H 0.112 0.888 7 N -0.363 5.363 8 C 0.305 3.695 9 O -0.421 6.421 10 C -0.121 4.121 11 H 0.121 0.879 12 C -0.150 4.150 13 C -0.075 4.075 14 C -0.256 4.256 15 C -0.130 4.130 16 N -0.125 5.125 17 N -0.149 5.149 18 C -0.043 4.043 19 C -0.039 4.039 20 C -0.075 4.075 21 C -0.179 4.179 22 C -0.014 4.014 23 N -0.324 5.324 24 C -0.361 4.361 25 H 0.113 0.887 26 C -0.175 4.175 27 N -0.550 5.550 28 Si 0.708 3.292 29 H -0.214 1.214 30 H -0.231 1.231 31 H -0.197 1.197 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.235 0.765 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.199 0.801 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.114 0.886 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.046 0.954 51 H 0.078 0.922 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.575 -3.497 -18.613 25.838 hybrid contribution -0.244 0.020 0.960 0.991 sum 17.331 -3.477 -17.653 24.982 Atomic orbital electron populations 1.21952 0.95349 0.99346 1.04486 1.21906 0.97277 0.97310 0.99944 1.21180 0.89925 0.92565 0.91179 0.93601 1.22111 0.95612 0.99030 0.80327 0.88804 1.46031 1.14419 1.62148 1.13711 1.20398 0.81889 0.78014 0.89229 1.90700 1.52447 1.43094 1.55815 1.21273 0.97257 0.98849 0.94721 0.87914 1.21626 1.03233 0.93106 0.96991 1.19963 0.93882 0.99320 0.94332 1.19918 1.03750 1.04032 0.97865 1.23570 0.92990 0.98403 0.98016 1.77520 1.23271 1.08865 1.02891 1.48182 1.21948 1.29270 1.15495 1.21879 0.92450 0.87959 1.01990 1.20899 0.90083 0.97068 0.95856 1.20061 0.95205 1.01141 0.91063 1.23116 0.98945 0.98297 0.97511 1.21966 0.86417 0.98832 0.94216 1.44763 1.01823 1.66117 1.19736 1.18565 0.82735 1.43315 0.91512 0.88685 1.25086 0.96149 0.99509 0.96738 1.69818 1.27460 1.42648 1.15068 0.87003 0.80955 0.80001 0.81196 1.21430 1.23079 1.19685 0.88742 0.93980 0.94970 0.93902 0.92490 0.76462 0.90444 0.90919 0.90950 0.90592 0.80097 0.90617 0.89361 0.89266 0.88602 0.89743 0.91354 0.90981 0.95381 0.92170 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.03 37.16 0.34 -2.46 16 2 C -0.12 -2.17 5.46 -26.73 -0.15 -2.32 16 3 C 0.16 2.83 2.99 -66.95 -0.20 2.63 16 4 H 0.05 0.79 7.69 -51.93 -0.40 0.39 16 5 C 0.13 2.10 2.76 -66.09 -0.18 1.92 16 6 H 0.09 1.61 7.41 -51.93 -0.38 1.23 16 7 N -0.71 -8.59 5.02 -52.03 -0.26 -8.86 16 8 C 0.52 6.29 7.15 -10.99 -0.08 6.21 16 9 O -0.54 -8.57 15.55 5.55 0.09 -8.49 16 10 C -0.10 -0.87 2.49 -91.56 -0.23 -1.10 16 11 H 0.10 0.78 8.11 -51.93 -0.42 0.36 16 12 C -0.11 -0.86 5.18 -26.49 -0.14 -1.00 16 13 C -0.04 -0.26 6.28 -27.63 -0.17 -0.44 16 14 C -0.24 -2.29 5.91 -105.05 -0.62 -2.91 16 15 C 0.05 0.53 12.00 -17.48 -0.21 0.32 16 16 N -0.30 -3.48 12.59 30.55 0.38 -3.09 16 17 N -0.37 -3.70 4.00 -63.88 -0.26 -3.95 16 18 C 0.10 0.63 11.32 59.85 0.68 1.30 16 19 C 0.09 0.88 6.73 -82.33 -0.55 0.33 16 20 C -0.04 -0.32 4.63 -27.67 -0.13 -0.45 16 21 C -0.14 -2.33 6.77 -24.58 -0.17 -2.50 16 22 C 0.11 2.32 4.77 -2.52 -0.01 2.31 16 23 N -0.60 -13.29 2.88 -162.57 -0.47 -13.76 16 24 C -0.23 -6.10 7.96 -15.06 -0.12 -6.22 16 25 H 0.10 2.62 7.12 -52.49 -0.37 2.24 16 26 C 0.02 0.67 5.44 -17.43 -0.09 0.58 16 27 N -0.91 -26.90 13.97 55.49 0.78 -26.12 16 28 Si 0.88 22.00 24.42 -169.99 -4.15 17.85 16 29 H -0.29 -7.06 6.95 56.52 0.39 -6.67 16 30 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 31 H -0.27 -6.69 6.39 56.52 0.36 -6.33 16 32 H 0.09 2.06 5.36 -51.93 -0.28 1.78 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.40 3.89 7.65 -40.82 -0.31 3.58 16 38 H 0.08 0.53 7.30 -51.93 -0.38 0.15 16 39 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.42 7.57 -51.93 -0.39 0.03 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.97 7.78 -51.93 -0.40 0.56 16 47 H 0.08 0.73 7.75 -51.93 -0.40 0.33 16 48 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 49 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.03 0.63 5.28 -51.93 -0.27 0.35 16 51 H 0.06 1.34 7.24 -51.93 -0.38 0.96 16 52 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 397.92 15.07 6.00 6.00 Total: -1.00 -33.13 397.92 -8.59 -41.71 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.65 Total: 2.51 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.04 Total: -3.80 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.17 Total: -55.78 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.15 Total: 17.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.13 -8.59 -41.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087702115.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.606 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds