Wall clock time and date at job start Wed Apr 1 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47623 * 2 1 4 4 H 1.08999 * 109.86864 * 301.84585 * 3 2 1 5 5 C 1.54329 * 109.88376 * 180.82795 * 3 2 1 6 6 H 1.09000 * 110.71693 * 336.75281 * 5 3 2 7 7 N 1.46498 * 110.71933 * 100.02370 * 5 3 2 8 8 C 1.34770 * 120.00259 * 199.97374 * 7 5 3 9 9 O 1.21289 * 119.99823 * 0.02562 * 8 7 5 10 10 C 1.50695 * 120.00321 * 180.02562 * 8 7 5 11 11 H 1.08992 * 109.50021 * 59.93652 * 10 8 7 12 12 C 1.53125 * 109.49980 * 180.02562 * 10 8 7 13 13 C 1.53285 * 109.71413 * 189.85855 * 12 10 8 14 14 N 1.46477 * 108.69480 * 309.26349 * 13 12 10 15 15 C 1.34410 * 128.44050 * 197.27599 * 14 13 12 16 16 C 1.50701 * 125.72268 * 359.87570 * 15 14 13 17 17 N 1.30777 * 108.55135 * 179.87317 * 15 14 13 18 18 C 1.34426 * 109.32603 * 0.04681 * 17 15 14 19 19 C 1.33865 * 107.79333 * 359.97438 * 18 17 15 20 20 C 1.50704 * 128.67368 * 179.85810 * 19 18 17 21 21 C 1.55150 * 102.94207 * 218.39108 * 5 3 2 22 22 C 1.54914 * 101.61967 * 35.48191 * 21 5 3 23 23 N 1.47021 * 109.88106 * 63.01934 * 3 2 1 24 24 C 1.36937 * 125.64961 * 298.41377 * 23 3 2 25 25 H 1.08005 * 119.99719 * 340.69278 * 24 23 3 26 26 C 1.38814 * 120.00128 * 160.69399 * 24 23 3 27 27 N 1.31614 * 120.00054 * 160.00951 * 26 24 23 28 28 Si 1.86805 * 119.99777 * 340.00247 * 26 24 23 29 29 H 1.48498 * 109.46849 * 84.90137 * 28 26 24 30 30 H 1.48495 * 109.47110 * 204.90297 * 28 26 24 31 31 H 1.48497 * 109.47111 * 324.90118 * 28 26 24 32 32 H 1.09003 * 109.47255 * 172.02918 * 1 2 3 33 33 H 1.08999 * 109.47205 * 292.03774 * 1 2 3 34 34 H 1.09008 * 109.46663 * 52.03033 * 1 2 3 35 35 H 1.09004 * 109.47248 * 239.99087 * 2 1 3 36 36 H 1.09009 * 109.46736 * 120.00425 * 2 1 3 37 37 H 0.97006 * 119.99422 * 19.97912 * 7 5 3 38 38 H 1.08998 * 109.42681 * 309.93107 * 12 10 8 39 39 H 1.08989 * 109.43333 * 69.78095 * 12 10 8 40 40 H 1.09003 * 109.59702 * 69.02429 * 13 12 10 41 41 H 1.08994 * 109.59856 * 189.49810 * 13 12 10 42 42 H 1.08998 * 109.47225 * 89.99616 * 16 15 14 43 43 H 1.08996 * 109.47074 * 210.00200 * 16 15 14 44 44 H 1.09007 * 109.47165 * 330.00204 * 16 15 14 45 45 H 1.07994 * 126.10137 * 180.02562 * 18 17 15 46 46 H 1.09004 * 109.75084 * 76.22143 * 20 19 18 47 47 H 1.08996 * 109.75227 * 315.49275 * 20 19 18 48 48 H 1.08997 * 111.00852 * 153.57994 * 21 5 3 49 49 H 1.09003 * 111.00406 * 277.38953 * 21 5 3 50 50 H 1.08990 * 110.36380 * 81.84680 * 22 21 5 51 51 H 1.08999 * 110.36800 * 204.17557 * 22 21 5 52 52 H 0.97003 * 119.99871 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6537 1.9720 -0.8708 5 6 3.5832 1.4534 -0.0210 6 1 3.9809 0.5175 0.3715 7 7 4.0814 1.7021 -1.3760 8 6 5.3439 1.3622 -1.7028 9 8 6.0676 0.8500 -0.8752 10 6 5.8565 1.6186 -3.0965 11 1 5.8065 2.6858 -3.3120 12 6 7.3081 1.1428 -3.2028 13 6 7.9125 1.6187 -4.5286 14 7 7.0062 1.2476 -5.6178 15 6 7.2666 1.1781 -6.9346 16 6 8.5910 1.4808 -7.5868 17 7 6.1778 0.8038 -7.5549 18 6 5.1935 0.6247 -6.6570 19 6 5.6914 0.8968 -5.4445 20 6 4.9956 0.8496 -4.1086 21 6 3.9351 2.6365 0.9191 22 6 2.8158 2.5316 1.9850 23 7 1.6154 2.1229 1.2321 24 6 0.3196 2.3409 1.6174 25 1 -0.4755 2.2958 0.8878 26 6 0.0280 2.6200 2.9455 27 7 -1.1077 3.2057 3.2609 28 14 1.2474 2.1641 4.2852 29 1 2.2557 3.2452 4.4255 30 1 0.5268 1.9892 5.5718 31 1 1.9290 0.8954 3.9233 32 1 -0.3634 -1.0178 -0.1425 33 1 -0.3633 0.3856 0.9526 34 1 -0.3633 0.6323 -0.8102 35 1 1.8934 -0.5140 -0.8899 36 1 1.8933 -0.5140 0.8900 37 1 3.5025 2.1116 -2.0380 38 1 7.8853 1.5519 -2.3736 39 1 7.3368 0.0541 -3.1613 40 1 8.0341 2.7017 -4.5071 41 1 8.8811 1.1427 -4.6806 42 1 9.1878 0.5701 -7.6372 43 1 8.4215 1.8605 -8.5943 44 1 9.1218 2.2309 -7.0003 45 1 4.1820 0.3156 -6.8749 46 1 4.8849 -0.1861 -3.7872 47 1 4.0146 1.3181 -4.1874 48 1 4.9179 2.4986 1.3697 49 1 3.8810 3.5869 0.3881 50 1 3.0709 1.7779 2.7298 51 1 2.6544 3.4983 2.4619 52 1 -1.3113 3.4010 4.1890 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087725947.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:10 Heat of formation + Delta-G solvation = 19.571545 kcal Electronic energy + Delta-G solvation = -31261.107621 eV Core-core repulsion = 27260.828189 eV Total energy + Delta-G solvation = -4000.279432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.34560 -41.25454 -39.70448 -37.24584 -35.69049 -34.48901 -34.13705 -33.80261 -32.20772 -31.13930 -30.56022 -28.76893 -27.64562 -26.11707 -25.25361 -23.98328 -23.83617 -22.21149 -21.63685 -21.54565 -20.82018 -19.89313 -18.89273 -18.14280 -17.81621 -17.48096 -16.99757 -16.80390 -16.28481 -16.10680 -15.34287 -15.23464 -15.01585 -15.00376 -14.86449 -14.77442 -14.56711 -14.33604 -14.06762 -13.93398 -13.83920 -13.72257 -13.51022 -13.14570 -13.05574 -13.01871 -12.85295 -12.73980 -12.59527 -12.36817 -12.16582 -12.04307 -11.97164 -11.92692 -11.66855 -11.53903 -11.23429 -11.02947 -10.74817 -10.70927 -10.44544 -10.03640 -9.13888 -9.01093 -8.10804 -5.36898 1.08484 1.30202 1.39968 1.45691 1.58481 1.84742 2.06484 2.15353 2.44166 3.09651 3.25980 3.39536 3.54790 3.59263 3.64886 3.66295 3.75021 3.80619 4.02343 4.13269 4.17778 4.23869 4.28408 4.35407 4.40798 4.45000 4.51226 4.61077 4.61879 4.67615 4.71876 4.73952 4.76441 4.83862 4.89173 4.92763 4.95905 5.00634 5.09352 5.10173 5.11320 5.15718 5.20735 5.38082 5.44369 5.59742 5.68782 5.79920 5.82549 6.17837 6.32617 6.54940 6.80144 7.15324 7.23006 7.59151 8.14063 9.08366 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.002363 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.685499 B =11845.308483 C =12551.143150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.157 3.843 4 H 0.061 0.939 5 C 0.150 3.850 6 H 0.085 0.915 7 N -0.702 5.702 8 C 0.525 3.475 9 O -0.575 6.575 10 C -0.100 4.100 11 H 0.122 0.878 12 C -0.110 4.110 13 C 0.103 3.897 14 N -0.453 5.453 15 C 0.198 3.802 16 C -0.066 4.066 17 N -0.537 5.537 18 C -0.045 4.045 19 C -0.025 4.025 20 C -0.030 4.030 21 C -0.126 4.126 22 C 0.101 3.899 23 N -0.615 5.615 24 C -0.200 4.200 25 H 0.079 0.921 26 C -0.040 4.040 27 N -0.958 5.958 28 Si 0.933 3.067 29 H -0.277 1.277 30 H -0.316 1.316 31 H -0.272 1.272 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.415 0.585 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.177 0.823 46 H 0.084 0.916 47 H 0.112 0.888 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.019 0.981 51 H 0.044 0.956 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.373 -2.805 -19.764 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.050 3.950 4 H 0.079 0.921 5 C 0.044 3.956 6 H 0.103 0.897 7 N -0.354 5.354 8 C 0.312 3.688 9 O -0.454 6.454 10 C -0.121 4.121 11 H 0.139 0.861 12 C -0.149 4.149 13 C -0.017 4.017 14 N -0.137 5.137 15 C -0.065 4.065 16 C -0.124 4.124 17 N -0.257 5.257 18 C -0.191 4.191 19 C -0.140 4.140 20 C -0.068 4.068 21 C -0.165 4.165 22 C -0.024 4.024 23 N -0.341 5.341 24 C -0.328 4.328 25 H 0.097 0.903 26 C -0.234 4.234 27 N -0.606 5.606 28 Si 0.764 3.236 29 H -0.204 1.204 30 H -0.245 1.245 31 H -0.198 1.198 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.253 0.747 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.194 0.806 46 H 0.102 0.898 47 H 0.131 0.869 48 H 0.098 0.902 49 H 0.103 0.897 50 H 0.037 0.963 51 H 0.063 0.937 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 21.765 -3.169 -19.788 29.586 hybrid contribution -0.501 -0.001 1.961 2.024 sum 21.264 -3.170 -17.827 27.929 Atomic orbital electron populations 1.21853 0.96113 1.00282 1.02353 1.21862 0.96460 0.96843 1.00832 1.21335 0.91265 0.92524 0.89835 0.92119 1.21706 0.93004 0.98187 0.82708 0.89687 1.45862 1.13876 1.62812 1.12822 1.20795 0.81206 0.76789 0.90012 1.90712 1.57201 1.44742 1.52742 1.21399 0.96590 1.03666 0.90465 0.86058 1.21640 0.94266 1.02154 0.96790 1.22252 0.93196 1.02898 0.83401 1.45495 1.10037 1.50402 1.07791 1.23785 0.98570 1.03681 0.80444 1.20313 0.87453 1.03496 1.01130 1.70418 1.00100 1.21017 1.34179 1.22125 1.00068 1.08335 0.88604 1.21129 0.85564 1.09462 0.97798 1.20202 0.98280 1.01702 0.86642 1.23017 0.97520 0.99317 0.96677 1.22043 0.87644 0.97548 0.95187 1.44897 1.00961 1.65703 1.22534 1.18574 0.83115 1.38613 0.92516 0.90332 1.25500 0.97540 1.01443 0.98897 1.69906 1.26742 1.45862 1.18125 0.86179 0.78782 0.79249 0.79352 1.20362 1.24536 1.19772 0.93041 0.92982 0.93338 0.90332 0.94166 0.74739 0.88163 0.91516 0.87467 0.86666 0.89195 0.89300 0.88562 0.80570 0.89766 0.86935 0.90247 0.89727 0.96306 0.93741 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 8.73 71.98 0.63 -4.61 16 2 C -0.12 -3.88 5.49 30.59 0.17 -3.71 16 3 C 0.16 5.18 3.03 45.34 0.14 5.32 16 4 H 0.06 1.88 7.68 -2.39 -0.02 1.86 16 5 C 0.15 4.21 2.76 46.18 0.13 4.34 16 6 H 0.09 2.65 7.41 -2.39 -0.02 2.63 16 7 N -0.70 -13.95 5.11 -436.93 -2.23 -16.18 16 8 C 0.52 10.50 7.13 87.66 0.62 11.13 16 9 O -0.57 -16.21 15.55 -3.06 -0.05 -16.26 16 10 C -0.10 -1.28 2.55 -11.32 -0.03 -1.31 16 11 H 0.12 1.18 8.12 -2.39 -0.02 1.16 16 12 C -0.11 -1.33 4.66 30.73 0.14 -1.18 16 13 C 0.10 0.86 6.61 86.48 0.57 1.43 16 14 N -0.45 -6.74 3.13 -500.13 -1.57 -8.31 16 15 C 0.20 3.45 7.94 138.25 1.10 4.55 16 16 C -0.07 -0.58 10.24 71.24 0.73 0.15 16 17 N -0.54 -12.63 11.27 -188.78 -2.13 -14.75 16 18 C -0.04 -0.92 11.84 83.30 0.99 0.06 16 19 C -0.02 -0.42 6.57 40.73 0.27 -0.15 16 20 C -0.03 -0.38 5.45 30.02 0.16 -0.22 16 21 C -0.13 -3.87 6.76 31.99 0.22 -3.65 16 22 C 0.10 4.10 4.69 86.85 0.41 4.51 16 23 N -0.62 -26.78 2.94 -668.14 -1.96 -28.74 16 24 C -0.20 -10.52 7.92 84.03 0.67 -9.86 16 25 H 0.08 4.42 6.94 -2.91 -0.02 4.40 16 26 C -0.04 -2.29 5.45 84.86 0.46 -1.82 16 27 N -0.96 -59.00 13.97 21.65 0.30 -58.70 16 28 Si 0.93 46.65 24.25 68.60 1.66 48.32 16 29 H -0.28 -13.22 6.52 99.48 0.65 -12.57 16 30 H -0.32 -16.29 7.11 99.48 0.71 -15.58 16 31 H -0.27 -13.24 6.47 99.48 0.64 -12.60 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 2.30 5.41 -2.39 -0.01 2.28 16 34 H 0.05 1.62 8.13 -2.38 -0.02 1.60 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.42 6.09 8.03 -92.70 -0.74 5.35 16 38 H 0.10 1.24 7.77 -2.39 -0.02 1.22 16 39 H 0.07 1.02 8.11 -2.39 -0.02 1.00 16 40 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.12 0.52 8.14 -2.39 -0.02 0.51 16 42 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 0.37 7.95 -2.38 -0.02 0.35 16 45 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.08 1.19 8.11 -2.38 -0.02 1.17 16 47 H 0.11 1.04 7.95 -2.39 -0.02 1.02 16 48 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 50 H 0.02 0.83 5.42 -2.39 -0.01 0.81 16 51 H 0.04 1.96 6.58 -2.39 -0.02 1.94 16 52 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -75.43 397.39 1.45 -73.98 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.05 Total: 15.68 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 7.37 Total: 4.97 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -7.59 Total: -126.68 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.05 Total: -16.26 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.66 Total: 48.32 kcal Total: -75.43 1.45 -73.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087725947.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.553 kcal (2) G-P(sol) polarization free energy of solvation -75.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds