Wall clock time and date at job start Wed Apr 1 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09003 * 110.50790 * 336.97611 * 5 3 2 7 7 N 1.46492 * 110.85044 * 100.19627 * 5 3 2 8 8 C 1.34784 * 120.00206 * 200.14768 * 7 5 3 9 9 O 1.21575 * 119.99332 * 359.97438 * 8 7 5 10 10 C 1.47698 * 120.00380 * 180.02562 * 8 7 5 11 11 N 1.32208 * 126.67915 * 359.68795 * 10 8 7 12 12 N 1.28852 * 110.15485 * 179.81531 * 11 10 8 13 13 C 1.46494 * 124.98018 * 180.11630 * 12 11 10 14 14 C 1.34313 * 110.03441 * 0.39032 * 12 11 10 15 15 C 1.35576 * 107.22149 * 359.83397 * 14 12 11 16 16 C 1.50379 * 124.62290 * 179.79841 * 15 14 12 17 17 C 1.53472 * 108.28339 * 343.75431 * 16 15 14 18 18 C 1.53103 * 109.51052 * 49.48817 * 17 16 15 19 19 C 1.50710 * 128.90180 * 179.88425 * 14 12 11 20 20 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 21 21 C 1.54915 * 101.58149 * 35.30574 * 20 5 3 22 22 N 1.47013 * 109.88115 * 66.83036 * 3 2 1 23 23 C 1.36939 * 125.65006 * 298.38988 * 22 3 2 24 24 H 1.07998 * 120.00219 * 325.76779 * 23 22 3 25 25 C 1.38811 * 119.99832 * 145.76486 * 23 22 3 26 26 N 1.31621 * 120.00421 * 339.05074 * 25 23 22 27 27 Si 1.86794 * 120.00074 * 159.04938 * 25 23 22 28 28 H 1.48496 * 109.47774 * 180.02562 * 27 25 23 29 29 H 1.48501 * 109.47174 * 300.00422 * 27 25 23 30 30 H 1.48505 * 109.47224 * 59.99674 * 27 25 23 31 31 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 32 32 H 1.09001 * 109.47409 * 291.18103 * 1 2 3 33 33 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 34 34 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 35 35 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 36 36 H 0.96998 * 120.00285 * 20.14854 * 7 5 3 37 37 H 1.09004 * 109.46823 * 270.31091 * 13 12 11 38 38 H 1.08997 * 109.47629 * 30.31299 * 13 12 11 39 39 H 1.09004 * 109.46968 * 150.31521 * 13 12 11 40 40 H 1.09000 * 109.69805 * 103.45067 * 16 15 14 41 41 H 1.08998 * 109.70253 * 224.05301 * 16 15 14 42 42 H 1.09003 * 109.46437 * 169.49537 * 17 16 15 43 43 H 1.09003 * 109.46444 * 289.46988 * 17 16 15 44 44 H 1.08994 * 109.45038 * 50.00048 * 18 17 16 45 45 H 1.09007 * 109.44234 * 169.93470 * 18 17 16 46 46 H 1.09000 * 109.69566 * 43.59047 * 19 14 12 47 47 H 1.09003 * 109.72468 * 283.03034 * 19 14 12 48 48 H 1.08993 * 111.00570 * 277.22644 * 20 5 3 49 49 H 1.09001 * 111.00192 * 153.37656 * 20 5 3 50 50 H 1.09002 * 110.36505 * 204.14984 * 21 20 5 51 51 H 1.09001 * 110.46109 * 81.87990 * 21 20 5 52 52 H 0.97003 * 119.99485 * 353.68314 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 3.9978 0.5119 0.2234 7 7 3.9925 1.7425 -1.4950 8 6 5.2318 1.4106 -1.9083 9 8 6.0062 0.8758 -1.1388 10 6 5.6492 1.6978 -3.2957 11 7 4.9178 2.2667 -4.2388 12 7 5.5982 2.3668 -5.3284 13 6 5.1025 2.9502 -6.5774 14 6 6.8265 1.8525 -5.1529 15 6 6.8988 1.4142 -3.8719 16 6 8.1072 0.7620 -3.2590 17 6 9.0420 0.3184 -4.3926 18 6 9.2549 1.4820 -5.3645 19 6 7.9593 1.7487 -6.1415 20 6 3.9906 2.6157 0.8286 21 6 2.9392 2.4820 1.9584 22 7 1.6938 2.0952 1.2710 23 6 0.4247 2.3040 1.7413 24 1 -0.3790 2.5148 1.0514 25 6 0.1713 2.2446 3.1048 26 7 1.0006 1.6038 3.9011 27 14 -1.3467 3.0740 3.8096 28 1 -1.3870 2.8663 5.2794 29 1 -1.2966 4.5291 3.5171 30 1 -2.5632 2.4868 3.1927 31 1 -0.3634 -1.0155 -0.1576 32 1 -0.3634 0.3713 0.9582 33 1 -0.3634 0.6442 -0.8007 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.3747 2.1696 -2.1088 37 1 4.6354 2.1723 -7.1815 38 1 4.3691 3.7240 -6.3512 39 1 5.9344 3.3881 -7.1291 40 1 8.6227 1.4748 -2.6153 41 1 7.8001 -0.1057 -2.6752 42 1 10.0015 0.0145 -3.9742 43 1 8.5951 -0.5218 -4.9240 44 1 9.5332 2.3755 -4.8057 45 1 10.0514 1.2290 -6.0644 46 1 8.0494 2.6826 -6.6963 47 1 7.7701 0.9276 -6.8330 48 1 3.9053 3.5799 0.3275 49 1 4.9992 2.4652 1.2137 50 1 2.8095 3.4354 2.4706 51 1 3.2374 1.7092 2.6669 52 1 1.7378 1.0964 3.5266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087735310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:18 Heat of formation + Delta-G solvation = 45.082446 kcal Electronic energy + Delta-G solvation = -31329.795559 eV Core-core repulsion = 27330.622363 eV Total energy + Delta-G solvation = -3999.173196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.98784 -39.46099 -37.70585 -37.20101 -34.11307 -33.94575 -32.45556 -31.85090 -30.59420 -30.04014 -28.73270 -27.64062 -26.56396 -24.45918 -23.99528 -22.86422 -22.16817 -21.65384 -20.32273 -20.11958 -19.44156 -19.02263 -17.39861 -17.24650 -16.72198 -16.38021 -15.88305 -15.02519 -14.64638 -14.41495 -14.25727 -14.05896 -13.91451 -13.86296 -13.68715 -13.56693 -13.27600 -13.11527 -12.96755 -12.82774 -12.79933 -12.30755 -12.24006 -12.01376 -11.52001 -11.23489 -11.10526 -11.00253 -10.93417 -10.85343 -10.78613 -10.71425 -10.41690 -10.16945 -10.07951 -10.00656 -9.81655 -9.72748 -9.34441 -9.24914 -8.74175 -8.57372 -8.35479 -6.79796 -5.96769 -3.27233 1.53270 1.97038 2.23343 3.38590 3.50294 3.54001 3.55921 3.71578 4.09221 4.18587 4.49160 4.52350 4.59568 4.69177 4.74621 4.87134 4.94169 5.03041 5.12198 5.17542 5.25502 5.29575 5.36795 5.40702 5.47054 5.52570 5.59848 5.67286 5.78829 5.82838 5.87962 6.02218 6.07044 6.09244 6.13695 6.16810 6.25441 6.35262 6.41292 6.50999 6.59351 6.62539 6.66719 6.76839 6.89153 6.99781 7.13575 7.20181 7.42055 7.63838 7.91723 8.00170 8.45450 8.56667 9.06667 9.82679 10.45702 11.26164 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.002405 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.036797 B =11641.852365 C =12143.025817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.155 3.845 4 H 0.036 0.964 5 C 0.136 3.864 6 H 0.093 0.907 7 N -0.702 5.702 8 C 0.602 3.398 9 O -0.533 6.533 10 C -0.004 4.004 11 N -0.266 5.266 12 N -0.277 5.277 13 C 0.087 3.913 14 C 0.003 3.997 15 C -0.143 4.143 16 C -0.042 4.042 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.044 4.044 20 C -0.143 4.143 21 C 0.141 3.859 22 N -0.588 5.588 23 C -0.322 4.322 24 H 0.056 0.944 25 C -0.021 4.021 26 N -0.912 5.912 27 Si 1.067 2.933 28 H -0.286 1.286 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.028 0.972 32 H 0.091 0.909 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.403 0.597 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.048 0.952 51 H 0.031 0.969 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.426 0.832 -23.847 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C 0.048 3.952 4 H 0.054 0.946 5 C 0.031 3.969 6 H 0.111 0.889 7 N -0.352 5.352 8 C 0.386 3.614 9 O -0.408 6.408 10 C -0.163 4.163 11 N -0.102 5.102 12 N -0.064 5.064 13 C -0.054 4.054 14 C -0.123 4.123 15 C -0.153 4.153 16 C -0.080 4.080 17 C -0.158 4.158 18 C -0.152 4.152 19 C -0.083 4.083 20 C -0.183 4.183 21 C 0.016 3.984 22 N -0.315 5.315 23 C -0.451 4.451 24 H 0.074 0.926 25 C -0.225 4.225 26 N -0.551 5.551 27 Si 0.897 3.103 28 H -0.211 1.211 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.238 0.762 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.066 0.934 51 H 0.049 0.951 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.943 1.346 -22.133 25.675 hybrid contribution 1.015 -0.432 -1.821 2.129 sum 13.958 0.914 -23.954 27.739 Atomic orbital electron populations 1.21847 0.95672 0.98673 1.04156 1.21857 0.97026 0.97558 0.99602 1.21236 0.89666 0.92394 0.91878 0.94623 1.22110 0.95904 0.99051 0.79803 0.88888 1.45913 1.14096 1.61249 1.13974 1.16850 0.82080 0.78407 0.84061 1.90770 1.52555 1.43314 1.54124 1.21656 0.93620 1.06289 0.94738 1.73839 1.23305 1.20127 0.92905 1.44999 1.08951 1.42589 1.09821 1.22142 1.01832 0.99950 0.81474 1.21067 0.88966 1.04594 0.97650 1.19884 0.96533 1.06048 0.92871 1.19979 0.91161 1.00328 0.96552 1.21667 0.99785 0.97775 0.96607 1.21565 0.95682 0.99623 0.98356 1.20190 0.90678 1.02270 0.95118 1.23180 0.99367 0.97819 0.97925 1.21591 0.85540 0.98396 0.92910 1.44426 1.01852 1.65774 1.19412 1.19519 0.84904 1.47556 0.93128 0.92605 1.25985 1.03850 0.98885 0.93785 1.70749 1.17631 1.28656 1.38098 0.83496 0.74749 0.75882 0.76193 1.21114 1.22039 1.21898 0.95323 0.89042 0.94387 0.94397 0.92525 0.76157 0.89722 0.88405 0.88845 0.90633 0.89713 0.91160 0.91774 0.91306 0.90976 0.90582 0.90108 0.91705 0.91529 0.93411 0.95118 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.15 37.16 0.34 -2.67 16 2 C -0.12 -2.48 5.45 -26.73 -0.15 -2.63 16 3 C 0.16 3.28 2.99 -66.95 -0.20 3.08 16 4 H 0.04 0.76 7.68 -51.93 -0.40 0.36 16 5 C 0.14 2.62 2.76 -66.09 -0.18 2.44 16 6 H 0.09 1.91 7.40 -51.93 -0.38 1.53 16 7 N -0.70 -11.96 5.20 -53.01 -0.28 -12.23 16 8 C 0.60 10.51 7.82 -12.39 -0.10 10.41 16 9 O -0.53 -10.49 15.53 5.30 0.08 -10.41 16 10 C 0.00 -0.06 7.12 -82.99 -0.59 -0.65 16 11 N -0.27 -3.67 11.71 33.28 0.39 -3.28 16 12 N -0.28 -2.92 3.69 -63.97 -0.24 -3.15 16 13 C 0.09 0.47 11.17 59.84 0.67 1.13 16 14 C 0.00 0.03 6.71 -82.45 -0.55 -0.53 16 15 C -0.14 -1.88 5.99 -104.88 -0.63 -2.51 16 16 C -0.04 -0.48 5.54 -27.79 -0.15 -0.64 16 17 C -0.12 -0.96 5.91 -26.43 -0.16 -1.11 16 18 C -0.11 -0.72 5.89 -26.47 -0.16 -0.87 16 19 C -0.04 -0.28 5.90 -27.67 -0.16 -0.44 16 20 C -0.14 -2.85 6.77 -24.58 -0.17 -3.02 16 21 C 0.14 3.33 5.81 -2.53 -0.01 3.32 16 22 N -0.59 -14.57 2.82 -162.57 -0.46 -15.03 16 23 C -0.32 -8.72 7.01 -15.06 -0.11 -8.82 16 24 H 0.06 1.52 7.66 -52.49 -0.40 1.12 16 25 C -0.02 -0.60 5.23 -17.43 -0.09 -0.69 16 26 N -0.91 -27.23 13.14 55.49 0.73 -26.50 16 27 Si 1.07 25.14 29.97 -169.99 -5.09 20.04 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 30 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 2.19 5.69 -51.93 -0.30 1.90 16 33 H 0.04 0.74 8.12 -51.92 -0.42 0.32 16 34 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.40 6.37 8.05 -40.82 -0.33 6.04 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.25 7.52 -51.93 -0.39 -0.14 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.11 7.67 -51.93 -0.40 0.71 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 44 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 45 H 0.07 0.32 8.14 -51.92 -0.42 -0.11 16 46 H 0.08 0.34 7.73 -51.93 -0.40 -0.06 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 50 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 51 H 0.03 0.78 6.68 -51.93 -0.35 0.43 16 52 H 0.27 8.16 6.19 -40.82 -0.25 7.91 16 LS Contribution 404.93 15.07 6.10 6.10 Total: -1.00 -33.40 404.93 -9.89 -43.29 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -8.73 Total: 5.38 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.40 Total: -4.21 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.15 Total: -60.19 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.09 Total: 20.04 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.40 -9.89 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087735310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.369 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds