Wall clock time and date at job start Wed Apr 1 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47623 * 2 1 4 4 H 1.08999 * 109.86864 * 301.84585 * 3 2 1 5 5 C 1.54329 * 109.88376 * 180.82795 * 3 2 1 6 6 H 1.09000 * 110.71693 * 336.75281 * 5 3 2 7 7 N 1.46498 * 110.71933 * 100.02370 * 5 3 2 8 8 C 1.34770 * 120.00259 * 199.97374 * 7 5 3 9 9 O 1.21289 * 119.99823 * 0.02562 * 8 7 5 10 10 C 1.50695 * 120.00321 * 180.02562 * 8 7 5 11 11 H 1.08992 * 109.50021 * 59.93652 * 10 8 7 12 12 C 1.53125 * 109.49980 * 180.02562 * 10 8 7 13 13 C 1.53285 * 109.71413 * 189.85855 * 12 10 8 14 14 N 1.46477 * 108.69480 * 309.26349 * 13 12 10 15 15 C 1.34410 * 128.44050 * 197.27599 * 14 13 12 16 16 C 1.50701 * 125.72268 * 359.87570 * 15 14 13 17 17 N 1.30777 * 108.55135 * 179.87317 * 15 14 13 18 18 C 1.34426 * 109.32603 * 0.04681 * 17 15 14 19 19 C 1.33865 * 107.79333 * 359.97438 * 18 17 15 20 20 C 1.50704 * 128.67368 * 179.85810 * 19 18 17 21 21 C 1.55150 * 102.94207 * 218.39108 * 5 3 2 22 22 C 1.54914 * 101.61967 * 35.48191 * 21 5 3 23 23 N 1.47021 * 109.88106 * 63.01934 * 3 2 1 24 24 C 1.36937 * 125.64961 * 298.41377 * 23 3 2 25 25 H 1.08005 * 119.99719 * 340.69278 * 24 23 3 26 26 C 1.38814 * 120.00128 * 160.69399 * 24 23 3 27 27 N 1.31614 * 120.00054 * 160.00951 * 26 24 23 28 28 Si 1.86805 * 119.99777 * 340.00247 * 26 24 23 29 29 H 1.48498 * 109.46849 * 84.90137 * 28 26 24 30 30 H 1.48495 * 109.47110 * 204.90297 * 28 26 24 31 31 H 1.48497 * 109.47111 * 324.90118 * 28 26 24 32 32 H 1.09003 * 109.47255 * 172.02918 * 1 2 3 33 33 H 1.08999 * 109.47205 * 292.03774 * 1 2 3 34 34 H 1.09008 * 109.46663 * 52.03033 * 1 2 3 35 35 H 1.09004 * 109.47248 * 239.99087 * 2 1 3 36 36 H 1.09009 * 109.46736 * 120.00425 * 2 1 3 37 37 H 0.97006 * 119.99422 * 19.97912 * 7 5 3 38 38 H 1.08998 * 109.42681 * 309.93107 * 12 10 8 39 39 H 1.08989 * 109.43333 * 69.78095 * 12 10 8 40 40 H 1.09003 * 109.59702 * 69.02429 * 13 12 10 41 41 H 1.08994 * 109.59856 * 189.49810 * 13 12 10 42 42 H 1.08998 * 109.47225 * 89.99616 * 16 15 14 43 43 H 1.08996 * 109.47074 * 210.00200 * 16 15 14 44 44 H 1.09007 * 109.47165 * 330.00204 * 16 15 14 45 45 H 1.07994 * 126.10137 * 180.02562 * 18 17 15 46 46 H 1.09004 * 109.75084 * 76.22143 * 20 19 18 47 47 H 1.08996 * 109.75227 * 315.49275 * 20 19 18 48 48 H 1.08997 * 111.00852 * 153.57994 * 21 5 3 49 49 H 1.09003 * 111.00406 * 277.38953 * 21 5 3 50 50 H 1.08990 * 110.36380 * 81.84680 * 22 21 5 51 51 H 1.08999 * 110.36800 * 204.17557 * 22 21 5 52 52 H 0.97003 * 119.99871 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6537 1.9720 -0.8708 5 6 3.5832 1.4534 -0.0210 6 1 3.9809 0.5175 0.3715 7 7 4.0814 1.7021 -1.3760 8 6 5.3439 1.3622 -1.7028 9 8 6.0676 0.8500 -0.8752 10 6 5.8565 1.6186 -3.0965 11 1 5.8065 2.6858 -3.3120 12 6 7.3081 1.1428 -3.2028 13 6 7.9125 1.6187 -4.5286 14 7 7.0062 1.2476 -5.6178 15 6 7.2666 1.1781 -6.9346 16 6 8.5910 1.4808 -7.5868 17 7 6.1778 0.8038 -7.5549 18 6 5.1935 0.6247 -6.6570 19 6 5.6914 0.8968 -5.4445 20 6 4.9956 0.8496 -4.1086 21 6 3.9351 2.6365 0.9191 22 6 2.8158 2.5316 1.9850 23 7 1.6154 2.1229 1.2321 24 6 0.3196 2.3409 1.6174 25 1 -0.4755 2.2958 0.8878 26 6 0.0280 2.6200 2.9455 27 7 -1.1077 3.2057 3.2609 28 14 1.2474 2.1641 4.2852 29 1 2.2557 3.2452 4.4255 30 1 0.5268 1.9892 5.5718 31 1 1.9290 0.8954 3.9233 32 1 -0.3634 -1.0178 -0.1425 33 1 -0.3633 0.3856 0.9526 34 1 -0.3633 0.6323 -0.8102 35 1 1.8934 -0.5140 -0.8899 36 1 1.8933 -0.5140 0.8900 37 1 3.5025 2.1116 -2.0380 38 1 7.8853 1.5519 -2.3736 39 1 7.3368 0.0541 -3.1613 40 1 8.0341 2.7017 -4.5071 41 1 8.8811 1.1427 -4.6806 42 1 9.1878 0.5701 -7.6372 43 1 8.4215 1.8605 -8.5943 44 1 9.1218 2.2309 -7.0003 45 1 4.1820 0.3156 -6.8749 46 1 4.8849 -0.1861 -3.7872 47 1 4.0146 1.3181 -4.1874 48 1 4.9179 2.4986 1.3697 49 1 3.8810 3.5869 0.3881 50 1 3.0709 1.7779 2.7298 51 1 2.6544 3.4983 2.4619 52 1 -1.3113 3.4010 4.1890 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087725947.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:11 Heat of formation + Delta-G solvation = 41.253966 kcal Electronic energy + Delta-G solvation = -31260.167400 eV Core-core repulsion = 27260.828189 eV Total energy + Delta-G solvation = -3999.339212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.68629 -40.20197 -38.33459 -36.49523 -34.40852 -33.71543 -32.58652 -32.16105 -31.50657 -30.13569 -29.37277 -27.46563 -26.77905 -24.71404 -24.41207 -23.03066 -22.24190 -21.01622 -20.96452 -20.41351 -19.52319 -19.16835 -17.22218 -17.12532 -16.98018 -16.39865 -16.05650 -15.40578 -15.10555 -14.89587 -14.42672 -14.33366 -14.15178 -13.98153 -13.77844 -13.64900 -13.33901 -13.27844 -13.10303 -12.85984 -12.74141 -12.52848 -12.26922 -12.24642 -12.14567 -11.90597 -11.57383 -11.46120 -11.42420 -11.17740 -10.99543 -10.70357 -10.39567 -10.32271 -10.26311 -10.07718 -9.92884 -9.79550 -9.75034 -9.31479 -8.93823 -8.68557 -8.45748 -7.10540 -5.97770 -3.29769 1.74035 2.42512 2.50522 2.87343 3.03920 3.31997 3.46528 3.47238 3.97742 4.15628 4.16298 4.21067 4.39553 4.50694 4.59897 4.69071 4.78718 4.84502 4.92820 5.01680 5.10530 5.11257 5.15610 5.16037 5.24890 5.28508 5.32861 5.41393 5.48998 5.53933 5.63975 5.69429 5.74585 5.83055 5.88022 6.03839 6.10021 6.11376 6.24894 6.33586 6.48192 6.50384 6.54339 6.57669 6.69362 6.70057 6.92623 6.96549 7.30566 7.47224 7.66349 7.84057 8.14622 8.27068 8.77604 9.63697 10.11145 11.17529 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.002363 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.685499 B =11845.308483 C =12551.143150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.160 3.840 4 H 0.046 0.954 5 C 0.134 3.866 6 H 0.095 0.905 7 N -0.712 5.712 8 C 0.520 3.480 9 O -0.539 6.539 10 C -0.111 4.111 11 H 0.102 0.898 12 C -0.113 4.113 13 C 0.103 3.897 14 N -0.452 5.452 15 C 0.204 3.796 16 C -0.067 4.067 17 N -0.494 5.494 18 C -0.019 4.019 19 C -0.023 4.023 20 C -0.035 4.035 21 C -0.139 4.139 22 C 0.108 3.892 23 N -0.599 5.599 24 C -0.234 4.234 25 H 0.099 0.901 26 C 0.021 3.979 27 N -0.909 5.909 28 Si 0.883 3.117 29 H -0.287 1.287 30 H -0.304 1.304 31 H -0.275 1.275 32 H 0.031 0.969 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.401 0.599 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.171 0.829 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.030 0.970 51 H 0.062 0.938 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.562 -2.811 -17.866 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.053 3.947 4 H 0.064 0.936 5 C 0.029 3.971 6 H 0.113 0.887 7 N -0.362 5.362 8 C 0.305 3.695 9 O -0.416 6.416 10 C -0.133 4.133 11 H 0.120 0.880 12 C -0.151 4.151 13 C -0.019 4.019 14 N -0.137 5.137 15 C -0.058 4.058 16 C -0.125 4.125 17 N -0.213 5.213 18 C -0.166 4.166 19 C -0.137 4.137 20 C -0.074 4.074 21 C -0.179 4.179 22 C -0.017 4.017 23 N -0.325 5.325 24 C -0.361 4.361 25 H 0.117 0.883 26 C -0.178 4.178 27 N -0.553 5.553 28 Si 0.714 3.286 29 H -0.214 1.214 30 H -0.232 1.232 31 H -0.201 1.201 32 H 0.050 0.950 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.235 0.765 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.188 0.812 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.047 0.953 51 H 0.081 0.919 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.906 -3.168 -17.845 26.190 hybrid contribution 0.342 0.056 1.507 1.547 sum 19.248 -3.112 -16.338 25.438 Atomic orbital electron populations 1.21975 0.95207 0.99204 1.04702 1.21913 0.97429 0.97178 0.99934 1.21149 0.89496 0.92464 0.91620 0.93594 1.22125 0.94922 0.99114 0.80933 0.88693 1.46044 1.13392 1.62710 1.14089 1.20278 0.81970 0.78103 0.89122 1.90714 1.56322 1.43244 1.51329 1.21438 0.96345 1.02472 0.93043 0.88004 1.21682 0.94585 1.03048 0.95810 1.22046 0.93113 1.01462 0.85291 1.45302 1.10013 1.50929 1.07442 1.23116 0.97933 1.04739 0.79969 1.20158 0.89002 1.02273 1.01080 1.70454 0.98810 1.19264 1.32778 1.21847 0.99528 1.07274 0.87955 1.20962 0.85081 1.09926 0.97714 1.20192 0.97685 1.01802 0.87707 1.23117 0.98856 0.98144 0.97747 1.22018 0.86688 0.98959 0.94065 1.44784 1.01814 1.64780 1.21172 1.18630 0.81765 1.42341 0.93356 0.88334 1.25001 0.96081 0.99797 0.96913 1.69797 1.24507 1.42705 1.18290 0.87012 0.80441 0.79270 0.81894 1.21364 1.23195 1.20052 0.95039 0.88669 0.93869 0.93820 0.92597 0.76464 0.88243 0.90039 0.89530 0.88731 0.90267 0.89183 0.90976 0.81213 0.89294 0.88670 0.91320 0.91026 0.95289 0.91940 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.73 37.16 0.32 -2.47 16 2 C -0.12 -2.15 5.49 -26.73 -0.15 -2.29 16 3 C 0.16 2.83 3.03 -66.95 -0.20 2.62 16 4 H 0.05 0.79 7.68 -51.93 -0.40 0.39 16 5 C 0.13 2.07 2.76 -66.10 -0.18 1.89 16 6 H 0.10 1.60 7.41 -51.93 -0.38 1.22 16 7 N -0.71 -8.36 5.11 -52.03 -0.27 -8.63 16 8 C 0.52 6.06 7.13 -10.99 -0.08 5.98 16 9 O -0.54 -8.31 15.55 5.55 0.09 -8.22 16 10 C -0.11 -0.91 2.55 -91.44 -0.23 -1.15 16 11 H 0.10 0.73 8.12 -51.93 -0.42 0.31 16 12 C -0.11 -0.85 4.66 -26.52 -0.12 -0.98 16 13 C 0.10 0.62 6.61 -3.91 -0.03 0.59 16 14 N -0.45 -3.98 3.13 -109.43 -0.34 -4.32 16 15 C 0.20 1.99 7.94 -155.76 -1.24 0.75 16 16 C -0.07 -0.38 10.24 36.01 0.37 -0.01 16 17 N -0.49 -6.02 11.27 -11.02 -0.12 -6.15 16 18 C -0.02 -0.20 11.84 -17.95 -0.21 -0.41 16 19 C -0.02 -0.22 6.57 -81.73 -0.54 -0.76 16 20 C -0.04 -0.28 5.45 -27.61 -0.15 -0.43 16 21 C -0.14 -2.32 6.76 -24.58 -0.17 -2.48 16 22 C 0.11 2.25 4.69 -2.50 -0.01 2.24 16 23 N -0.60 -13.28 2.94 -162.54 -0.48 -13.76 16 24 C -0.23 -6.09 7.92 -15.06 -0.12 -6.21 16 25 H 0.10 2.71 6.94 -52.48 -0.36 2.34 16 26 C 0.02 0.57 5.45 -17.43 -0.10 0.48 16 27 N -0.91 -27.01 13.97 55.49 0.78 -26.24 16 28 Si 0.88 22.06 24.25 -169.99 -4.12 17.94 16 29 H -0.29 -6.96 6.52 56.52 0.37 -6.59 16 30 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 31 H -0.27 -6.78 6.47 56.52 0.37 -6.41 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 2.09 5.41 -51.93 -0.28 1.81 16 34 H 0.04 0.75 8.13 -51.92 -0.42 0.33 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 37 H 0.40 3.80 8.03 -40.82 -0.33 3.47 16 38 H 0.10 0.77 7.77 -51.93 -0.40 0.36 16 39 H 0.08 0.71 8.11 -51.94 -0.42 0.29 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.27 7.95 -51.92 -0.41 -0.14 16 45 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 47 H 0.09 0.61 7.95 -51.93 -0.41 0.20 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.03 0.65 5.42 -51.93 -0.28 0.36 16 51 H 0.06 1.39 6.58 -51.93 -0.34 1.05 16 52 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -33.51 397.39 -10.04 -43.55 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.73 Total: 2.48 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.83 Total: -2.64 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.44 Total: -59.10 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.12 Total: 17.94 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.51 -10.04 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087725947.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.805 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds