Wall clock time and date at job start Wed Apr 1 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46727 * 2 1 4 4 H 1.09007 * 109.87293 * 301.96436 * 3 2 1 5 5 C 1.54321 * 109.87928 * 180.95486 * 3 2 1 6 6 H 1.08998 * 110.72251 * 336.74584 * 5 3 2 7 7 N 1.46502 * 110.72363 * 100.02629 * 5 3 2 8 8 C 1.34783 * 119.99642 * 204.99871 * 7 5 3 9 9 O 1.21544 * 120.00114 * 359.97438 * 8 7 5 10 10 C 1.47832 * 119.99665 * 179.97438 * 8 7 5 11 11 C 1.39972 * 120.94069 * 321.01208 * 10 8 7 12 12 N 1.32127 * 118.92377 * 179.71432 * 11 10 8 13 13 C 1.31886 * 120.96559 * 0.57548 * 12 11 10 14 14 C 1.50702 * 118.95308 * 179.72445 * 13 12 11 15 15 N 1.31851 * 122.09794 * 359.69217 * 13 12 11 16 16 C 1.32167 * 120.96728 * 0.02562 * 15 13 12 17 17 C 1.50693 * 120.54031 * 180.02562 * 16 15 13 18 18 C 1.52994 * 109.47266 * 291.29461 * 17 16 15 19 19 C 1.52997 * 109.47093 * 51.29720 * 17 16 15 20 20 C 1.55403 * 102.82515 * 218.47806 * 5 3 2 21 21 C 1.54910 * 101.66778 * 35.33675 * 20 5 3 22 22 N 1.47018 * 109.88619 * 62.98039 * 3 2 1 23 23 C 1.36930 * 125.65055 * 298.39639 * 22 3 2 24 24 H 1.08004 * 120.00319 * 338.41922 * 23 22 3 25 25 C 1.38816 * 120.00141 * 158.42198 * 23 22 3 26 26 N 1.31624 * 119.99881 * 159.08201 * 25 23 22 27 27 Si 1.86802 * 119.99836 * 339.09040 * 25 23 22 28 28 H 1.48496 * 109.47075 * 85.47315 * 27 25 23 29 29 H 1.48496 * 109.46703 * 205.47262 * 27 25 23 30 30 H 1.48500 * 109.47125 * 325.46885 * 27 25 23 31 31 H 1.09002 * 109.47597 * 290.53318 * 1 2 3 32 32 H 1.08995 * 109.47477 * 50.53907 * 1 2 3 33 33 H 1.09001 * 109.46874 * 170.53768 * 1 2 3 34 34 H 1.08999 * 109.47134 * 239.99733 * 2 1 3 35 35 H 1.09001 * 109.47066 * 119.99756 * 2 1 3 36 36 H 0.96998 * 119.99947 * 24.99201 * 7 5 3 37 37 H 1.08007 * 120.53731 * 359.97438 * 11 10 8 38 38 H 1.09000 * 109.47049 * 269.97272 * 14 13 12 39 39 H 1.08996 * 109.47223 * 29.97376 * 14 13 12 40 40 H 1.09002 * 109.47293 * 149.97436 * 14 13 12 41 41 H 1.09005 * 109.46966 * 171.29470 * 17 16 15 42 42 H 1.09005 * 109.47121 * 60.00104 * 18 17 16 43 43 H 1.09004 * 109.47595 * 179.97438 * 18 17 16 44 44 H 1.09000 * 109.47450 * 299.99729 * 18 17 16 45 45 H 1.09006 * 109.47344 * 59.99889 * 19 17 16 46 46 H 1.09000 * 109.47540 * 179.97438 * 19 17 16 47 47 H 1.09005 * 109.47011 * 299.99723 * 19 17 16 48 48 H 1.09000 * 110.89238 * 277.26412 * 20 5 3 49 49 H 1.09002 * 111.03855 * 153.47137 * 20 5 3 50 50 H 1.08995 * 110.36842 * 204.23521 * 21 20 5 51 51 H 1.08999 * 110.36709 * 81.91392 * 21 20 5 52 52 H 0.97001 * 119.99284 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6517 1.9728 -0.8697 5 6 3.5829 1.4537 -0.0242 6 1 3.9815 0.5176 0.3669 7 7 4.0783 1.7035 -1.3801 8 6 5.3039 1.2730 -1.7396 9 8 5.9982 0.6781 -0.9388 10 6 5.8036 1.5246 -3.1080 11 6 4.9518 1.4274 -4.2144 12 7 5.4392 1.6662 -5.4191 13 6 6.7090 1.9805 -5.5873 14 6 7.2183 2.2375 -6.9821 15 7 7.5469 2.0776 -4.5739 16 6 7.1430 1.8607 -3.3343 17 6 8.1088 1.9749 -2.1832 18 6 9.1261 0.8345 -2.2559 19 6 8.8400 3.3164 -2.2621 20 6 3.9341 2.6371 0.9198 21 6 2.8142 2.5313 1.9849 22 7 1.6144 2.1233 1.2316 23 6 0.3184 2.3416 1.6159 24 1 -0.4720 2.3328 0.8798 25 6 0.0202 2.5743 2.9515 26 7 -1.1028 3.1772 3.2798 27 14 1.2130 2.0320 4.2829 28 1 2.2399 3.0852 4.4864 29 1 0.4723 1.8112 5.5509 30 1 1.8748 0.7684 3.8699 31 1 -0.3634 0.3604 0.9624 32 1 -0.3634 0.6531 -0.7934 33 1 -0.3633 -1.0137 -0.1690 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.5243 2.1785 -2.0190 37 1 3.9120 1.1656 -4.0851 38 1 7.5750 1.3037 -7.4165 39 1 6.4114 2.6386 -7.5954 40 1 8.0369 2.9563 -6.9434 41 1 7.5615 1.9141 -1.2424 42 1 9.6733 0.8952 -3.1967 43 1 9.8250 0.9172 -1.4236 44 1 8.6051 -0.1214 -2.1996 45 1 8.1152 4.1290 -2.2103 46 1 9.5383 3.3993 -1.4293 47 1 9.3872 3.3772 -3.2029 48 1 3.8797 3.5874 0.3887 49 1 4.9167 2.4994 1.3711 50 1 2.6521 3.4977 2.4622 51 1 3.0691 1.7774 2.7297 52 1 -1.3109 3.3401 4.2131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087747895.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:40 Heat of formation + Delta-G solvation = 25.842897 kcal Electronic energy + Delta-G solvation = -31520.608149 eV Core-core repulsion = 27520.600663 eV Total energy + Delta-G solvation = -4000.007486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.71494 -39.78241 -38.12783 -36.39519 -34.41417 -33.78077 -32.58063 -32.53814 -32.03977 -29.81416 -28.86692 -27.33603 -27.14420 -25.23557 -24.61795 -23.64038 -22.23758 -21.44462 -20.91035 -20.53129 -19.61185 -18.14354 -17.69277 -17.04197 -16.31579 -16.21448 -15.71146 -15.15930 -15.07944 -14.85208 -14.48325 -14.15404 -14.12414 -13.65189 -13.60460 -13.52845 -13.18492 -12.90697 -12.78880 -12.78204 -12.53015 -12.36157 -12.25517 -11.98601 -11.91541 -11.76820 -11.52906 -11.45992 -11.18473 -11.09591 -10.98629 -10.81000 -10.70629 -10.46904 -10.32403 -10.12356 -9.97147 -9.83291 -9.70159 -9.55724 -9.35745 -8.95551 -8.66052 -7.09641 -5.99305 -3.31698 0.21437 0.70931 2.52676 2.96456 3.32462 3.37256 3.46697 3.48160 3.50725 3.67134 3.98465 4.42087 4.50782 4.55157 4.76460 4.85596 4.90408 4.93205 4.99288 5.07966 5.12810 5.15660 5.22292 5.24237 5.44378 5.47737 5.50705 5.53454 5.64028 5.70582 5.73484 5.80552 5.82270 5.86565 5.98340 6.03167 6.04558 6.08216 6.15094 6.22287 6.31864 6.47736 6.54778 6.57022 6.60451 6.67639 6.69664 6.95919 7.30220 7.38063 7.67830 7.70983 8.03651 8.26553 8.77375 9.62899 10.11146 11.16050 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016716 B = 0.002817 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.656856 B = 9935.738372 C =10818.342391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.158 3.842 4 H 0.046 0.954 5 C 0.132 3.868 6 H 0.101 0.899 7 N -0.705 5.705 8 C 0.569 3.431 9 O -0.524 6.524 10 C -0.245 4.245 11 C 0.187 3.813 12 N -0.524 5.524 13 C 0.333 3.667 14 C -0.087 4.087 15 N -0.515 5.515 16 C 0.242 3.758 17 C -0.061 4.061 18 C -0.132 4.132 19 C -0.140 4.140 20 C -0.140 4.140 21 C 0.112 3.888 22 N -0.598 5.598 23 C -0.234 4.234 24 H 0.097 0.903 25 C 0.023 3.977 26 N -0.908 5.908 27 Si 0.880 3.120 28 H -0.286 1.286 29 H -0.303 1.303 30 H -0.274 1.274 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.401 0.599 37 H 0.175 0.825 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.062 0.938 51 H 0.028 0.972 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.651 -2.173 -16.951 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.051 3.949 4 H 0.064 0.936 5 C 0.028 3.972 6 H 0.119 0.881 7 N -0.355 5.355 8 C 0.354 3.646 9 O -0.401 6.401 10 C -0.252 4.252 11 C 0.020 3.980 12 N -0.238 5.238 13 C 0.067 3.933 14 C -0.145 4.145 15 N -0.229 5.229 16 C 0.095 3.905 17 C -0.080 4.080 18 C -0.189 4.189 19 C -0.198 4.198 20 C -0.180 4.180 21 C -0.013 4.013 22 N -0.324 5.324 23 C -0.361 4.361 24 H 0.114 0.886 25 C -0.175 4.175 26 N -0.551 5.551 27 Si 0.711 3.289 28 H -0.213 1.213 29 H -0.231 1.231 30 H -0.200 1.200 31 H 0.112 0.888 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.236 0.764 37 H 0.192 0.808 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.129 0.871 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.080 0.920 51 H 0.046 0.954 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.256 -2.341 -17.149 25.157 hybrid contribution -0.197 -0.328 1.416 1.466 sum 18.059 -2.669 -15.734 24.100 Atomic orbital electron populations 1.21937 0.95158 0.99060 1.04694 1.21913 0.97456 0.97149 0.99967 1.21183 0.89418 0.92505 0.91792 0.93612 1.22240 0.95076 0.99509 0.80391 0.88106 1.45974 1.16578 1.57874 1.15074 1.17731 0.81784 0.79134 0.85946 1.90771 1.56122 1.40871 1.52338 1.21649 0.97076 1.10019 0.96472 1.23508 0.99913 0.88053 0.86534 1.68296 1.15452 1.14883 1.25185 1.23499 0.85396 0.88162 0.96250 1.20626 1.02247 1.03603 0.88074 1.68140 1.38460 1.17296 0.99049 1.21853 0.90733 0.85188 0.92773 1.20503 0.95214 0.97218 0.95098 1.21670 0.97869 0.97206 1.02203 1.21789 1.00227 0.95002 1.02756 1.23180 0.98978 0.98107 0.97692 1.21960 0.86571 0.98912 0.93903 1.44768 1.01840 1.64569 1.21268 1.18589 0.81935 1.42889 0.92717 0.88560 1.25052 0.96043 0.99579 0.96868 1.69814 1.25222 1.42308 1.17752 0.87004 0.80362 0.79715 0.81861 1.21276 1.23125 1.19990 0.88829 0.93836 0.95081 0.93857 0.92521 0.76448 0.80778 0.89316 0.89318 0.89388 0.87073 0.92231 0.91629 0.92361 0.92989 0.91743 0.91506 0.90943 0.91195 0.91963 0.95424 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.69 37.16 0.32 -2.44 16 2 C -0.13 -2.16 5.49 -26.73 -0.15 -2.31 16 3 C 0.16 2.80 3.02 -66.96 -0.20 2.60 16 4 H 0.05 0.79 7.71 -51.93 -0.40 0.39 16 5 C 0.13 2.05 2.86 -65.96 -0.19 1.86 16 6 H 0.10 1.68 7.26 -51.93 -0.38 1.31 16 7 N -0.71 -8.76 5.13 -52.85 -0.27 -9.03 16 8 C 0.57 7.46 6.96 -12.33 -0.09 7.37 16 9 O -0.52 -8.29 14.27 5.33 0.08 -8.21 16 10 C -0.24 -2.85 5.79 -104.69 -0.61 -3.45 16 11 C 0.19 1.92 10.66 -16.78 -0.18 1.74 16 12 N -0.52 -5.69 10.31 -10.39 -0.11 -5.80 16 13 C 0.33 3.44 7.64 -157.07 -1.20 2.24 16 14 C -0.09 -0.57 10.31 36.01 0.37 -0.20 16 15 N -0.52 -5.78 9.81 -6.67 -0.07 -5.84 16 16 C 0.24 2.84 5.54 -81.82 -0.45 2.39 16 17 C -0.06 -0.67 2.75 -91.78 -0.25 -0.93 16 18 C -0.13 -1.32 9.17 37.15 0.34 -0.98 16 19 C -0.14 -1.31 9.03 37.16 0.34 -0.97 16 20 C -0.14 -2.30 6.78 -24.45 -0.17 -2.46 16 21 C 0.11 2.31 4.72 -2.53 -0.01 2.30 16 22 N -0.60 -13.19 2.90 -162.57 -0.47 -13.66 16 23 C -0.23 -6.08 7.81 -15.06 -0.12 -6.20 16 24 H 0.10 2.64 7.11 -52.48 -0.37 2.27 16 25 C 0.02 0.65 5.44 -17.43 -0.09 0.56 16 26 N -0.91 -26.90 13.97 55.49 0.78 -26.12 16 27 Si 0.88 21.91 24.30 -169.99 -4.13 17.78 16 28 H -0.29 -6.91 6.64 56.52 0.38 -6.54 16 29 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 30 H -0.27 -6.74 6.62 56.52 0.37 -6.37 16 31 H 0.09 2.05 5.57 -51.93 -0.29 1.76 16 32 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 4.11 7.84 -40.82 -0.32 3.79 16 37 H 0.18 1.33 7.90 -52.48 -0.41 0.91 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.11 1.41 5.34 -51.93 -0.28 1.14 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 48 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.06 1.37 6.92 -51.93 -0.36 1.01 16 51 H 0.03 0.61 5.44 -51.93 -0.28 0.32 16 52 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 405.01 15.07 6.10 6.10 Total: -1.00 -31.10 405.01 -9.04 -40.14 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -8.61 Total: 3.53 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.33 Total: 1.11 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.14 Total: -60.45 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.08 Total: -8.21 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.13 Total: 17.78 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.10 -9.04 -40.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087747895.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.978 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds