Wall clock time and date at job start Wed Apr 1 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46516 * 2 1 4 4 H 1.08999 * 109.99949 * 56.18939 * 3 2 1 5 5 C 1.54319 * 109.88443 * 295.09119 * 3 2 1 6 6 H 1.09001 * 110.87516 * 336.82471 * 5 3 2 7 7 N 1.46497 * 110.72204 * 100.02977 * 5 3 2 8 8 C 1.34777 * 119.99980 * 199.97700 * 7 5 3 9 9 O 1.21282 * 120.00095 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99670 * 179.72196 * 8 7 5 11 11 H 1.08998 * 109.47018 * 60.28022 * 10 8 7 12 12 C 1.53108 * 109.46742 * 300.28779 * 10 8 7 13 13 C 1.53366 * 109.51247 * 169.70747 * 12 10 8 14 14 C 1.50840 * 108.37254 * 49.95240 * 13 12 10 15 15 C 1.39303 * 127.89427 * 163.34507 * 14 13 12 16 16 N 1.31079 * 108.07610 * 180.15898 * 15 14 13 17 17 N 1.40290 * 108.26658 * 0.02562 * 16 15 14 18 18 C 1.46506 * 126.08781 * 179.97438 * 17 16 15 19 19 C 1.34322 * 107.82603 * 359.93354 * 17 16 15 20 20 C 1.50826 * 128.04149 * 180.11740 * 19 17 16 21 21 C 1.55161 * 102.94346 * 218.39059 * 5 3 2 22 22 C 1.54905 * 101.57845 * 35.50258 * 21 5 3 23 23 N 1.47023 * 109.88258 * 177.28260 * 3 2 1 24 24 C 1.36937 * 125.64851 * 298.39564 * 23 3 2 25 25 H 1.08001 * 120.00099 * 348.06591 * 24 23 3 26 26 C 1.38806 * 120.00382 * 168.06511 * 24 23 3 27 27 N 1.31628 * 119.99863 * 359.97438 * 26 24 23 28 28 Si 1.86798 * 120.00398 * 180.02562 * 26 24 23 29 29 H 1.48494 * 109.47120 * 359.97438 * 28 26 24 30 30 H 1.48503 * 109.47436 * 119.99906 * 28 26 24 31 31 H 1.48499 * 109.47022 * 239.99982 * 28 26 24 32 32 H 1.09008 * 109.46276 * 185.49514 * 1 2 3 33 33 H 1.08994 * 109.47481 * 305.49047 * 1 2 3 34 34 H 1.08995 * 109.47437 * 65.49934 * 1 2 3 35 35 H 1.08993 * 109.47426 * 240.00246 * 2 1 3 36 36 H 1.09000 * 109.47070 * 119.99632 * 2 1 3 37 37 H 0.96998 * 120.00370 * 19.97467 * 7 5 3 38 38 H 1.09006 * 109.46649 * 289.72642 * 12 10 8 39 39 H 1.08997 * 109.46366 * 49.70230 * 12 10 8 40 40 H 1.08996 * 109.68402 * 290.23148 * 13 12 10 41 41 H 1.08998 * 109.71646 * 169.68734 * 13 12 10 42 42 H 1.07997 * 125.96284 * 0.15905 * 15 14 13 43 43 H 1.08996 * 109.47070 * 269.97103 * 18 17 16 44 44 H 1.08999 * 109.46941 * 29.97735 * 18 17 16 45 45 H 1.09004 * 109.47170 * 149.97016 * 18 17 16 46 46 H 1.09001 * 109.67804 * 43.72239 * 20 19 17 47 47 H 1.09003 * 109.68040 * 283.16830 * 20 19 17 48 48 H 1.09005 * 111.00234 * 153.57626 * 21 5 3 49 49 H 1.08999 * 111.00595 * 277.38696 * 21 5 3 50 50 H 1.08999 * 110.37149 * 81.83268 * 22 21 5 51 51 H 1.09011 * 110.36383 * 204.15382 * 22 21 5 52 52 H 0.96997 * 120.00029 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6267 1.9840 0.8510 5 6 1.6346 2.1425 -1.3142 6 1 1.4541 1.4126 -2.1034 7 7 0.4536 2.9849 -1.1100 8 6 -0.2989 3.3574 -2.1643 9 8 0.0019 2.9956 -3.2821 10 6 -1.5174 4.2188 -1.9534 11 1 -1.2199 5.1643 -1.4999 12 6 -2.4996 3.4957 -1.0279 13 6 -3.6126 4.4628 -0.6060 14 6 -4.1619 5.1251 -1.8450 15 6 -5.3635 5.8158 -1.9847 16 7 -5.4543 6.2270 -3.2260 17 7 -4.3063 5.8059 -3.9138 18 6 -4.0066 6.0548 -5.3261 19 6 -3.5305 5.1347 -3.0467 20 6 -2.1922 4.4887 -3.3044 21 6 2.8778 3.0106 -1.6434 22 6 4.0312 2.1011 -1.1515 23 7 3.5086 1.4538 0.0655 24 6 4.2658 0.9462 1.0874 25 1 3.7970 0.6658 2.0191 26 6 5.6358 0.7921 0.9259 27 7 6.2071 1.1334 -0.2097 28 14 6.6686 0.0991 2.3197 29 1 5.7937 -0.2044 3.4805 30 1 7.3402 -1.1454 1.8667 31 1 7.6930 1.0969 2.7200 32 1 -0.3632 -1.0231 0.0984 33 1 -0.3634 0.5966 0.8367 34 1 -0.3634 0.4261 -0.9351 35 1 1.8934 -0.5137 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 0.2131 3.2746 -0.2161 38 1 -2.9361 2.6465 -1.5538 39 1 -1.9711 3.1419 -0.1427 40 1 -3.2067 5.2193 0.0654 41 1 -4.4065 3.9121 -0.1015 42 1 -6.0930 5.9833 -1.2062 43 1 -4.4056 5.2408 -5.9311 44 1 -4.4641 6.9949 -5.6344 45 1 -2.9268 6.1141 -5.4634 46 1 -1.5695 5.1584 -3.8977 47 1 -2.3348 3.5494 -3.8388 48 1 2.9541 3.1932 -2.7153 49 1 2.8564 3.9494 -1.0899 50 1 4.2720 1.3522 -1.9060 51 1 4.9114 2.6991 -0.9150 52 1 7.1645 1.0261 -0.3225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087702116.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:46 Heat of formation + Delta-G solvation = 50.398791 kcal Electronic energy + Delta-G solvation = -31287.039416 eV Core-core repulsion = 27288.096754 eV Total energy + Delta-G solvation = -3998.942662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.79903 -39.96410 -37.94992 -36.24471 -34.09602 -33.87499 -32.78135 -31.74878 -30.51406 -30.02516 -28.86962 -26.86591 -26.60149 -24.82494 -23.82601 -22.76413 -22.03870 -21.17158 -20.48697 -20.12907 -19.46683 -18.87429 -17.36446 -16.87891 -16.46736 -15.99611 -15.75504 -15.04220 -14.81543 -14.62821 -14.38785 -14.18291 -13.93599 -13.83895 -13.66917 -13.49775 -13.18709 -13.15475 -13.00029 -12.72892 -12.63660 -12.08715 -12.02583 -11.96768 -11.80131 -11.66455 -11.17380 -11.13484 -10.99221 -10.91962 -10.85336 -10.72845 -10.62435 -10.45934 -10.27636 -10.06924 -9.77599 -9.66269 -9.55241 -9.46625 -8.67605 -8.58676 -8.41980 -6.84939 -5.76168 -3.12756 1.63695 2.23956 2.57429 2.74292 3.28742 3.37211 3.43208 3.45190 4.22706 4.30222 4.42993 4.46338 4.59008 4.76530 4.84259 4.86160 5.02610 5.09492 5.10463 5.14204 5.25329 5.33470 5.34017 5.39768 5.50461 5.53215 5.62182 5.67196 5.69864 5.72612 5.78734 5.82225 5.85071 5.99405 6.03550 6.08258 6.21310 6.29287 6.39090 6.44435 6.45240 6.55413 6.66790 6.71575 6.78505 6.92352 7.12410 7.48470 7.51257 7.57731 7.70902 7.78091 8.24444 8.38139 9.16268 9.77366 10.43997 11.34806 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.002257 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.305835 B =12404.574844 C =12931.366485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.138 3.862 6 H 0.091 0.909 7 N -0.711 5.711 8 C 0.518 3.482 9 O -0.544 6.544 10 C -0.100 4.100 11 H 0.102 0.898 12 C -0.111 4.111 13 C -0.037 4.037 14 C -0.245 4.245 15 C 0.054 3.946 16 N -0.305 5.305 17 N -0.368 5.368 18 C 0.099 3.901 19 C 0.091 3.909 20 C -0.035 4.035 21 C -0.156 4.156 22 C 0.172 3.828 23 N -0.595 5.595 24 C -0.225 4.225 25 H 0.076 0.924 26 C -0.006 4.006 27 N -0.918 5.918 28 Si 0.910 3.090 29 H -0.279 1.279 30 H -0.290 1.290 31 H -0.291 1.291 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.398 0.602 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.182 0.818 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.060 0.940 50 H 0.025 0.975 51 H 0.079 0.921 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.824 8.495 -4.257 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.034 3.966 6 H 0.109 0.891 7 N -0.361 5.361 8 C 0.303 3.697 9 O -0.421 6.421 10 C -0.122 4.122 11 H 0.120 0.880 12 C -0.149 4.149 13 C -0.075 4.075 14 C -0.256 4.256 15 C -0.130 4.130 16 N -0.126 5.126 17 N -0.149 5.149 18 C -0.043 4.043 19 C -0.038 4.038 20 C -0.075 4.075 21 C -0.196 4.196 22 C 0.047 3.953 23 N -0.319 5.319 24 C -0.354 4.354 25 H 0.094 0.906 26 C -0.202 4.202 27 N -0.564 5.564 28 Si 0.741 3.259 29 H -0.205 1.205 30 H -0.217 1.217 31 H -0.218 1.218 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.232 0.768 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.199 0.801 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.043 0.957 51 H 0.097 0.903 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.041 8.853 -6.041 23.613 hybrid contribution 0.948 -0.651 1.581 1.955 sum -20.093 8.202 -4.461 22.156 Atomic orbital electron populations 1.21770 0.97209 1.00520 1.00915 1.22018 0.93630 0.99171 1.02368 1.21061 0.87022 0.93326 0.93255 0.94720 1.22101 0.83543 0.92357 0.98602 0.89064 1.46074 1.28166 1.52218 1.09655 1.20343 0.83849 0.80560 0.84903 1.90697 1.71930 1.55829 1.23643 1.21300 0.93796 1.00069 0.96997 0.87998 1.21623 0.95893 0.98388 0.99000 1.19964 0.97033 0.97043 0.93445 1.19915 0.97920 1.11617 0.96172 1.23561 0.97492 0.97500 0.94468 1.77515 1.04722 1.23864 1.06524 1.48181 1.15102 1.42133 1.09457 1.21882 1.02506 1.03365 0.76534 1.20923 0.95234 0.97148 0.90503 1.20085 0.89086 1.01090 0.97194 1.23420 0.96792 0.99049 1.00304 1.21489 0.93405 0.92966 0.87470 1.44469 0.98358 1.68338 1.20754 1.18997 0.89118 1.35335 0.91923 0.90573 1.24875 0.97032 1.01179 0.97149 1.69938 1.10009 1.52747 1.23749 0.86072 0.80313 0.78452 0.81077 1.20463 1.21721 1.21774 0.93719 0.93404 0.93278 0.92405 0.91772 0.76785 0.90955 0.90511 0.91005 0.90672 0.80143 0.90620 0.89283 0.89322 0.89739 0.88596 0.91959 0.92098 0.95711 0.90264 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.57 37.16 0.36 -1.66 16 2 C -0.13 -2.34 5.41 -26.73 -0.14 -2.49 16 3 C 0.16 3.05 2.94 -66.95 -0.20 2.85 16 4 H 0.04 0.64 7.69 -51.93 -0.40 0.24 16 5 C 0.14 2.35 1.92 -66.10 -0.13 2.23 16 6 H 0.09 1.71 7.34 -51.93 -0.38 1.32 16 7 N -0.71 -9.27 4.75 -52.03 -0.25 -9.52 16 8 C 0.52 6.72 7.15 -10.98 -0.08 6.64 16 9 O -0.54 -9.10 15.55 5.56 0.09 -9.01 16 10 C -0.10 -0.94 2.50 -91.50 -0.23 -1.17 16 11 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 12 C -0.11 -0.90 5.17 -26.49 -0.14 -1.03 16 13 C -0.04 -0.27 6.28 -27.62 -0.17 -0.45 16 14 C -0.24 -2.38 5.91 -105.05 -0.62 -3.00 16 15 C 0.05 0.54 12.00 -17.48 -0.21 0.33 16 16 N -0.31 -3.58 12.59 30.55 0.38 -3.19 16 17 N -0.37 -3.83 4.00 -63.87 -0.26 -4.09 16 18 C 0.10 0.67 11.32 59.85 0.68 1.34 16 19 C 0.09 0.93 6.73 -82.33 -0.55 0.37 16 20 C -0.04 -0.34 4.63 -27.61 -0.13 -0.47 16 21 C -0.16 -2.96 6.77 -24.58 -0.17 -3.12 16 22 C 0.17 4.06 5.46 -2.53 -0.01 4.05 16 23 N -0.59 -14.28 3.13 -162.58 -0.51 -14.79 16 24 C -0.23 -5.97 9.77 -15.06 -0.15 -6.12 16 25 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 26 C -0.01 -0.15 5.47 -17.43 -0.10 -0.25 16 27 N -0.92 -26.28 10.47 55.49 0.58 -25.70 16 28 Si 0.91 21.54 29.55 -169.99 -5.02 16.51 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 31 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 32 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.67 7.38 -51.93 -0.38 0.29 16 35 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.06 1.23 7.91 -51.93 -0.41 0.82 16 37 H 0.40 4.28 7.63 -40.82 -0.31 3.97 16 38 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 39 H 0.08 0.54 7.29 -51.93 -0.38 0.16 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.47 7.57 -51.93 -0.39 0.07 16 46 H 0.08 0.79 7.76 -51.93 -0.40 0.39 16 47 H 0.10 1.02 7.79 -51.93 -0.40 0.61 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 50 H 0.02 0.64 8.11 -51.93 -0.42 0.22 16 51 H 0.08 2.09 6.73 -51.92 -0.35 1.75 16 52 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 407.22 15.07 6.14 6.14 Total: -1.00 -32.77 407.22 -9.68 -42.46 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -8.85 Total: 3.12 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.99 Total: -1.94 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.05 Total: -57.28 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.77 -9.68 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087702116.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.857 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds