Wall clock time and date at job start Wed Apr 1 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47459 * 2 1 4 4 H 1.08995 * 109.99825 * 305.52823 * 3 2 1 5 5 C 1.54329 * 109.88249 * 184.43558 * 3 2 1 6 6 H 1.09003 * 110.71759 * 336.92849 * 5 3 2 7 7 N 1.46501 * 110.72311 * 100.02786 * 5 3 2 8 8 C 1.34776 * 119.99945 * 205.00400 * 7 5 3 9 9 O 1.21274 * 120.00332 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99365 * 179.97438 * 8 7 5 11 11 H 1.08991 * 109.75664 * 299.36373 * 10 8 7 12 12 C 1.53394 * 109.71735 * 178.73293 * 10 8 7 13 13 C 1.53017 * 109.71786 * 189.78928 * 12 10 8 14 14 C 1.53376 * 109.74419 * 71.74089 * 13 12 10 15 15 C 1.50939 * 108.20693 * 309.35475 * 14 13 12 16 16 N 1.30127 * 128.29214 * 196.79848 * 15 14 13 17 17 N 1.40306 * 108.12848 * 179.68514 * 16 15 14 18 18 C 1.46509 * 126.00562 * 180.10387 * 17 16 15 19 19 C 1.35191 * 107.99360 * 0.07188 * 17 16 15 20 20 C 1.34569 * 107.61794 * 0.02562 * 19 17 16 21 21 C 1.55155 * 102.94376 * 218.38982 * 5 3 2 22 22 C 1.54911 * 101.58287 * 35.50203 * 21 5 3 23 23 N 1.47020 * 109.88460 * 66.62822 * 3 2 1 24 24 C 1.36933 * 125.64675 * 298.39878 * 23 3 2 25 25 H 1.08005 * 119.99906 * 336.97102 * 24 23 3 26 26 C 1.38815 * 120.00254 * 156.97817 * 24 23 3 27 27 N 1.31619 * 119.99966 * 158.60283 * 26 24 23 28 28 Si 1.86790 * 119.99937 * 338.60117 * 26 24 23 29 29 H 1.48498 * 109.47367 * 90.94857 * 28 26 24 30 30 H 1.48503 * 109.47481 * 210.95164 * 28 26 24 31 31 H 1.48500 * 109.47316 * 330.95102 * 28 26 24 32 32 H 1.08996 * 109.47072 * 293.25114 * 1 2 3 33 33 H 1.08999 * 109.46847 * 53.24737 * 1 2 3 34 34 H 1.08999 * 109.47415 * 173.24423 * 1 2 3 35 35 H 1.09005 * 109.47209 * 239.99923 * 2 1 3 36 36 H 1.09003 * 109.47065 * 120.00045 * 2 1 3 37 37 H 0.96998 * 119.99536 * 24.99400 * 7 5 3 38 38 H 1.09004 * 109.43048 * 309.87259 * 12 10 8 39 39 H 1.09005 * 109.42819 * 69.71057 * 12 10 8 40 40 H 1.09007 * 109.42654 * 191.81802 * 13 12 10 41 41 H 1.08994 * 109.43168 * 311.71128 * 13 12 10 42 42 H 1.09005 * 109.71723 * 69.03616 * 14 13 12 43 43 H 1.09008 * 109.71578 * 189.62993 * 14 13 12 44 44 H 1.08994 * 109.46692 * 89.97276 * 18 17 16 45 45 H 1.08994 * 109.47162 * 209.97997 * 18 17 16 46 46 H 1.09001 * 109.47087 * 329.97799 * 18 17 16 47 47 H 1.08006 * 126.19363 * 180.02562 * 19 17 16 48 48 H 1.08996 * 111.00942 * 153.57430 * 21 5 3 49 49 H 1.08999 * 111.00276 * 277.42959 * 21 5 3 50 50 H 1.08996 * 110.37288 * 204.15271 * 22 21 5 51 51 H 1.09004 * 110.36976 * 81.82552 * 22 21 5 52 52 H 0.97001 * 120.00283 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6032 1.9923 -0.8335 5 6 3.5792 1.4549 -0.1122 6 1 3.9987 0.5100 0.2334 7 7 3.9963 1.7323 -1.4889 8 6 5.1989 1.3099 -1.9268 9 8 5.9360 0.7004 -1.1811 10 6 5.6277 1.5949 -3.3431 11 1 4.9294 1.1313 -4.0398 12 6 7.0383 1.0401 -3.5784 13 6 7.5702 1.5361 -4.9247 14 6 7.9006 3.0310 -4.8324 15 6 6.7035 3.7435 -4.2513 16 7 6.4330 5.0161 -4.2745 17 7 5.2102 5.2146 -3.6157 18 6 4.5374 6.5009 -3.4177 19 6 4.7614 4.0102 -3.1965 20 6 5.6634 3.0856 -3.5737 21 6 3.9870 2.6182 0.8299 22 6 2.9328 2.4892 1.9577 23 7 1.6897 2.0967 1.2691 24 6 0.4191 2.3060 1.7349 25 1 -0.4110 2.3357 1.0447 26 6 0.1981 2.4803 3.0942 27 7 -0.8948 3.0836 3.5112 28 14 1.4517 1.8585 4.3315 29 1 2.4320 2.9343 4.6263 30 1 0.7578 1.4644 5.5839 31 1 2.1621 0.6825 3.7681 32 1 -0.3633 0.4057 0.9442 33 1 -0.3633 0.6149 -0.8234 34 1 -0.3634 -1.0205 -0.1209 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.4069 2.2200 -2.0853 38 1 7.6990 1.3790 -2.7803 39 1 7.0037 -0.0493 -3.5812 40 1 8.4716 0.9811 -5.1851 41 1 6.8135 1.3797 -5.6934 42 1 8.7655 3.1772 -4.1853 43 1 8.1152 3.4223 -5.8269 44 1 3.8716 6.6959 -4.2583 45 1 3.9581 6.4697 -2.4949 46 1 5.2821 7.2942 -3.3524 47 1 3.8447 3.8238 -2.6566 48 1 4.9947 2.4715 1.2185 49 1 3.9014 3.5795 0.3233 50 1 2.8002 3.4452 2.4643 51 1 3.2312 1.7198 2.6697 52 1 -1.0495 3.2051 4.4611 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087703257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:51 Heat of formation + Delta-G solvation = 60.473358 kcal Electronic energy + Delta-G solvation = -32037.486054 eV Core-core repulsion = 28038.980257 eV Total energy + Delta-G solvation = -3998.505796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.82249 -39.82150 -38.18730 -36.55851 -34.28329 -32.96780 -32.56569 -32.42714 -31.72371 -29.36484 -28.84227 -27.48834 -27.01018 -24.70170 -23.72198 -22.22440 -22.08548 -21.57818 -20.70073 -20.38632 -19.35919 -18.96522 -17.11675 -17.04124 -16.68285 -16.08931 -15.76218 -15.21988 -15.17251 -15.08903 -14.65551 -14.40156 -13.77866 -13.65128 -13.59626 -13.18635 -13.08121 -13.07345 -12.92663 -12.84607 -12.56345 -12.48327 -12.19946 -11.97087 -11.88220 -11.45202 -11.38367 -11.18114 -11.11139 -11.04115 -10.93934 -10.70137 -10.57810 -10.42257 -10.33410 -10.10831 -9.87756 -9.70998 -9.42931 -9.34300 -8.82502 -8.63800 -8.48432 -7.06471 -6.00072 -3.32338 1.68345 2.24982 2.46086 2.81438 3.27694 3.33580 3.47294 3.49842 4.08900 4.49793 4.51341 4.56434 4.63914 4.76683 4.77213 4.90252 4.93617 5.07705 5.13088 5.19551 5.19943 5.22215 5.27806 5.28030 5.29780 5.43795 5.57546 5.59681 5.69439 5.77425 5.83549 5.86986 5.91933 5.92920 5.96237 6.06989 6.15658 6.20118 6.30844 6.39885 6.44329 6.50844 6.57944 6.60324 6.72738 6.74551 6.78729 7.00624 7.28954 7.52104 7.60190 7.70939 8.26159 8.33068 8.78022 9.63461 10.13536 11.15314 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.003154 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.405663 B = 8876.506734 C = 9612.952489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.158 3.842 4 H 0.044 0.956 5 C 0.133 3.867 6 H 0.098 0.902 7 N -0.718 5.718 8 C 0.523 3.477 9 O -0.538 6.538 10 C -0.025 4.025 11 H 0.102 0.898 12 C -0.098 4.098 13 C -0.114 4.114 14 C -0.039 4.039 15 C 0.087 3.913 16 N -0.291 5.291 17 N -0.378 5.378 18 C 0.102 3.898 19 C 0.068 3.932 20 C -0.234 4.234 21 C -0.138 4.138 22 C 0.112 3.888 23 N -0.598 5.598 24 C -0.235 4.235 25 H 0.095 0.905 26 C 0.025 3.975 27 N -0.907 5.907 28 Si 0.878 3.122 29 H -0.288 1.288 30 H -0.302 1.302 31 H -0.271 1.271 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.395 0.605 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.173 0.827 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.059 0.941 51 H 0.029 0.971 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.498 0.653 -18.333 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C 0.051 3.949 4 H 0.062 0.938 5 C 0.028 3.972 6 H 0.116 0.884 7 N -0.370 5.370 8 C 0.309 3.691 9 O -0.414 6.414 10 C -0.047 4.047 11 H 0.119 0.881 12 C -0.136 4.136 13 C -0.152 4.152 14 C -0.078 4.078 15 C -0.081 4.081 16 N -0.112 5.112 17 N -0.160 5.160 18 C -0.040 4.040 19 C -0.077 4.077 20 C -0.246 4.246 21 C -0.178 4.178 22 C -0.014 4.014 23 N -0.324 5.324 24 C -0.362 4.362 25 H 0.113 0.887 26 C -0.174 4.174 27 N -0.550 5.550 28 Si 0.708 3.292 29 H -0.215 1.215 30 H -0.230 1.230 31 H -0.196 1.196 32 H 0.112 0.888 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.230 0.770 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.190 0.810 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.077 0.923 51 H 0.047 0.953 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.105 1.615 -17.956 22.890 hybrid contribution -0.224 -0.719 1.003 1.254 sum 13.881 0.897 -16.952 21.929 Atomic orbital electron populations 1.21947 0.95385 0.99350 1.04405 1.21900 0.97214 0.97289 1.00035 1.21188 0.90101 0.92593 0.91003 0.93846 1.22119 0.95488 0.99182 0.80419 0.88448 1.46183 1.18468 1.58250 1.14054 1.20504 0.81175 0.78180 0.89224 1.90686 1.52655 1.40732 1.57371 1.19735 0.99628 0.91455 0.93908 0.88064 1.21388 0.94049 1.00692 0.97507 1.21581 1.01594 0.94297 0.97771 1.20151 0.92917 0.93920 1.00808 1.22273 0.97095 0.90562 0.98150 1.77030 0.98449 1.17398 1.18335 1.48477 1.16703 1.06628 1.44159 1.21899 0.97296 0.81855 1.02919 1.22116 1.00106 0.85278 1.00210 1.19589 0.98245 0.95109 1.11671 1.23101 0.98971 0.98181 0.97550 1.21959 0.86411 0.98802 0.94197 1.44771 1.01795 1.66155 1.19727 1.18563 0.82769 1.43372 0.91480 0.88710 1.25079 0.96127 0.99458 0.96720 1.69817 1.27541 1.42663 1.15016 0.87013 0.80958 0.80059 0.81198 1.21464 1.23032 1.19633 0.88775 0.94053 0.94947 0.93828 0.92445 0.76977 0.90594 0.90785 0.90615 0.91395 0.89774 0.90012 0.90666 0.89076 0.89317 0.81038 0.91408 0.91318 0.92253 0.95334 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.04 37.16 0.34 -2.47 16 2 C -0.12 -2.21 5.45 -26.73 -0.15 -2.35 16 3 C 0.16 2.85 3.00 -66.95 -0.20 2.65 16 4 H 0.04 0.75 7.72 -51.93 -0.40 0.35 16 5 C 0.13 2.15 2.85 -66.09 -0.19 1.96 16 6 H 0.10 1.74 7.25 -51.93 -0.38 1.36 16 7 N -0.72 -9.29 4.59 -52.03 -0.24 -9.53 16 8 C 0.52 7.11 7.09 -10.98 -0.08 7.04 16 9 O -0.54 -9.29 15.50 5.56 0.09 -9.20 16 10 C -0.02 -0.26 2.90 -92.63 -0.27 -0.53 16 11 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 12 C -0.10 -0.95 4.61 -26.52 -0.12 -1.08 16 13 C -0.11 -0.84 5.86 -26.53 -0.16 -0.99 16 14 C -0.04 -0.33 6.31 -27.57 -0.17 -0.50 16 15 C 0.09 1.01 7.10 -82.35 -0.58 0.42 16 16 N -0.29 -3.70 12.56 33.75 0.42 -3.28 16 17 N -0.38 -4.19 4.02 -68.29 -0.27 -4.46 16 18 C 0.10 0.75 11.47 59.85 0.69 1.44 16 19 C 0.07 0.74 10.49 -17.37 -0.18 0.55 16 20 C -0.23 -2.62 5.41 -104.98 -0.57 -3.19 16 21 C -0.14 -2.37 6.77 -24.58 -0.17 -2.53 16 22 C 0.11 2.35 4.77 -2.52 -0.01 2.34 16 23 N -0.60 -13.30 2.88 -162.57 -0.47 -13.77 16 24 C -0.23 -6.11 7.96 -15.06 -0.12 -6.23 16 25 H 0.10 2.60 7.12 -52.48 -0.37 2.23 16 26 C 0.03 0.70 5.44 -17.43 -0.09 0.61 16 27 N -0.91 -26.87 13.97 55.49 0.78 -26.10 16 28 Si 0.88 22.06 24.43 -169.99 -4.15 17.91 16 29 H -0.29 -7.10 6.96 56.52 0.39 -6.71 16 30 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 31 H -0.27 -6.73 6.39 56.52 0.36 -6.37 16 32 H 0.09 2.06 5.36 -51.93 -0.28 1.78 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.39 4.20 6.04 -40.82 -0.25 3.95 16 38 H 0.08 0.88 7.77 -51.93 -0.40 0.47 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 41 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.17 1.56 5.93 -52.48 -0.31 1.25 16 48 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.06 1.32 7.25 -51.93 -0.38 0.94 16 51 H 0.03 0.64 5.28 -51.93 -0.27 0.37 16 52 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -33.18 395.04 -8.50 -41.68 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.56 Total: 3.67 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.04 Total: -2.88 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.22 Total: -57.13 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.15 Total: 17.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.18 -8.50 -41.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087703257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.155 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds