Wall clock time and date at job start Wed Apr 1 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47117 * 2 1 4 4 H 1.09005 * 110.00127 * 305.46432 * 3 2 1 5 5 C 1.54334 * 109.88229 * 184.37042 * 3 2 1 6 6 H 1.08993 * 110.86616 * 336.82463 * 5 3 2 7 7 N 1.46504 * 110.71839 * 100.02520 * 5 3 2 8 8 C 1.34769 * 119.99707 * 199.97595 * 7 5 3 9 9 O 1.21289 * 120.00285 * 359.97438 * 8 7 5 10 10 C 1.50702 * 120.00121 * 180.02562 * 8 7 5 11 11 H 1.08996 * 109.46075 * 300.01578 * 10 8 7 12 12 C 1.53109 * 109.46574 * 59.99771 * 10 8 7 13 13 C 1.53358 * 109.51098 * 190.29524 * 12 10 8 14 14 C 1.50838 * 108.37826 * 310.05826 * 13 12 10 15 15 C 1.39303 * 127.89945 * 196.52134 * 14 13 12 16 16 N 1.31072 * 108.07781 * 179.97438 * 15 14 13 17 17 N 1.40291 * 108.27024 * 0.02562 * 16 15 14 18 18 C 1.46497 * 126.09169 * 180.02562 * 17 16 15 19 19 C 1.34329 * 107.81890 * 0.06413 * 17 16 15 20 20 C 1.50820 * 128.03348 * 179.76890 * 19 17 16 21 21 C 1.55156 * 102.93955 * 218.39122 * 5 3 2 22 22 C 1.54909 * 101.58662 * 35.50200 * 21 5 3 23 23 N 1.47020 * 109.88336 * 66.56215 * 3 2 1 24 24 C 1.36937 * 125.65082 * 298.37568 * 23 3 2 25 25 H 1.08000 * 119.99772 * 337.08580 * 24 23 3 26 26 C 1.38809 * 119.99882 * 157.07596 * 24 23 3 27 27 N 1.31623 * 119.99799 * 158.65440 * 26 24 23 28 28 Si 1.86796 * 120.00388 * 338.65283 * 26 24 23 29 29 H 1.48498 * 109.47345 * 90.85690 * 28 26 24 30 30 H 1.48505 * 109.47065 * 210.85900 * 28 26 24 31 31 H 1.48501 * 109.47090 * 330.85658 * 28 26 24 32 32 H 1.09000 * 109.46807 * 293.23584 * 1 2 3 33 33 H 1.08998 * 109.46741 * 53.23237 * 1 2 3 34 34 H 1.08993 * 109.47329 * 173.23734 * 1 2 3 35 35 H 1.09002 * 109.46989 * 240.00364 * 2 1 3 36 36 H 1.08992 * 109.47229 * 120.00414 * 2 1 3 37 37 H 0.97000 * 119.99638 * 19.97798 * 7 5 3 38 38 H 1.08998 * 109.46601 * 310.31151 * 12 10 8 39 39 H 1.09002 * 109.46120 * 70.28349 * 12 10 8 40 40 H 1.09000 * 109.68073 * 69.78261 * 13 12 10 41 41 H 1.08995 * 109.68143 * 190.29994 * 13 12 10 42 42 H 1.07999 * 125.95823 * 359.91871 * 15 14 13 43 43 H 1.09000 * 109.47856 * 90.01908 * 18 17 16 44 44 H 1.09004 * 109.47382 * 210.02376 * 18 17 16 45 45 H 1.09006 * 109.46808 * 330.01570 * 18 17 16 46 46 H 1.09001 * 109.68249 * 76.94459 * 20 19 17 47 47 H 1.09004 * 109.68459 * 316.39083 * 20 19 17 48 48 H 1.09000 * 111.00111 * 153.58078 * 21 5 3 49 49 H 1.08995 * 111.00218 * 277.42146 * 21 5 3 50 50 H 1.08997 * 110.36349 * 81.82285 * 22 21 5 51 51 H 1.08998 * 110.36502 * 204.15050 * 22 21 5 52 52 H 0.96996 * 120.00501 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6040 1.9921 -0.8343 5 6 3.5794 1.4549 -0.1106 6 1 4.0012 0.5119 0.2370 7 7 3.9979 1.7318 -1.4870 8 6 5.2390 1.3995 -1.8937 9 8 6.0097 0.8716 -1.1200 10 6 5.6698 1.6849 -3.3093 11 1 5.0150 1.1559 -4.0018 12 6 5.5840 3.1903 -3.5751 13 6 5.7706 3.4572 -5.0737 14 6 7.0046 2.7241 -5.5374 15 6 7.7274 2.9226 -6.7115 16 7 8.7273 2.0752 -6.7219 17 7 8.6671 1.3095 -5.5478 18 6 9.5981 0.2462 -5.1623 19 6 7.6031 1.7245 -4.8406 20 6 7.1132 1.2094 -3.5104 21 6 3.9860 2.6187 0.8316 22 6 2.9306 2.4900 1.9583 23 7 1.6882 2.0972 1.2685 24 6 0.4172 2.3070 1.7327 25 1 -0.4123 2.3349 1.0417 26 6 0.1949 2.4837 3.0914 27 7 -0.8991 3.0866 3.5064 28 14 1.4482 1.8659 4.3311 29 1 2.4283 2.9427 4.6228 30 1 0.7539 1.4756 5.5845 31 1 2.1588 0.6881 3.7715 32 1 -0.3633 0.4054 0.9443 33 1 -0.3633 0.6151 -0.8232 34 1 -0.3633 -1.0204 -0.1210 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 3.3816 2.1544 -2.1055 38 1 4.6086 3.5599 -3.2590 39 1 6.3657 3.7031 -3.0147 40 1 4.9009 3.0955 -5.6221 41 1 5.8929 4.5269 -5.2436 42 1 7.5026 3.6477 -7.4797 43 1 10.4187 0.6730 -4.5856 44 1 9.0744 -0.4933 -4.5565 45 1 9.9939 -0.2325 -6.0580 46 1 7.7423 1.6008 -2.7109 47 1 7.1459 0.1199 -3.5040 48 1 4.9933 2.4721 1.2212 49 1 3.9010 3.5797 0.3245 50 1 3.2284 1.7209 2.6708 51 1 2.7975 3.4462 2.4643 52 1 -1.0547 3.2098 4.4558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087702115.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:40 Heat of formation + Delta-G solvation = 34.262501 kcal Electronic energy + Delta-G solvation = -31220.941710 eV Core-core repulsion = 27221.299326 eV Total energy + Delta-G solvation = -3999.642384 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.52779 -41.16131 -39.63187 -37.11143 -35.63998 -34.57160 -34.16230 -33.85369 -31.47670 -31.13581 -30.38464 -28.60255 -27.47239 -26.34575 -24.87470 -23.84859 -23.39834 -22.27681 -21.83737 -21.50032 -20.73306 -19.62922 -18.86909 -18.33192 -17.59189 -17.27029 -16.94679 -16.51784 -16.18985 -16.00755 -15.47283 -15.26067 -15.04336 -14.87898 -14.81175 -14.60428 -14.32568 -14.27372 -14.04192 -13.86538 -13.79552 -13.66789 -13.47715 -13.20652 -13.03761 -12.94202 -12.74360 -12.61218 -12.57761 -12.33714 -12.03386 -11.95518 -11.81154 -11.72328 -11.59020 -11.49003 -11.43500 -11.23292 -10.74122 -10.67104 -10.21852 -9.98592 -9.12438 -8.95679 -8.11468 -5.37814 0.90284 1.31738 1.40962 1.47391 1.59393 1.66382 1.86988 2.15093 2.45416 3.10382 3.31353 3.50045 3.61538 3.69218 3.76063 3.78592 3.88254 4.02235 4.16786 4.23771 4.27464 4.33876 4.35429 4.42772 4.44366 4.48483 4.51082 4.58118 4.63249 4.66902 4.70058 4.71871 4.87663 4.95625 4.96346 5.00195 5.03932 5.10448 5.11809 5.18427 5.21946 5.22784 5.35827 5.41648 5.44200 5.63517 5.70721 5.78867 5.83272 6.12097 6.19334 6.61433 6.76316 6.82328 7.29628 7.60343 8.17416 9.07907 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.002309 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.558136 B =12121.919052 C =12295.013084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.156 3.844 4 H 0.062 0.938 5 C 0.150 3.850 6 H 0.083 0.917 7 N -0.702 5.702 8 C 0.523 3.477 9 O -0.579 6.579 10 C -0.088 4.088 11 H 0.124 0.876 12 C -0.108 4.108 13 C -0.032 4.032 14 C -0.252 4.252 15 C 0.048 3.952 16 N -0.339 5.339 17 N -0.377 5.377 18 C 0.090 3.910 19 C 0.079 3.921 20 C -0.030 4.030 21 C -0.126 4.126 22 C 0.104 3.896 23 N -0.614 5.614 24 C -0.200 4.200 25 H 0.076 0.924 26 C -0.034 4.034 27 N -0.955 5.955 28 Si 0.928 3.072 29 H -0.282 1.282 30 H -0.315 1.315 31 H -0.267 1.267 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.416 0.584 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.205 0.795 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.018 0.982 51 H 0.043 0.957 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.312 -2.971 -21.211 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C 0.050 3.950 4 H 0.080 0.920 5 C 0.043 3.957 6 H 0.101 0.899 7 N -0.353 5.353 8 C 0.311 3.689 9 O -0.459 6.459 10 C -0.109 4.109 11 H 0.142 0.858 12 C -0.146 4.146 13 C -0.070 4.070 14 C -0.263 4.263 15 C -0.136 4.136 16 N -0.161 5.161 17 N -0.158 5.158 18 C -0.050 4.050 19 C -0.050 4.050 20 C -0.069 4.069 21 C -0.165 4.165 22 C -0.021 4.021 23 N -0.339 5.339 24 C -0.329 4.329 25 H 0.093 0.907 26 C -0.229 4.229 27 N -0.603 5.603 28 Si 0.758 3.242 29 H -0.209 1.209 30 H -0.244 1.244 31 H -0.192 1.192 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.254 0.746 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.222 0.778 43 H 0.101 0.899 44 H 0.121 0.879 45 H 0.114 0.886 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.095 0.905 49 H 0.104 0.896 50 H 0.035 0.965 51 H 0.061 0.939 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 18.838 -3.839 -21.145 28.578 hybrid contribution -0.580 0.091 1.597 1.701 sum 18.258 -3.748 -19.548 27.010 Atomic orbital electron populations 1.21838 0.95990 1.00451 1.02388 1.21857 0.96564 0.96933 1.00667 1.21354 0.91676 0.92710 0.89258 0.91988 1.21702 0.93690 0.98108 0.82151 0.89870 1.45827 1.14923 1.62218 1.12367 1.20912 0.81124 0.76784 0.90121 1.90698 1.53413 1.44664 1.57126 1.21236 0.97197 0.99977 0.92528 0.85845 1.21627 1.03667 0.91939 0.97391 1.20005 0.93388 0.99807 0.93766 1.20274 1.04438 1.03932 0.97664 1.24044 0.92454 0.98365 0.98745 1.77463 1.24531 1.10015 1.04067 1.48474 1.22451 1.29676 1.15218 1.22122 0.92520 0.87719 1.02666 1.21069 0.90370 0.97511 0.96080 1.19986 0.95236 1.01315 0.90378 1.23015 0.97808 0.99508 0.96215 1.21990 0.87125 0.97461 0.95506 1.44873 1.01014 1.66994 1.21060 1.18500 0.83903 1.39633 0.90828 0.90652 1.25560 0.97663 1.01196 0.98443 1.69920 1.29738 1.45719 1.14887 0.86190 0.79184 0.79705 0.79082 1.20883 1.24361 1.19232 0.93013 0.93028 0.93031 0.90489 0.94342 0.74631 0.88948 0.92059 0.89402 0.89482 0.77798 0.89930 0.87884 0.88618 0.89878 0.89392 0.90495 0.89588 0.96482 0.93906 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.03 71.98 0.65 -4.52 16 2 C -0.12 -3.91 5.46 30.59 0.17 -3.74 16 3 C 0.16 5.17 2.99 45.34 0.14 5.31 16 4 H 0.06 1.91 7.69 -2.38 -0.02 1.89 16 5 C 0.15 4.26 2.76 46.18 0.13 4.39 16 6 H 0.08 2.64 7.41 -2.39 -0.02 2.62 16 7 N -0.70 -14.25 5.02 -436.90 -2.19 -16.45 16 8 C 0.52 10.99 7.15 87.66 0.63 11.61 16 9 O -0.58 -16.95 15.55 -3.06 -0.05 -17.00 16 10 C -0.09 -1.25 2.49 -11.40 -0.03 -1.27 16 11 H 0.12 1.33 8.11 -2.39 -0.02 1.31 16 12 C -0.11 -1.28 5.18 30.75 0.16 -1.13 16 13 C -0.03 -0.34 6.28 30.01 0.19 -0.15 16 14 C -0.25 -4.10 5.91 -20.14 -0.12 -4.22 16 15 C 0.05 0.83 12.00 85.06 1.02 1.85 16 16 N -0.34 -7.35 12.59 -57.27 -0.72 -8.07 16 17 N -0.38 -7.08 4.00 -356.01 -1.42 -8.51 16 18 C 0.09 1.04 11.32 127.77 1.45 2.49 16 19 C 0.08 1.39 6.73 41.64 0.28 1.67 16 20 C -0.03 -0.48 4.63 29.98 0.14 -0.34 16 21 C -0.13 -3.92 6.77 31.99 0.22 -3.70 16 22 C 0.10 4.25 4.77 86.85 0.41 4.67 16 23 N -0.61 -26.68 2.88 -668.24 -1.92 -28.60 16 24 C -0.20 -10.50 7.96 84.03 0.67 -9.83 16 25 H 0.08 4.22 7.12 -2.91 -0.02 4.20 16 26 C -0.03 -1.95 5.44 84.86 0.46 -1.49 16 27 N -0.96 -58.53 13.97 21.65 0.30 -58.22 16 28 Si 0.93 46.49 24.42 68.60 1.68 48.16 16 29 H -0.28 -13.69 6.95 99.48 0.69 -12.99 16 30 H -0.31 -16.22 7.11 99.48 0.71 -15.51 16 31 H -0.27 -12.97 6.39 99.48 0.64 -12.33 16 32 H 0.05 2.25 5.36 -2.39 -0.01 2.23 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.42 6.12 7.65 -92.71 -0.71 5.41 16 38 H 0.09 0.84 7.30 -2.39 -0.02 0.82 16 39 H 0.06 0.89 8.11 -2.39 -0.02 0.87 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.21 2.21 8.06 -2.91 -0.02 2.19 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 0.83 7.57 -2.39 -0.02 0.82 16 45 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.08 1.57 7.78 -2.39 -0.02 1.55 16 47 H 0.09 1.33 7.75 -2.38 -0.02 1.31 16 48 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 50 H 0.02 0.75 5.28 -2.39 -0.01 0.74 16 51 H 0.04 1.88 7.24 -2.39 -0.02 1.86 16 52 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -73.51 397.92 2.35 -71.16 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.13 Total: 15.93 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 6.55 Total: 1.60 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -5.96 Total: -119.85 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.05 Total: -17.00 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.68 Total: 48.16 kcal Total: -73.51 2.35 -71.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087702115.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.423 kcal (2) G-P(sol) polarization free energy of solvation -73.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds