Wall clock time and date at job start Wed Apr 1 2020 05:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47181 * 2 1 4 4 H 1.08997 * 109.87163 * 55.83962 * 3 2 1 5 5 C 1.54317 * 109.88256 * 294.81703 * 3 2 1 6 6 H 1.09004 * 110.72014 * 336.75585 * 5 3 2 7 7 N 1.46495 * 110.72148 * 100.02853 * 5 3 2 8 8 C 1.34775 * 120.00128 * 199.97712 * 7 5 3 9 9 O 1.21277 * 120.00125 * 359.97438 * 8 7 5 10 10 C 1.50709 * 120.00036 * 179.97438 * 8 7 5 11 11 H 1.08996 * 109.43028 * 60.09964 * 10 8 7 12 12 C 1.53114 * 109.42963 * 300.24624 * 10 8 7 13 13 C 1.53490 * 109.30954 * 170.02253 * 12 10 8 14 14 C 1.50711 * 108.05532 * 48.70873 * 13 12 10 15 15 C 1.33864 * 128.67648 * 164.16037 * 14 13 12 16 16 N 1.34424 * 107.79385 * 180.14786 * 15 14 13 17 17 C 1.30790 * 109.32569 * 359.97438 * 16 15 14 18 18 C 1.50693 * 125.72505 * 179.97438 * 17 16 15 19 19 N 1.34410 * 108.54687 * 359.95468 * 17 16 15 20 20 C 1.46479 * 128.43915 * 180.13232 * 19 17 16 21 21 C 1.55156 * 102.94477 * 218.39167 * 5 3 2 22 22 C 1.54910 * 101.61373 * 35.48141 * 21 5 3 23 23 N 1.47022 * 109.88142 * 177.00767 * 3 2 1 24 24 C 1.36941 * 125.65157 * 298.32364 * 23 3 2 25 25 H 1.08003 * 119.99608 * 345.36147 * 24 23 3 26 26 C 1.38805 * 120.00339 * 165.37385 * 24 23 3 27 27 N 1.31620 * 120.00060 * 359.97438 * 26 24 23 28 28 Si 1.86805 * 120.00233 * 179.97438 * 26 24 23 29 29 H 1.48505 * 109.46685 * 359.97438 * 28 26 24 30 30 H 1.48500 * 109.47394 * 119.99227 * 28 26 24 31 31 H 1.48500 * 109.46849 * 239.99469 * 28 26 24 32 32 H 1.08993 * 109.47353 * 65.56467 * 1 2 3 33 33 H 1.08996 * 109.47516 * 185.56736 * 1 2 3 34 34 H 1.09008 * 109.47122 * 305.56570 * 1 2 3 35 35 H 1.08999 * 109.47172 * 240.00104 * 2 1 3 36 36 H 1.09005 * 109.47034 * 119.99950 * 2 1 3 37 37 H 0.97001 * 120.00269 * 19.96772 * 7 5 3 38 38 H 1.08997 * 109.50060 * 289.96890 * 12 10 8 39 39 H 1.09000 * 109.49525 * 50.06875 * 12 10 8 40 40 H 1.09003 * 109.73988 * 289.07046 * 13 12 10 41 41 H 1.09000 * 109.74916 * 168.35414 * 13 12 10 42 42 H 1.07997 * 126.10017 * 0.17757 * 15 14 13 43 43 H 1.09004 * 109.47281 * 269.95378 * 18 17 16 44 44 H 1.09000 * 109.47472 * 29.95531 * 18 17 16 45 45 H 1.09001 * 109.46774 * 149.95866 * 18 17 16 46 46 H 1.09000 * 109.59653 * 42.95343 * 20 19 17 47 47 H 1.08997 * 109.72844 * 282.55363 * 20 19 17 48 48 H 1.09000 * 111.01025 * 153.57440 * 21 5 3 49 49 H 1.08998 * 111.00343 * 277.39623 * 21 5 3 50 50 H 1.08998 * 110.37056 * 81.85455 * 22 21 5 51 51 H 1.09007 * 110.36507 * 204.17455 * 22 21 5 52 52 H 0.96995 * 120.00334 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6208 1.9837 0.8482 5 6 1.6407 2.1404 -1.3172 6 1 1.4655 1.4071 -2.1044 7 7 0.4588 2.9832 -1.1196 8 6 -0.2889 3.3541 -2.1778 9 8 0.0169 2.9905 -3.2937 10 6 -1.5050 4.2207 -1.9745 11 1 -1.2054 5.1654 -1.5209 12 6 -2.4927 3.5035 -1.0501 13 6 -3.6070 4.4778 -0.6441 14 6 -4.1189 5.1486 -1.8929 15 6 -5.2526 5.8388 -2.0670 16 7 -5.2912 6.2492 -3.3465 17 6 -4.2171 5.8343 -3.9668 18 6 -3.8844 6.0866 -5.4147 19 7 -3.4597 5.1456 -3.0959 20 6 -2.1683 4.4946 -3.3285 21 6 2.8854 3.0078 -1.6421 22 6 4.0371 2.0998 -1.1434 23 7 3.5084 1.4537 0.0722 24 6 4.2609 0.9489 1.0989 25 1 3.7951 0.7122 2.0441 26 6 5.6224 0.7418 0.9250 27 7 6.1900 1.0300 -0.2270 28 14 6.6490 0.0539 2.3259 29 1 5.7796 -0.1842 3.5061 30 1 7.2704 -1.2265 1.9020 31 1 7.7131 1.0261 2.6834 32 1 -0.3634 0.4251 -0.9355 33 1 -0.3634 -1.0227 0.0997 34 1 -0.3634 0.5978 0.8360 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 0.2143 3.2742 -0.2272 38 1 -2.9272 2.6514 -1.5727 39 1 -1.9702 3.1564 -0.1587 40 1 -3.2094 5.2275 0.0400 41 1 -4.4169 3.9308 -0.1615 42 1 -6.0021 6.0320 -1.3138 43 1 -4.2898 5.2807 -6.0265 44 1 -4.3206 7.0351 -5.7279 45 1 -2.8020 6.1264 -5.5371 46 1 -1.5309 5.1489 -3.9231 47 1 -2.3205 3.5535 -3.8569 48 1 2.9667 3.1887 -2.7139 49 1 2.8617 3.9474 -1.0901 50 1 4.2819 1.3498 -1.8955 51 1 4.9158 2.6988 -0.9038 52 1 7.1413 0.8850 -0.3486 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087703174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:27 Heat of formation + Delta-G solvation = 33.701082 kcal Electronic energy + Delta-G solvation = -31381.820338 eV Core-core repulsion = 27382.153608 eV Total energy + Delta-G solvation = -3999.666729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.63061 -40.17526 -38.06211 -36.43174 -34.26795 -33.57541 -32.85890 -31.95656 -31.31903 -30.21302 -29.00782 -26.77564 -26.66390 -25.11013 -24.14155 -22.87905 -22.16655 -21.21528 -20.52365 -20.25423 -19.54244 -19.16657 -17.42217 -16.93659 -16.67962 -16.12670 -15.93906 -15.24828 -14.91563 -14.73364 -14.39845 -14.27689 -14.07853 -14.00719 -13.82869 -13.61818 -13.26724 -13.24766 -13.18142 -12.79388 -12.63172 -12.21703 -12.15870 -12.09361 -12.02422 -11.74864 -11.50682 -11.36362 -11.22629 -10.96825 -10.91123 -10.69781 -10.54580 -10.37286 -10.13121 -10.10858 -9.89917 -9.76510 -9.73662 -9.66629 -8.79401 -8.65383 -8.39591 -6.88569 -5.82508 -3.19325 1.81763 2.41865 2.52074 2.92452 3.16730 3.33604 3.39718 3.41829 3.94515 4.20931 4.25292 4.29443 4.42575 4.44550 4.74656 4.84993 4.86227 4.95298 5.07125 5.16800 5.20279 5.25626 5.27368 5.31641 5.40818 5.42100 5.44364 5.46957 5.56871 5.64498 5.67909 5.70315 5.70911 5.75498 5.95656 6.13026 6.16771 6.18623 6.31173 6.36685 6.46194 6.55767 6.58113 6.62349 6.85495 6.98575 7.03634 7.42739 7.50036 7.55818 7.71783 7.89994 8.15649 8.20406 9.10681 9.71717 10.38857 11.29511 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024186 B = 0.002278 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.394032 B =12291.124601 C =12824.755678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.138 3.862 6 H 0.093 0.907 7 N -0.708 5.708 8 C 0.522 3.478 9 O -0.540 6.540 10 C -0.121 4.121 11 H 0.107 0.893 12 C -0.117 4.117 13 C -0.043 4.043 14 C -0.030 4.030 15 C -0.023 4.023 16 N -0.496 5.496 17 C 0.208 3.792 18 C -0.069 4.069 19 N -0.450 5.450 20 C 0.124 3.876 21 C -0.156 4.156 22 C 0.174 3.826 23 N -0.594 5.594 24 C -0.229 4.229 25 H 0.076 0.924 26 C -0.003 4.003 27 N -0.916 5.916 28 Si 0.910 3.090 29 H -0.279 1.279 30 H -0.290 1.290 31 H -0.290 1.290 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.168 0.832 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.028 0.972 51 H 0.074 0.926 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.300 7.663 -3.507 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.052 0.948 5 C 0.034 3.966 6 H 0.111 0.889 7 N -0.357 5.357 8 C 0.307 3.693 9 O -0.417 6.417 10 C -0.143 4.143 11 H 0.125 0.875 12 C -0.155 4.155 13 C -0.081 4.081 14 C -0.144 4.144 15 C -0.170 4.170 16 N -0.215 5.215 17 C -0.054 4.054 18 C -0.127 4.127 19 N -0.134 5.134 20 C 0.001 3.999 21 C -0.196 4.196 22 C 0.049 3.951 23 N -0.318 5.318 24 C -0.357 4.357 25 H 0.094 0.906 26 C -0.200 4.200 27 N -0.562 5.562 28 Si 0.740 3.260 29 H -0.204 1.204 30 H -0.216 1.216 31 H -0.217 1.217 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.233 0.767 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.186 0.814 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.046 0.954 51 H 0.092 0.908 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.302 7.739 -4.678 21.316 hybrid contribution 1.191 -0.766 1.544 2.095 sum -18.111 6.973 -3.135 19.659 Atomic orbital electron populations 1.21771 0.97298 1.00591 1.00757 1.22024 0.93528 0.99168 1.02499 1.21060 0.87197 0.93342 0.93028 0.94788 1.22140 0.83307 0.92321 0.98857 0.88905 1.46047 1.28176 1.52043 1.09477 1.20015 0.83582 0.80635 0.85098 1.90728 1.71543 1.55733 1.23693 1.21570 0.94847 1.00930 0.96912 0.87482 1.21688 0.95797 0.98404 0.99581 1.20221 0.98111 0.97446 0.92328 1.21131 0.96610 1.07928 0.88699 1.21805 0.97999 1.02786 0.94456 1.70452 1.20498 1.24497 1.06076 1.23119 0.89426 0.97816 0.95004 1.20187 1.02184 1.03859 0.86482 1.45281 1.17672 1.40820 1.09582 1.21688 0.81637 0.99390 0.97150 1.23422 0.96732 0.99036 1.00391 1.21442 0.93103 0.92889 0.87681 1.44455 0.98290 1.68365 1.20717 1.18972 0.89917 1.36030 0.90804 0.90647 1.24918 0.97266 1.00835 0.96984 1.69932 1.10679 1.52770 1.22807 0.86086 0.80257 0.78515 0.81124 1.20422 1.21649 1.21718 0.93417 0.93635 0.93452 0.92353 0.91646 0.76708 0.90554 0.89612 0.89669 0.88995 0.81433 0.90145 0.89217 0.90776 0.88430 0.88480 0.91864 0.92086 0.95363 0.90793 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.58 37.16 0.36 -1.58 16 2 C -0.13 -2.29 5.41 -26.73 -0.14 -2.44 16 3 C 0.16 2.97 2.94 -66.95 -0.20 2.77 16 4 H 0.03 0.61 7.68 -51.93 -0.40 0.21 16 5 C 0.14 2.25 1.93 -66.10 -0.13 2.13 16 6 H 0.09 1.67 7.35 -51.93 -0.38 1.29 16 7 N -0.71 -8.65 4.76 -52.03 -0.25 -8.90 16 8 C 0.52 6.31 7.15 -10.98 -0.08 6.24 16 9 O -0.54 -8.53 15.56 5.56 0.09 -8.44 16 10 C -0.12 -1.05 2.52 -91.59 -0.23 -1.28 16 11 H 0.11 0.84 8.11 -51.93 -0.42 0.42 16 12 C -0.12 -0.84 5.23 -26.42 -0.14 -0.98 16 13 C -0.04 -0.29 6.31 -27.62 -0.17 -0.46 16 14 C -0.03 -0.29 6.57 -81.73 -0.54 -0.83 16 15 C -0.02 -0.25 11.84 -17.95 -0.21 -0.46 16 16 N -0.50 -6.35 11.27 -11.02 -0.12 -6.48 16 17 C 0.21 2.31 7.94 -155.75 -1.24 1.07 16 18 C -0.07 -0.52 10.24 36.00 0.37 -0.15 16 19 N -0.45 -4.60 3.13 -109.46 -0.34 -4.95 16 20 C 0.12 1.16 5.39 -3.93 -0.02 1.14 16 21 C -0.16 -2.86 6.76 -24.58 -0.17 -3.03 16 22 C 0.17 4.03 5.41 -2.51 -0.01 4.01 16 23 N -0.59 -13.98 3.13 -162.54 -0.51 -14.49 16 24 C -0.23 -5.98 9.75 -15.06 -0.15 -6.12 16 25 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 26 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 27 N -0.92 -25.93 10.58 55.49 0.59 -25.34 16 28 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 29 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 30 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 31 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 32 H 0.05 0.62 7.40 -51.93 -0.38 0.24 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 36 H 0.06 1.23 7.90 -51.93 -0.41 0.82 16 37 H 0.40 3.95 7.63 -40.82 -0.31 3.64 16 38 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 39 H 0.09 0.52 7.29 -51.93 -0.38 0.14 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.47 7.59 -51.93 -0.39 0.07 16 46 H 0.10 0.87 7.72 -51.93 -0.40 0.47 16 47 H 0.10 0.98 7.80 -51.93 -0.41 0.57 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 49 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 50 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 51 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 52 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 406.75 15.07 6.13 6.13 Total: -1.00 -32.26 406.75 -11.10 -43.35 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.86 Total: 3.01 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.79 Total: -0.16 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.64 Total: -60.15 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.26 -11.10 -43.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087703174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.053 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds