Wall clock time and date at job start Wed Apr 1 2020 04:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 C 1.52998 * 109.47219 * 120.00687 * 2 1 3 5 5 N 1.46494 * 109.46877 * 175.32098 * 4 2 1 6 6 N 1.28443 * 125.19273 * 277.64187 * 5 4 2 7 7 C 1.30866 * 110.92574 * 179.71518 * 6 5 4 8 8 C 1.39672 * 107.86281 * 0.42139 * 7 6 5 9 9 C 1.36603 * 125.18932 * 97.62496 * 5 4 2 10 10 C 1.47163 * 126.88516 * 0.02562 * 9 5 4 11 11 O 1.21623 * 119.99838 * 350.95780 * 10 9 5 12 12 N 1.34782 * 119.99974 * 170.95385 * 10 9 5 13 13 C 1.47216 * 126.69963 * 0.53941 * 12 10 9 14 14 C 1.53782 * 106.37344 * 211.26900 * 13 12 10 15 15 H 1.09007 * 111.85693 * 104.04144 * 14 13 12 16 16 C 1.53778 * 109.34895 * 228.51549 * 14 13 12 17 17 N 1.47216 * 106.37583 * 93.95347 * 16 14 13 18 18 C 1.36932 * 126.70800 * 211.25441 * 17 16 14 19 19 H 1.07997 * 120.00192 * 180.02562 * 18 17 16 20 20 C 1.38813 * 119.99766 * 0.03171 * 18 17 16 21 21 N 1.31624 * 119.99962 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00296 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47228 * 59.99623 * 22 20 18 24 24 H 1.48501 * 109.47512 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46719 * 299.99511 * 22 20 18 26 26 C 1.47217 * 106.59217 * 31.27814 * 17 16 14 27 27 C 1.53778 * 106.37746 * 328.72557 * 26 17 16 28 28 C 1.53005 * 111.86208 * 140.61196 * 27 26 17 29 29 C 1.47213 * 126.69759 * 180.22683 * 12 10 9 30 30 H 1.08998 * 109.46847 * 295.03665 * 1 2 3 31 31 H 1.09004 * 109.47544 * 55.03388 * 1 2 3 32 32 H 1.09003 * 109.47499 * 175.03794 * 1 2 3 33 33 H 1.09005 * 109.46678 * 240.00694 * 2 1 3 34 34 H 1.09008 * 109.46759 * 63.91093 * 3 2 1 35 35 H 1.09000 * 109.47321 * 183.90975 * 3 2 1 36 36 H 1.09000 * 109.47436 * 303.91674 * 3 2 1 37 37 H 1.08998 * 109.47302 * 55.32079 * 4 2 1 38 38 H 1.09000 * 109.46548 * 295.31752 * 4 2 1 39 39 H 1.08005 * 126.06521 * 180.27583 * 7 6 5 40 40 H 1.08001 * 127.31655 * 179.86303 * 8 7 6 41 41 H 1.09000 * 110.07209 * 330.49732 * 13 12 10 42 42 H 1.09003 * 110.07224 * 92.04655 * 13 12 10 43 43 H 1.08996 * 110.07847 * 213.18559 * 16 14 13 44 44 H 1.09003 * 110.06885 * 334.67639 * 16 14 13 45 45 H 0.96996 * 120.00024 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.07486 * 87.95262 * 26 17 16 47 47 H 1.09000 * 110.07991 * 209.48948 * 26 17 16 48 48 H 1.09007 * 109.46553 * 302.06061 * 28 27 26 49 49 H 1.08998 * 109.47198 * 62.05168 * 28 27 26 50 50 H 1.08989 * 109.47314 * 182.06122 * 28 27 26 51 51 H 1.09004 * 110.07367 * 267.95175 * 29 12 10 52 52 H 1.08994 * 110.07877 * 29.50104 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5006 -0.8197 1.1940 6 7 4.1585 -1.7149 0.5494 7 6 5.4477 -1.5366 0.6863 8 6 5.6415 -0.4228 1.5065 9 6 4.3708 0.0270 1.8202 10 6 4.0261 1.1852 2.6600 11 8 2.8739 1.5696 2.7227 12 7 4.9873 1.8200 3.3599 13 6 6.4217 1.4895 3.3841 14 6 6.9311 1.8720 4.7837 15 1 7.0777 0.9960 5.4157 16 6 8.2185 2.7020 4.6481 17 7 7.8052 4.1149 4.6645 18 6 8.4178 5.1545 4.0173 19 1 8.0201 6.1547 4.1049 20 6 9.5501 4.9227 3.2484 21 7 10.0350 3.7037 3.1419 22 14 10.3864 6.3409 2.3660 23 1 10.8288 7.3509 3.3607 24 1 11.5652 5.8332 1.6191 25 1 9.4304 6.9662 1.4172 26 6 6.6046 4.1918 5.5131 27 6 5.8725 2.8493 5.3513 28 6 5.2895 2.3548 6.6767 29 6 4.8087 2.9833 4.2443 30 1 -0.3633 0.4349 0.9311 31 1 -0.3634 0.5890 -0.8422 32 1 -0.3634 -1.0238 -0.0889 33 1 1.8933 -0.5138 -0.8901 34 1 1.7350 1.9356 0.9230 35 1 3.1278 1.4433 -0.0701 36 1 1.6205 1.9762 -0.8528 37 1 1.6099 -1.7220 1.2919 38 1 1.7468 -0.1614 2.1371 39 1 6.2240 -2.1445 0.2454 40 1 6.5830 0.0003 1.8245 41 1 6.5625 0.4222 3.2134 42 1 6.9508 2.0637 2.6235 43 1 8.8855 2.4976 5.4856 44 1 8.7170 2.4681 3.7073 45 1 10.8264 3.5418 2.6049 46 1 6.8914 4.3384 6.5545 47 1 5.9643 5.0095 5.1823 48 1 6.0892 2.2552 7.4106 49 1 4.5515 3.0707 7.0385 50 1 4.8127 1.3866 6.5252 51 1 4.9617 3.9059 3.6844 52 1 3.8103 2.9713 4.6812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091711732.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:39 Heat of formation + Delta-G solvation = 80.714269 kcal Electronic energy + Delta-G solvation = -32439.042974 eV Core-core repulsion = 28441.414889 eV Total energy + Delta-G solvation = -3997.628085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.55860 -40.12834 -38.23623 -36.62627 -34.99333 -33.09529 -32.00749 -31.17018 -30.53547 -30.03523 -27.27310 -26.81372 -26.49550 -25.83135 -25.23358 -23.27056 -21.89908 -21.59341 -20.55886 -20.11146 -19.35492 -18.68677 -17.03852 -16.75623 -16.36404 -16.16128 -15.49911 -15.34307 -15.09972 -14.68807 -14.50329 -13.98634 -13.80356 -13.72732 -13.58513 -13.38885 -13.17954 -12.93718 -12.80212 -12.45204 -12.30374 -12.17193 -11.87026 -11.76772 -11.72776 -11.37579 -11.31144 -11.13442 -10.96233 -10.94071 -10.87355 -10.78797 -10.69682 -10.22531 -10.16121 -9.87992 -9.83334 -9.77347 -9.59287 -9.14427 -8.94052 -8.76243 -8.39493 -6.94879 -5.71686 -3.16088 1.34518 2.35986 2.66619 3.23842 3.31409 3.36746 3.41795 3.42129 4.41166 4.42800 4.47703 4.58777 4.83351 4.83801 4.91777 4.99223 5.14879 5.19518 5.23768 5.32975 5.42234 5.45252 5.51520 5.53495 5.61482 5.65152 5.68707 5.75046 5.75936 5.77857 5.85932 5.89781 5.90194 5.99771 6.09040 6.11967 6.21445 6.28023 6.31685 6.33235 6.40199 6.46197 6.55471 6.68805 6.72997 6.76815 6.84533 7.32744 7.53961 7.69788 7.74575 8.06354 8.24880 8.31110 9.13972 9.74407 10.41284 11.29776 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.003260 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.886566 B = 8586.168057 C = 9103.268499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.151 4.151 4 C 0.119 3.881 5 N -0.255 5.255 6 N -0.282 5.282 7 C -0.006 4.006 8 C -0.199 4.199 9 C -0.027 4.027 10 C 0.603 3.397 11 O -0.550 6.550 12 N -0.592 5.592 13 C 0.094 3.906 14 C -0.116 4.116 15 H 0.079 0.921 16 C 0.140 3.860 17 N -0.594 5.594 18 C -0.219 4.219 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.285 1.285 26 C 0.144 3.856 27 C -0.088 4.088 28 C -0.124 4.124 29 C 0.129 3.871 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.185 0.815 40 H 0.176 0.824 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.010 0.990 44 H 0.128 0.872 45 H 0.254 0.746 46 H 0.022 0.978 47 H 0.044 0.956 48 H 0.059 0.941 49 H 0.054 0.946 50 H 0.050 0.950 51 H 0.075 0.925 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.419 -9.793 -1.308 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.208 4.208 4 C -0.001 4.001 5 N -0.043 5.043 6 N -0.115 5.115 7 C -0.182 4.182 8 C -0.228 4.228 9 C -0.155 4.155 10 C 0.391 3.609 11 O -0.430 6.430 12 N -0.323 5.323 13 C -0.028 4.028 14 C -0.136 4.136 15 H 0.097 0.903 16 C 0.015 3.985 17 N -0.318 5.318 18 C -0.347 4.347 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.212 1.212 26 C 0.017 3.983 27 C -0.090 4.090 28 C -0.181 4.181 29 C 0.007 3.993 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.202 0.798 40 H 0.193 0.807 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.028 0.972 44 H 0.146 0.854 45 H 0.065 0.935 46 H 0.040 0.960 47 H 0.062 0.938 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.094 0.906 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.830 -10.231 -1.979 18.125 hybrid contribution 1.259 1.148 -0.092 1.706 sum -13.572 -9.083 -2.071 16.462 Atomic orbital electron populations 1.21752 0.93724 1.01892 1.02666 1.21409 0.96486 0.97451 0.97012 1.21956 1.00854 0.94950 1.03015 1.22339 0.73076 1.02836 1.01808 1.45690 1.07352 1.18247 1.32985 1.73145 1.07318 1.14183 1.16829 1.23592 0.92429 0.99765 1.02428 1.22966 0.97389 0.99236 1.03179 1.21316 0.90614 0.98367 1.05227 1.16428 0.84187 0.81238 0.79081 1.90703 1.18832 1.67531 1.65982 1.48216 1.08574 1.31140 1.44385 1.22902 0.79318 1.01158 0.99386 1.23064 0.98299 0.98200 0.94066 0.90259 1.21998 0.90279 0.82319 1.03952 1.44480 1.28143 1.04495 1.54669 1.19033 1.06474 0.87482 1.21725 0.90427 1.24739 0.98169 0.96912 1.00664 1.69552 1.24839 1.18184 1.44456 0.86144 0.78841 0.81096 0.79383 1.21241 1.21517 1.21184 1.21405 0.89276 0.93133 0.94535 1.22222 0.94788 0.97940 0.94075 1.21640 1.00427 1.00260 0.95798 1.22198 0.98938 0.87857 0.90309 0.92004 0.91929 0.92503 0.90733 0.90170 0.93374 0.92998 0.88993 0.86399 0.79793 0.80704 0.89856 0.89423 0.97207 0.85447 0.93518 0.96002 0.93768 0.92177 0.92739 0.93123 0.90633 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.19 37.16 0.34 -0.85 16 2 C -0.10 -1.13 3.13 -90.62 -0.28 -1.42 16 3 C -0.15 -1.94 7.94 37.16 0.29 -1.64 16 4 C 0.12 1.40 5.41 -4.05 -0.02 1.38 16 5 N -0.26 -3.59 3.04 -57.14 -0.17 -3.77 16 6 N -0.28 -3.99 11.90 30.59 0.36 -3.62 16 7 C -0.01 -0.08 12.03 -17.43 -0.21 -0.29 16 8 C -0.20 -2.76 9.31 -38.99 -0.36 -3.13 16 9 C -0.03 -0.41 5.83 -82.06 -0.48 -0.89 16 10 C 0.60 9.86 7.67 -12.64 -0.10 9.77 16 11 O -0.55 -9.49 12.15 5.26 0.06 -9.42 16 12 N -0.59 -9.66 3.32 -172.74 -0.57 -10.23 16 13 C 0.09 1.53 5.10 -3.24 -0.02 1.51 16 14 C -0.12 -1.97 3.66 -88.83 -0.32 -2.29 16 15 H 0.08 1.23 7.92 -51.93 -0.41 0.81 16 16 C 0.14 3.06 5.56 -3.25 -0.02 3.04 16 17 N -0.59 -13.96 3.39 -171.13 -0.58 -14.54 16 18 C -0.22 -5.72 10.34 -15.06 -0.16 -5.87 16 19 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -24.93 10.08 55.49 0.56 -24.37 16 22 Si 0.91 21.21 29.55 -169.99 -5.02 16.18 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.14 2.76 6.19 -3.25 -0.02 2.74 16 27 C -0.09 -1.42 1.10 -152.55 -0.17 -1.59 16 28 C -0.12 -1.66 8.53 37.16 0.32 -1.34 16 29 C 0.13 2.11 6.15 -3.07 -0.02 2.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.14 6.19 -51.92 -0.32 0.82 16 35 H 0.05 0.72 7.05 -51.93 -0.37 0.36 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.12 1.49 6.10 -51.93 -0.32 1.17 16 39 H 0.19 1.76 8.06 -52.48 -0.42 1.33 16 40 H 0.18 2.28 5.03 -52.49 -0.26 2.01 16 41 H 0.08 1.18 4.83 -51.93 -0.25 0.93 16 42 H 0.09 1.65 7.40 -51.93 -0.38 1.26 16 43 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.13 3.10 4.81 -51.93 -0.25 2.85 16 45 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 46 H 0.02 0.42 7.87 -51.93 -0.41 0.01 16 47 H 0.04 0.83 7.51 -51.93 -0.39 0.44 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.05 0.65 8.14 -51.94 -0.42 0.23 16 51 H 0.08 1.36 7.41 -51.93 -0.38 0.98 16 52 H 0.07 1.13 7.65 -51.93 -0.40 0.74 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -29.09 392.74 -9.10 -38.19 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -8.34 Total: 4.81 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.32 Total: 0.86 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.40 Total: -56.54 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.06 Total: -9.42 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.09 -9.10 -38.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091711732.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.903 kcal (2) G-P(sol) polarization free energy of solvation -29.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds