Wall clock time and date at job start Wed Apr 1 2020 04:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 C 1.52998 * 109.47219 * 120.00687 * 2 1 3 5 5 N 1.46494 * 109.46877 * 175.32098 * 4 2 1 6 6 N 1.28443 * 125.19273 * 277.64187 * 5 4 2 7 7 C 1.30866 * 110.92574 * 179.71518 * 6 5 4 8 8 C 1.39672 * 107.86281 * 0.42139 * 7 6 5 9 9 C 1.36603 * 125.18932 * 97.62496 * 5 4 2 10 10 C 1.47163 * 126.88516 * 0.02562 * 9 5 4 11 11 O 1.21623 * 119.99838 * 350.95780 * 10 9 5 12 12 N 1.34782 * 119.99974 * 170.95385 * 10 9 5 13 13 C 1.47216 * 126.69963 * 0.53941 * 12 10 9 14 14 C 1.53782 * 106.37344 * 211.26900 * 13 12 10 15 15 H 1.09007 * 111.85693 * 104.04144 * 14 13 12 16 16 C 1.53778 * 109.34895 * 228.51549 * 14 13 12 17 17 N 1.47216 * 106.37583 * 93.95347 * 16 14 13 18 18 C 1.36932 * 126.70800 * 211.25441 * 17 16 14 19 19 H 1.07997 * 120.00192 * 180.02562 * 18 17 16 20 20 C 1.38813 * 119.99766 * 0.03171 * 18 17 16 21 21 N 1.31624 * 119.99962 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00296 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47228 * 59.99623 * 22 20 18 24 24 H 1.48501 * 109.47512 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46719 * 299.99511 * 22 20 18 26 26 C 1.47217 * 106.59217 * 31.27814 * 17 16 14 27 27 C 1.53778 * 106.37746 * 328.72557 * 26 17 16 28 28 C 1.53005 * 111.86208 * 140.61196 * 27 26 17 29 29 C 1.47213 * 126.69759 * 180.22683 * 12 10 9 30 30 H 1.08998 * 109.46847 * 295.03665 * 1 2 3 31 31 H 1.09004 * 109.47544 * 55.03388 * 1 2 3 32 32 H 1.09003 * 109.47499 * 175.03794 * 1 2 3 33 33 H 1.09005 * 109.46678 * 240.00694 * 2 1 3 34 34 H 1.09008 * 109.46759 * 63.91093 * 3 2 1 35 35 H 1.09000 * 109.47321 * 183.90975 * 3 2 1 36 36 H 1.09000 * 109.47436 * 303.91674 * 3 2 1 37 37 H 1.08998 * 109.47302 * 55.32079 * 4 2 1 38 38 H 1.09000 * 109.46548 * 295.31752 * 4 2 1 39 39 H 1.08005 * 126.06521 * 180.27583 * 7 6 5 40 40 H 1.08001 * 127.31655 * 179.86303 * 8 7 6 41 41 H 1.09000 * 110.07209 * 330.49732 * 13 12 10 42 42 H 1.09003 * 110.07224 * 92.04655 * 13 12 10 43 43 H 1.08996 * 110.07847 * 213.18559 * 16 14 13 44 44 H 1.09003 * 110.06885 * 334.67639 * 16 14 13 45 45 H 0.96996 * 120.00024 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.07486 * 87.95262 * 26 17 16 47 47 H 1.09000 * 110.07991 * 209.48948 * 26 17 16 48 48 H 1.09007 * 109.46553 * 302.06061 * 28 27 26 49 49 H 1.08998 * 109.47198 * 62.05168 * 28 27 26 50 50 H 1.08989 * 109.47314 * 182.06122 * 28 27 26 51 51 H 1.09004 * 110.07367 * 267.95175 * 29 12 10 52 52 H 1.08994 * 110.07877 * 29.50104 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5006 -0.8197 1.1940 6 7 4.1585 -1.7149 0.5494 7 6 5.4477 -1.5366 0.6863 8 6 5.6415 -0.4228 1.5065 9 6 4.3708 0.0270 1.8202 10 6 4.0261 1.1852 2.6600 11 8 2.8739 1.5696 2.7227 12 7 4.9873 1.8200 3.3599 13 6 6.4217 1.4895 3.3841 14 6 6.9311 1.8720 4.7837 15 1 7.0777 0.9960 5.4157 16 6 8.2185 2.7020 4.6481 17 7 7.8052 4.1149 4.6645 18 6 8.4178 5.1545 4.0173 19 1 8.0201 6.1547 4.1049 20 6 9.5501 4.9227 3.2484 21 7 10.0350 3.7037 3.1419 22 14 10.3864 6.3409 2.3660 23 1 10.8288 7.3509 3.3607 24 1 11.5652 5.8332 1.6191 25 1 9.4304 6.9662 1.4172 26 6 6.6046 4.1918 5.5131 27 6 5.8725 2.8493 5.3513 28 6 5.2895 2.3548 6.6767 29 6 4.8087 2.9833 4.2443 30 1 -0.3633 0.4349 0.9311 31 1 -0.3634 0.5890 -0.8422 32 1 -0.3634 -1.0238 -0.0889 33 1 1.8933 -0.5138 -0.8901 34 1 1.7350 1.9356 0.9230 35 1 3.1278 1.4433 -0.0701 36 1 1.6205 1.9762 -0.8528 37 1 1.6099 -1.7220 1.2919 38 1 1.7468 -0.1614 2.1371 39 1 6.2240 -2.1445 0.2454 40 1 6.5830 0.0003 1.8245 41 1 6.5625 0.4222 3.2134 42 1 6.9508 2.0637 2.6235 43 1 8.8855 2.4976 5.4856 44 1 8.7170 2.4681 3.7073 45 1 10.8264 3.5418 2.6049 46 1 6.8914 4.3384 6.5545 47 1 5.9643 5.0095 5.1823 48 1 6.0892 2.2552 7.4106 49 1 4.5515 3.0707 7.0385 50 1 4.8127 1.3866 6.5252 51 1 4.9617 3.9059 3.6844 52 1 3.8103 2.9713 4.6812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091711732.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:38 Heat of formation + Delta-G solvation = 65.351686 kcal Electronic energy + Delta-G solvation = -32439.709145 eV Core-core repulsion = 28441.414889 eV Total energy + Delta-G solvation = -3998.294256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.62862 -41.50652 -39.60098 -37.57753 -36.53333 -34.66426 -33.05632 -32.66839 -31.78850 -31.62244 -28.18697 -27.92648 -27.77585 -27.31648 -26.75371 -24.71016 -23.19089 -22.70540 -21.83148 -21.45451 -20.53050 -20.03624 -18.70575 -18.14285 -17.61103 -17.30901 -16.79309 -16.56150 -16.50613 -16.10456 -15.81514 -15.44648 -15.11551 -14.84909 -14.79867 -14.66899 -14.36117 -14.27095 -13.83180 -13.81142 -13.41911 -13.29246 -13.21851 -13.12684 -12.92837 -12.84772 -12.70023 -12.45213 -12.36800 -12.29599 -12.02890 -11.97150 -11.90052 -11.83514 -11.76208 -11.49180 -11.24858 -11.24026 -11.05661 -10.70087 -10.24826 -10.00134 -9.72643 -8.85487 -7.71006 -5.16894 0.18434 1.28609 1.50031 1.50898 1.57075 1.62268 2.04058 2.08717 2.52163 3.21355 3.35564 3.47464 3.57802 3.67600 3.70899 3.76676 3.90714 3.97270 3.98164 4.15470 4.21474 4.28308 4.35859 4.39535 4.46497 4.55533 4.62320 4.65379 4.71549 4.72387 4.78056 4.82505 4.83461 4.85776 4.91471 4.95801 5.02334 5.02961 5.06770 5.18079 5.25980 5.28548 5.29833 5.34313 5.44262 5.52421 5.54666 5.60576 5.74905 5.88380 6.39079 6.42833 6.89263 7.07310 7.16435 7.82136 8.48940 9.27467 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.003260 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.886566 B = 8586.168057 C = 9103.268499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 C -0.144 4.144 4 C 0.114 3.886 5 N -0.256 5.256 6 N -0.291 5.291 7 C -0.004 4.004 8 C -0.202 4.202 9 C -0.047 4.047 10 C 0.602 3.398 11 O -0.561 6.561 12 N -0.594 5.594 13 C 0.105 3.895 14 C -0.106 4.106 15 H 0.104 0.896 16 C 0.145 3.855 17 N -0.615 5.615 18 C -0.232 4.232 19 H 0.077 0.923 20 C -0.059 4.059 21 N -0.940 5.940 22 Si 0.971 3.029 23 H -0.282 1.282 24 H -0.293 1.293 25 H -0.283 1.283 26 C 0.140 3.860 27 C -0.076 4.076 28 C -0.116 4.116 29 C 0.133 3.867 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.019 0.981 36 H 0.062 0.938 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.216 0.784 40 H 0.180 0.820 41 H 0.108 0.892 42 H 0.056 0.944 43 H -0.012 1.012 44 H 0.102 0.898 45 H 0.248 0.752 46 H 0.027 0.973 47 H 0.044 0.956 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.062 0.938 51 H 0.052 0.948 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.963 -11.151 -1.205 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 C -0.201 4.201 4 C -0.005 4.005 5 N -0.044 5.044 6 N -0.123 5.123 7 C -0.179 4.179 8 C -0.231 4.231 9 C -0.175 4.175 10 C 0.391 3.609 11 O -0.442 6.442 12 N -0.325 5.325 13 C -0.017 4.017 14 C -0.126 4.126 15 H 0.122 0.878 16 C 0.019 3.981 17 N -0.339 5.339 18 C -0.361 4.361 19 H 0.095 0.905 20 C -0.252 4.252 21 N -0.590 5.590 22 Si 0.801 3.199 23 H -0.208 1.208 24 H -0.219 1.219 25 H -0.209 1.209 26 C 0.014 3.986 27 C -0.078 4.078 28 C -0.174 4.174 29 C 0.010 3.990 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.233 0.767 40 H 0.197 0.803 41 H 0.126 0.874 42 H 0.075 0.925 43 H 0.006 0.994 44 H 0.119 0.881 45 H 0.058 0.942 46 H 0.045 0.955 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.070 0.930 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.409 -11.590 -1.858 20.175 hybrid contribution 1.722 1.605 -0.141 2.358 sum -14.687 -9.985 -1.998 17.872 Atomic orbital electron populations 1.21725 0.91499 1.03256 1.02988 1.21373 0.98216 0.95660 0.96435 1.21876 0.98998 0.96631 1.02621 1.22518 0.72176 1.04056 1.01741 1.45908 1.08009 1.17871 1.32601 1.73150 1.07928 1.14304 1.16959 1.24122 0.92683 0.99450 1.01636 1.23094 0.97117 0.99544 1.03306 1.21264 0.91536 0.98611 1.06085 1.16618 0.83944 0.81464 0.78887 1.90696 1.19243 1.67975 1.66263 1.48191 1.08496 1.31155 1.44637 1.22700 0.79028 1.02043 0.97915 1.22948 0.96056 0.98432 0.95166 0.87751 1.21790 0.92197 0.82534 1.01577 1.44711 1.29367 1.04678 1.55175 1.19327 1.06708 0.88344 1.21725 0.90502 1.25428 0.99044 0.98946 1.01756 1.69788 1.24840 1.19401 1.44973 0.85255 0.77650 0.78740 0.78283 1.20844 1.21882 1.20919 1.21569 0.88119 0.95060 0.93886 1.22149 0.94112 0.95887 0.95671 1.21601 1.00886 1.01135 0.93767 1.22106 0.99624 0.87115 0.90132 0.92015 0.91231 0.90692 0.91047 0.91733 0.96159 0.91892 0.86817 0.87334 0.76703 0.80341 0.87434 0.92547 0.99406 0.88059 0.94184 0.95476 0.93803 0.91678 0.91165 0.91945 0.92969 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.19 71.98 0.66 -1.33 16 2 C -0.10 -1.99 3.13 -10.80 -0.03 -2.02 16 3 C -0.14 -3.67 7.94 71.98 0.57 -3.10 16 4 C 0.11 2.53 5.41 86.38 0.47 2.99 16 5 N -0.26 -6.90 3.04 -334.70 -1.02 -7.91 16 6 N -0.29 -7.70 11.90 -57.14 -0.68 -8.38 16 7 C 0.00 -0.09 12.03 85.18 1.02 0.94 16 8 C -0.20 -5.37 9.31 22.66 0.21 -5.16 16 9 C -0.05 -1.38 5.83 40.78 0.24 -1.14 16 10 C 0.60 19.43 7.67 86.59 0.66 20.09 16 11 O -0.56 -19.14 12.15 -4.10 -0.05 -19.19 16 12 N -0.59 -19.10 3.32 -818.66 -2.72 -21.82 16 13 C 0.11 3.38 5.10 86.51 0.44 3.82 16 14 C -0.11 -3.52 3.66 -9.64 -0.04 -3.56 16 15 H 0.10 3.00 7.92 -2.38 -0.02 2.98 16 16 C 0.14 6.46 5.56 86.50 0.48 6.94 16 17 N -0.62 -29.52 3.39 -695.33 -2.36 -31.88 16 18 C -0.23 -12.40 10.34 84.03 0.87 -11.53 16 19 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 20 C -0.06 -3.17 5.49 84.86 0.47 -2.71 16 21 N -0.94 -52.38 10.08 21.65 0.22 -52.16 16 22 Si 0.97 44.34 29.55 68.60 2.03 46.36 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 C 0.14 5.34 6.19 86.50 0.54 5.88 16 27 C -0.08 -2.37 1.10 -50.91 -0.06 -2.43 16 28 C -0.12 -2.80 8.53 71.98 0.61 -2.19 16 29 C 0.13 4.26 6.15 86.62 0.53 4.80 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.06 1.84 6.19 -2.38 -0.01 1.83 16 35 H 0.02 0.60 7.05 -2.39 -0.02 0.58 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.11 2.63 6.10 -2.39 -0.01 2.61 16 39 H 0.22 3.50 8.06 -2.91 -0.02 3.47 16 40 H 0.18 4.51 5.03 -2.91 -0.01 4.49 16 41 H 0.11 2.93 4.83 -2.39 -0.01 2.92 16 42 H 0.06 2.19 7.40 -2.39 -0.02 2.18 16 43 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 44 H 0.10 5.12 4.81 -2.39 -0.01 5.11 16 45 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 46 H 0.03 1.02 7.87 -2.38 -0.02 1.01 16 47 H 0.04 1.66 7.51 -2.39 -0.02 1.64 16 48 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 49 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 51 H 0.05 1.92 7.41 -2.38 -0.02 1.90 16 52 H 0.09 2.54 7.65 -2.39 -0.02 2.53 16 Total: -1.00 -64.00 392.74 3.99 -60.01 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.92 Total: 24.68 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 7.65 Total: 10.28 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -6.55 Total: -122.15 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.05 Total: -19.19 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -64.00 3.99 -60.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091711732.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.361 kcal (2) G-P(sol) polarization free energy of solvation -64.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds