Wall clock time and date at job start Wed Apr 1 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47195 * 2 1 4 4 H 1.09004 * 109.87046 * 305.49819 * 3 2 1 5 5 C 1.54326 * 109.88321 * 184.32526 * 3 2 1 6 6 H 1.09005 * 110.71674 * 336.75553 * 5 3 2 7 7 N 1.46495 * 110.71961 * 100.02500 * 5 3 2 8 8 C 1.34785 * 120.00040 * 205.00083 * 7 5 3 9 9 O 1.21278 * 119.99835 * 359.97438 * 8 7 5 10 10 C 1.50695 * 120.00051 * 180.02562 * 8 7 5 11 11 H 1.09007 * 109.43294 * 299.90429 * 10 8 7 12 12 C 1.53115 * 109.43440 * 59.76108 * 10 8 7 13 13 C 1.53493 * 109.30676 * 189.99018 * 12 10 8 14 14 C 1.50713 * 108.05899 * 311.30061 * 13 12 10 15 15 C 1.33861 * 128.68000 * 195.79621 * 14 13 12 16 16 N 1.34423 * 107.79845 * 179.84122 * 15 14 13 17 17 C 1.30779 * 109.32064 * 359.97438 * 16 15 14 18 18 C 1.50710 * 125.72431 * 180.02562 * 17 16 15 19 19 N 1.34415 * 108.55801 * 0.06618 * 17 16 15 20 20 C 1.46463 * 128.45010 * 179.82296 * 19 17 16 21 21 C 1.55157 * 102.94327 * 218.39008 * 5 3 2 22 22 C 1.54909 * 101.57902 * 35.50013 * 21 5 3 23 23 N 1.47014 * 109.88313 * 66.51631 * 3 2 1 24 24 C 1.36933 * 125.64819 * 298.39829 * 23 3 2 25 25 H 1.07998 * 120.00076 * 338.62146 * 24 23 3 26 26 C 1.38814 * 120.00141 * 158.63057 * 24 23 3 27 27 N 1.31621 * 119.99936 * 159.21040 * 26 24 23 28 28 Si 1.86796 * 119.99923 * 339.21034 * 26 24 23 29 29 H 1.48502 * 109.47431 * 84.80213 * 28 26 24 30 30 H 1.48500 * 109.47065 * 204.80155 * 28 26 24 31 31 H 1.48499 * 109.47274 * 324.79784 * 28 26 24 32 32 H 1.09001 * 109.47196 * 52.12465 * 1 2 3 33 33 H 1.09008 * 109.47405 * 172.12368 * 1 2 3 34 34 H 1.09000 * 109.47104 * 292.12499 * 1 2 3 35 35 H 1.08996 * 109.47129 * 120.00453 * 2 1 3 36 36 H 1.09001 * 109.47037 * 240.00134 * 2 1 3 37 37 H 0.97000 * 120.00436 * 24.99933 * 7 5 3 38 38 H 1.09001 * 109.49608 * 309.93649 * 12 10 8 39 39 H 1.08994 * 109.49961 * 70.03897 * 12 10 8 40 40 H 1.09000 * 109.74638 * 191.65878 * 13 12 10 41 41 H 1.08998 * 109.74573 * 70.94445 * 13 12 10 42 42 H 1.08003 * 126.10149 * 359.84226 * 15 14 13 43 43 H 1.09000 * 109.46555 * 270.00401 * 18 17 16 44 44 H 1.09003 * 109.46596 * 29.99659 * 18 17 16 45 45 H 1.08995 * 109.46868 * 150.00341 * 18 17 16 46 46 H 1.09002 * 109.59937 * 77.53021 * 20 19 17 47 47 H 1.08999 * 109.73217 * 317.13809 * 20 19 17 48 48 H 1.08995 * 111.00384 * 277.42677 * 21 5 3 49 49 H 1.08993 * 111.00228 * 153.57610 * 21 5 3 50 50 H 1.09005 * 110.36788 * 204.15129 * 22 21 5 51 51 H 1.09007 * 110.45714 * 81.87870 * 22 21 5 52 52 H 0.97007 * 119.99854 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9902 -0.8346 5 6 3.5793 1.4549 -0.1095 6 1 3.9984 0.5115 0.2404 7 7 3.9988 1.7315 -1.4855 8 6 5.2023 1.3088 -1.9210 9 8 5.9381 0.7000 -1.1735 10 6 5.6341 1.5938 -3.3364 11 1 4.9285 1.1362 -4.0299 12 6 5.6629 3.1075 -3.5652 13 6 5.8566 3.3909 -5.0613 14 6 7.0060 2.5484 -5.5515 15 6 7.7085 2.6694 -6.6845 16 7 8.6391 1.6995 -6.6966 17 6 8.5332 0.9846 -5.6067 18 6 9.3946 -0.1972 -5.2422 19 7 7.5265 1.4799 -4.8664 20 6 7.0325 1.0100 -3.5701 21 6 3.9853 2.6189 0.8327 22 6 2.9290 2.4906 1.9585 23 7 1.6872 2.0975 1.2680 24 6 0.4158 2.3071 1.7313 25 1 -0.4163 2.3097 1.0429 26 6 0.1964 2.5164 3.0860 27 7 -0.9069 3.1094 3.4900 28 14 1.4671 1.9562 4.3354 29 1 2.5103 3.0027 4.4837 30 1 0.8059 1.7272 5.6452 31 1 2.0952 0.6935 3.8705 32 1 -0.3633 0.6309 -0.8112 33 1 -0.3634 -1.0180 -0.1408 34 1 -0.3633 0.3870 0.9520 35 1 1.8933 -0.5139 0.8899 36 1 1.8933 -0.5138 -0.8900 37 1 3.4105 2.2187 -2.0834 38 1 4.7216 3.5439 -3.2312 39 1 6.4874 3.5449 -3.0024 40 1 6.0842 4.4465 -5.2097 41 1 4.9495 3.1292 -5.6061 42 1 7.5549 3.4136 -7.4520 43 1 8.9423 -1.1098 -5.6304 44 1 10.3868 -0.0707 -5.6753 45 1 9.4774 -0.2655 -4.1576 46 1 7.7056 1.3426 -2.7799 47 1 6.9780 -0.0787 -3.5697 48 1 3.9006 3.5799 0.3253 49 1 4.9923 2.4724 1.2231 50 1 2.7955 3.4469 2.4643 51 1 3.2252 1.7224 2.6730 52 1 -1.0601 3.2560 4.4367 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087703173.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:22 Heat of formation + Delta-G solvation = 39.757537 kcal Electronic energy + Delta-G solvation = -31310.444396 eV Core-core repulsion = 27311.040295 eV Total energy + Delta-G solvation = -3999.404102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.67601 -40.30056 -38.37029 -36.53178 -34.48415 -33.62274 -32.63690 -32.28091 -31.48289 -30.31417 -29.33951 -27.27539 -26.71287 -25.23523 -24.06833 -22.83077 -22.26827 -21.48701 -20.82143 -20.46910 -19.49883 -19.20017 -17.54211 -17.11690 -16.72276 -16.32631 -16.00112 -15.36014 -15.12336 -15.04642 -14.74128 -14.35168 -14.15121 -13.87873 -13.78826 -13.66388 -13.30991 -13.24958 -13.14453 -12.90145 -12.69127 -12.55904 -12.31971 -12.26979 -12.15871 -11.97405 -11.59969 -11.49953 -11.42084 -11.19186 -11.01805 -10.74099 -10.48664 -10.39197 -10.17445 -10.16381 -10.02082 -9.88506 -9.74069 -9.37779 -9.00448 -8.69871 -8.43570 -7.12894 -6.01888 -3.34639 1.77093 2.35074 2.39020 2.88502 3.03998 3.29869 3.44400 3.45617 3.87046 4.14699 4.18436 4.24538 4.39521 4.48038 4.63947 4.75710 4.79562 4.87994 4.92051 5.02929 5.04418 5.10638 5.16477 5.18898 5.21540 5.26331 5.37369 5.39137 5.49266 5.52298 5.62824 5.66073 5.70117 5.78337 5.83541 5.98352 6.04953 6.13344 6.18986 6.28078 6.43301 6.51660 6.51833 6.52807 6.63477 6.65741 6.92023 6.94363 7.23039 7.36577 7.64884 7.85963 8.02582 8.23791 8.74381 9.60275 10.08312 11.13386 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022714 B = 0.002324 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.423111 B =12047.203745 C =12163.754373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.159 3.841 4 H 0.046 0.954 5 C 0.132 3.868 6 H 0.098 0.902 7 N -0.709 5.709 8 C 0.524 3.476 9 O -0.540 6.540 10 C -0.120 4.120 11 H 0.109 0.891 12 C -0.117 4.117 13 C -0.043 4.043 14 C -0.030 4.030 15 C -0.022 4.022 16 N -0.495 5.495 17 C 0.208 3.792 18 C -0.069 4.069 19 N -0.451 5.451 20 C 0.124 3.876 21 C -0.139 4.139 22 C 0.111 3.889 23 N -0.599 5.599 24 C -0.236 4.236 25 H 0.097 0.903 26 C 0.023 3.977 27 N -0.907 5.907 28 Si 0.881 3.119 29 H -0.286 1.286 30 H -0.303 1.303 31 H -0.275 1.275 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.401 0.599 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.169 0.831 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.062 0.938 51 H 0.028 0.972 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.874 -2.445 -17.326 22.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.052 3.948 4 H 0.064 0.936 5 C 0.028 3.972 6 H 0.116 0.884 7 N -0.359 5.359 8 C 0.308 3.692 9 O -0.417 6.417 10 C -0.142 4.142 11 H 0.127 0.873 12 C -0.155 4.155 13 C -0.081 4.081 14 C -0.144 4.144 15 C -0.170 4.170 16 N -0.215 5.215 17 C -0.053 4.053 18 C -0.128 4.128 19 N -0.135 5.135 20 C 0.001 3.999 21 C -0.179 4.179 22 C -0.014 4.014 23 N -0.325 5.325 24 C -0.363 4.363 25 H 0.115 0.885 26 C -0.175 4.175 27 N -0.550 5.550 28 Si 0.712 3.288 29 H -0.213 1.213 30 H -0.231 1.231 31 H -0.201 1.201 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.236 0.764 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.186 0.814 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.045 0.955 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.729 -3.015 -17.083 23.416 hybrid contribution -0.303 0.007 1.218 1.255 sum 15.425 -3.009 -15.865 22.332 Atomic orbital electron populations 1.21942 0.95288 0.99318 1.04500 1.21911 0.97333 0.97262 0.99964 1.21183 0.89848 0.92645 0.91173 0.93611 1.22168 0.95759 0.99330 0.79972 0.88367 1.45987 1.17970 1.57526 1.14427 1.20073 0.81829 0.78918 0.88355 1.90728 1.52896 1.40887 1.57189 1.21581 0.97614 0.98844 0.96142 0.87335 1.21697 1.04203 0.92693 0.96940 1.20222 0.94517 0.98769 0.94594 1.21138 1.02506 0.94578 0.96148 1.21814 0.96215 1.00884 0.98060 1.70452 1.23942 1.07264 1.19793 1.23125 0.92731 1.00098 0.89392 1.20192 0.98435 0.92101 1.02028 1.45273 1.26450 1.24284 1.17447 1.21694 0.94748 1.00669 0.82759 1.23123 0.99005 0.98248 0.97516 1.21964 0.86390 0.98914 0.94125 1.44772 1.01833 1.66162 1.19695 1.18586 0.82522 1.43302 0.91872 0.88532 1.25053 0.96180 0.99576 0.96739 1.69810 1.26929 1.42740 1.15559 0.87000 0.81005 0.79740 0.81094 1.21272 1.23102 1.20088 0.93946 0.94922 0.88820 0.92436 0.93928 0.76369 0.89557 0.90527 0.88927 0.89607 0.81390 0.90178 0.89172 0.90747 0.88525 0.88416 0.90917 0.91335 0.91972 0.95492 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.96 37.15 0.33 -2.40 16 2 C -0.13 -2.13 5.45 -26.73 -0.15 -2.28 16 3 C 0.16 2.75 2.99 -66.96 -0.20 2.55 16 4 H 0.05 0.77 7.72 -51.93 -0.40 0.37 16 5 C 0.13 1.98 2.84 -66.10 -0.19 1.80 16 6 H 0.10 1.62 7.26 -51.93 -0.38 1.24 16 7 N -0.71 -7.94 5.00 -52.03 -0.26 -8.20 16 8 C 0.52 5.85 7.15 -10.98 -0.08 5.78 16 9 O -0.54 -8.00 15.48 5.56 0.09 -7.91 16 10 C -0.12 -0.96 2.52 -91.54 -0.23 -1.19 16 11 H 0.11 0.76 8.11 -51.93 -0.42 0.34 16 12 C -0.12 -0.80 5.23 -26.42 -0.14 -0.93 16 13 C -0.04 -0.27 6.31 -27.62 -0.17 -0.45 16 14 C -0.03 -0.28 6.57 -81.73 -0.54 -0.82 16 15 C -0.02 -0.24 11.84 -17.95 -0.21 -0.45 16 16 N -0.50 -6.18 11.27 -11.02 -0.12 -6.30 16 17 C 0.21 2.22 7.94 -155.75 -1.24 0.99 16 18 C -0.07 -0.50 10.24 36.01 0.37 -0.13 16 19 N -0.45 -4.40 3.13 -109.40 -0.34 -4.75 16 20 C 0.12 1.08 5.31 -3.89 -0.02 1.06 16 21 C -0.14 -2.23 6.77 -24.58 -0.17 -2.40 16 22 C 0.11 2.27 4.71 -2.53 -0.01 2.26 16 23 N -0.60 -13.03 2.91 -162.57 -0.47 -13.50 16 24 C -0.24 -6.07 8.04 -15.06 -0.12 -6.19 16 25 H 0.10 2.63 7.03 -52.49 -0.37 2.26 16 26 C 0.02 0.65 5.44 -17.43 -0.09 0.55 16 27 N -0.91 -26.68 13.97 55.49 0.78 -25.90 16 28 Si 0.88 21.80 24.28 -169.99 -4.13 17.67 16 29 H -0.29 -6.86 6.59 56.52 0.37 -6.49 16 30 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 31 H -0.28 -6.74 6.64 56.52 0.38 -6.36 16 32 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.09 2.01 5.43 -51.93 -0.28 1.73 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.40 3.55 7.69 -40.82 -0.31 3.24 16 38 H 0.09 0.49 7.30 -51.93 -0.38 0.11 16 39 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.45 7.95 -51.93 -0.41 0.03 16 46 H 0.10 0.91 7.82 -51.93 -0.41 0.51 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 49 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.06 1.36 6.88 -51.93 -0.36 1.00 16 51 H 0.03 0.59 5.45 -51.93 -0.28 0.31 16 52 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -32.69 397.38 -10.02 -42.70 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -8.69 Total: 2.45 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.86 Total: -2.24 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.42 Total: -58.66 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.91 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.13 Total: 17.67 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.69 -10.02 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087703173.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.462 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds