Wall clock time and date at job start Wed Apr 1 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09003 * 110.50790 * 336.97611 * 5 3 2 7 7 N 1.46492 * 110.85044 * 100.19627 * 5 3 2 8 8 C 1.34784 * 120.00206 * 200.14768 * 7 5 3 9 9 O 1.21575 * 119.99332 * 359.97438 * 8 7 5 10 10 C 1.47698 * 120.00380 * 180.02562 * 8 7 5 11 11 N 1.32208 * 126.67915 * 359.68795 * 10 8 7 12 12 N 1.28852 * 110.15485 * 179.81531 * 11 10 8 13 13 C 1.46494 * 124.98018 * 180.11630 * 12 11 10 14 14 C 1.34313 * 110.03441 * 0.39032 * 12 11 10 15 15 C 1.35576 * 107.22149 * 359.83397 * 14 12 11 16 16 C 1.50379 * 124.62290 * 179.79841 * 15 14 12 17 17 C 1.53472 * 108.28339 * 343.75431 * 16 15 14 18 18 C 1.53103 * 109.51052 * 49.48817 * 17 16 15 19 19 C 1.50710 * 128.90180 * 179.88425 * 14 12 11 20 20 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 21 21 C 1.54915 * 101.58149 * 35.30574 * 20 5 3 22 22 N 1.47013 * 109.88115 * 66.83036 * 3 2 1 23 23 C 1.36939 * 125.65006 * 298.38988 * 22 3 2 24 24 H 1.07998 * 120.00219 * 325.76779 * 23 22 3 25 25 C 1.38811 * 119.99832 * 145.76486 * 23 22 3 26 26 N 1.31621 * 120.00421 * 339.05074 * 25 23 22 27 27 Si 1.86794 * 120.00074 * 159.04938 * 25 23 22 28 28 H 1.48496 * 109.47774 * 180.02562 * 27 25 23 29 29 H 1.48501 * 109.47174 * 300.00422 * 27 25 23 30 30 H 1.48505 * 109.47224 * 59.99674 * 27 25 23 31 31 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 32 32 H 1.09001 * 109.47409 * 291.18103 * 1 2 3 33 33 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 34 34 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 35 35 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 36 36 H 0.96998 * 120.00285 * 20.14854 * 7 5 3 37 37 H 1.09004 * 109.46823 * 270.31091 * 13 12 11 38 38 H 1.08997 * 109.47629 * 30.31299 * 13 12 11 39 39 H 1.09004 * 109.46968 * 150.31521 * 13 12 11 40 40 H 1.09000 * 109.69805 * 103.45067 * 16 15 14 41 41 H 1.08998 * 109.70253 * 224.05301 * 16 15 14 42 42 H 1.09003 * 109.46437 * 169.49537 * 17 16 15 43 43 H 1.09003 * 109.46444 * 289.46988 * 17 16 15 44 44 H 1.08994 * 109.45038 * 50.00048 * 18 17 16 45 45 H 1.09007 * 109.44234 * 169.93470 * 18 17 16 46 46 H 1.09000 * 109.69566 * 43.59047 * 19 14 12 47 47 H 1.09003 * 109.72468 * 283.03034 * 19 14 12 48 48 H 1.08993 * 111.00570 * 277.22644 * 20 5 3 49 49 H 1.09001 * 111.00192 * 153.37656 * 20 5 3 50 50 H 1.09002 * 110.36505 * 204.14984 * 21 20 5 51 51 H 1.09001 * 110.46109 * 81.87990 * 21 20 5 52 52 H 0.97003 * 119.99485 * 353.68314 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 3.9978 0.5119 0.2234 7 7 3.9925 1.7425 -1.4950 8 6 5.2318 1.4106 -1.9083 9 8 6.0062 0.8758 -1.1388 10 6 5.6492 1.6978 -3.2957 11 7 4.9178 2.2667 -4.2388 12 7 5.5982 2.3668 -5.3284 13 6 5.1025 2.9502 -6.5774 14 6 6.8265 1.8525 -5.1529 15 6 6.8988 1.4142 -3.8719 16 6 8.1072 0.7620 -3.2590 17 6 9.0420 0.3184 -4.3926 18 6 9.2549 1.4820 -5.3645 19 6 7.9593 1.7487 -6.1415 20 6 3.9906 2.6157 0.8286 21 6 2.9392 2.4820 1.9584 22 7 1.6938 2.0952 1.2710 23 6 0.4247 2.3040 1.7413 24 1 -0.3790 2.5148 1.0514 25 6 0.1713 2.2446 3.1048 26 7 1.0006 1.6038 3.9011 27 14 -1.3467 3.0740 3.8096 28 1 -1.3870 2.8663 5.2794 29 1 -1.2966 4.5291 3.5171 30 1 -2.5632 2.4868 3.1927 31 1 -0.3634 -1.0155 -0.1576 32 1 -0.3634 0.3713 0.9582 33 1 -0.3634 0.6442 -0.8007 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.3747 2.1696 -2.1088 37 1 4.6354 2.1723 -7.1815 38 1 4.3691 3.7240 -6.3512 39 1 5.9344 3.3881 -7.1291 40 1 8.6227 1.4748 -2.6153 41 1 7.8001 -0.1057 -2.6752 42 1 10.0015 0.0145 -3.9742 43 1 8.5951 -0.5218 -4.9240 44 1 9.5332 2.3755 -4.8057 45 1 10.0514 1.2290 -6.0644 46 1 8.0494 2.6826 -6.6963 47 1 7.7701 0.9276 -6.8330 48 1 3.9053 3.5799 0.3275 49 1 4.9992 2.4652 1.2137 50 1 2.8095 3.4354 2.4706 51 1 3.2374 1.7092 2.6669 52 1 1.7378 1.0964 3.5266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087735310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:17 Heat of formation + Delta-G solvation = 24.311977 kcal Electronic energy + Delta-G solvation = -31330.696234 eV Core-core repulsion = 27330.622363 eV Total energy + Delta-G solvation = -4000.073871 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.86523 -40.98547 -39.38054 -37.86805 -35.78755 -34.79705 -34.25481 -33.63629 -31.25413 -30.87587 -30.49692 -28.93553 -27.90389 -26.27030 -24.85040 -24.01729 -23.39591 -22.88372 -21.90293 -21.68877 -20.85644 -19.96083 -19.24613 -18.36245 -17.71322 -17.42378 -17.25790 -16.22174 -16.08108 -15.75776 -15.64703 -15.55485 -15.19662 -14.95608 -14.71159 -14.63269 -14.56410 -14.37349 -14.04140 -13.96622 -13.81164 -13.60501 -13.33817 -13.32380 -12.88409 -12.86612 -12.69234 -12.53764 -12.21727 -11.92203 -11.90667 -11.86339 -11.77119 -11.71677 -11.67404 -11.60846 -11.55419 -11.38670 -11.10472 -10.45329 -10.28032 -9.98345 -9.58627 -8.90117 -8.13723 -5.44064 0.46156 1.07238 1.52206 1.59103 1.66746 1.84702 2.04912 2.29346 2.66496 3.24475 3.27326 3.46366 3.54197 3.70493 3.74773 3.83908 4.02910 4.04630 4.08226 4.23527 4.24756 4.29796 4.35479 4.35615 4.41358 4.47322 4.53687 4.59077 4.63753 4.65819 4.66631 4.77319 4.84518 4.90988 4.96272 4.97697 5.02335 5.04433 5.12196 5.14797 5.20303 5.23783 5.29747 5.32435 5.45790 5.48669 5.51271 5.63699 5.87483 5.89858 6.38120 6.40513 6.85662 6.95559 7.10996 7.71903 8.36966 9.06361 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.002405 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.036797 B =11641.852365 C =12143.025817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.156 3.844 4 H 0.046 0.954 5 C 0.151 3.849 6 H 0.079 0.921 7 N -0.695 5.695 8 C 0.602 3.398 9 O -0.564 6.564 10 C -0.039 4.039 11 N -0.282 5.282 12 N -0.268 5.268 13 C 0.072 3.928 14 C 0.019 3.981 15 C -0.172 4.172 16 C -0.043 4.043 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.042 4.042 20 C -0.128 4.128 21 C 0.147 3.853 22 N -0.605 5.605 23 C -0.315 4.315 24 H 0.055 0.945 25 C -0.075 4.075 26 N -0.945 5.945 27 Si 1.114 2.886 28 H -0.295 1.295 29 H -0.280 1.280 30 H -0.272 1.272 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.411 0.589 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.027 0.973 51 H 0.007 0.993 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.039 1.677 -28.288 32.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.050 3.950 4 H 0.063 0.937 5 C 0.046 3.954 6 H 0.097 0.903 7 N -0.345 5.345 8 C 0.388 3.612 9 O -0.441 6.441 10 C -0.196 4.196 11 N -0.119 5.119 12 N -0.055 5.055 13 C -0.066 4.066 14 C -0.108 4.108 15 C -0.183 4.183 16 C -0.081 4.081 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.080 4.080 20 C -0.167 4.167 21 C 0.021 3.979 22 N -0.331 5.331 23 C -0.444 4.444 24 H 0.073 0.927 25 C -0.272 4.272 26 N -0.586 5.586 27 Si 0.939 3.061 28 H -0.222 1.222 29 H -0.206 1.206 30 H -0.198 1.198 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.248 0.752 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.147 0.853 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.046 0.954 51 H 0.025 0.975 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.543 2.204 -26.636 29.962 hybrid contribution 0.861 -0.695 -0.609 1.263 sum 14.404 1.509 -27.245 30.855 Atomic orbital electron populations 1.21720 0.95352 1.00155 1.02386 1.21788 0.97218 0.97000 0.99576 1.21300 0.90869 0.92594 0.90286 0.93678 1.21734 0.94540 0.98070 0.81081 0.90313 1.45724 1.14429 1.61469 1.12917 1.17205 0.81495 0.77475 0.85048 1.90744 1.53314 1.44667 1.55386 1.21389 0.95240 1.08950 0.94027 1.73757 1.23888 1.20521 0.93782 1.45545 1.08837 1.41031 1.10096 1.22652 1.03592 1.00660 0.79671 1.21672 0.89608 1.02200 0.97316 1.20188 0.96276 1.07419 0.94391 1.19951 0.91681 0.98837 0.97613 1.21652 0.99200 0.98686 0.95795 1.21589 0.96687 0.98358 0.98367 1.20439 0.88533 1.04650 0.94408 1.23027 0.98390 0.98608 0.96672 1.21432 0.86438 0.96437 0.93610 1.44628 1.01600 1.66535 1.20298 1.19685 0.85697 1.45853 0.93148 0.92689 1.27280 1.05859 0.99299 0.94719 1.70869 1.18563 1.30804 1.38400 0.82866 0.72540 0.75729 0.74976 1.22174 1.20641 1.19802 0.93074 0.92716 0.93199 0.91840 0.94988 0.75210 0.87901 0.88120 0.85346 0.91885 0.92542 0.90113 0.91529 0.92010 0.88034 0.87564 0.87984 0.90720 0.90869 0.95418 0.97536 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 9.15 71.98 0.66 -4.98 16 2 C -0.12 -4.79 5.45 30.59 0.17 -4.62 16 3 C 0.16 6.62 2.99 45.35 0.14 6.75 16 4 H 0.05 1.87 7.68 -2.39 -0.02 1.85 16 5 C 0.15 5.94 2.76 46.19 0.13 6.07 16 6 H 0.08 3.36 7.40 -2.39 -0.02 3.34 16 7 N -0.69 -23.80 5.20 -439.90 -2.29 -26.09 16 8 C 0.60 21.55 7.82 86.74 0.68 22.23 16 9 O -0.56 -23.26 15.53 -3.95 -0.06 -23.32 16 10 C -0.04 -1.21 7.12 42.14 0.30 -0.91 16 11 N -0.28 -7.45 11.71 -48.63 -0.57 -8.02 16 12 N -0.27 -4.92 3.69 -356.29 -1.31 -6.23 16 13 C 0.07 0.49 11.17 127.77 1.43 1.92 16 14 C 0.02 0.34 6.71 41.57 0.28 0.62 16 15 C -0.17 -4.45 5.99 -20.03 -0.12 -4.57 16 16 C -0.04 -1.00 5.54 29.91 0.17 -0.84 16 17 C -0.12 -1.64 5.91 30.79 0.18 -1.46 16 18 C -0.11 -1.01 5.89 30.77 0.18 -0.83 16 19 C -0.04 -0.34 5.90 29.99 0.18 -0.16 16 20 C -0.13 -5.19 6.77 31.99 0.22 -4.97 16 21 C 0.15 7.24 5.81 86.86 0.50 7.74 16 22 N -0.60 -30.70 2.82 -668.24 -1.88 -32.58 16 23 C -0.31 -17.31 7.01 84.03 0.59 -16.72 16 24 H 0.06 3.01 7.66 -2.91 -0.02 2.99 16 25 C -0.07 -4.25 5.23 84.86 0.44 -3.81 16 26 N -0.94 -58.66 13.14 21.65 0.28 -58.37 16 27 Si 1.11 51.36 29.97 68.60 2.06 53.42 16 28 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 29 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 30 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 31 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.05 2.64 5.69 -2.39 -0.01 2.63 16 33 H 0.05 1.87 8.12 -2.38 -0.02 1.85 16 34 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.41 12.81 8.05 -92.71 -0.75 12.06 16 37 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.13 -0.01 7.52 -2.39 -0.02 -0.02 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.60 7.67 -2.39 -0.02 1.58 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 44 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 45 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 46 H 0.11 0.30 7.73 -2.39 -0.02 0.28 16 47 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 49 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 50 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 51 H 0.01 0.37 6.68 -2.39 -0.02 0.35 16 52 H 0.26 16.24 6.19 -92.71 -0.57 15.66 16 Total: -1.00 -76.99 404.93 2.70 -74.29 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.37 Total: 25.44 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 6.11 Total: 1.46 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -5.77 Total: -131.30 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.06 Total: -23.32 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.06 Total: 53.42 kcal Total: -76.99 2.70 -74.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087735310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.599 kcal (2) G-P(sol) polarization free energy of solvation -76.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds