Wall clock time and date at job start Wed Apr 1 2020 04:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47133 * 2 1 4 4 C 1.52999 * 109.47163 * 119.99555 * 2 1 3 5 5 N 1.46501 * 109.47435 * 174.99815 * 4 2 1 6 6 C 1.34257 * 125.75170 * 125.30623 * 5 4 2 7 7 C 1.38043 * 107.41474 * 180.11446 * 6 5 4 8 8 C 1.47428 * 126.41445 * 179.87909 * 7 6 5 9 9 O 1.21598 * 120.00058 * 352.41868 * 8 7 6 10 10 N 1.34774 * 119.99983 * 172.43072 * 8 7 6 11 11 C 1.47199 * 126.70571 * 354.24150 * 10 8 7 12 12 C 1.55042 * 106.47836 * 211.68242 * 11 10 8 13 13 H 1.08999 * 112.74897 * 103.27329 * 12 11 10 14 14 C 1.54880 * 108.94788 * 229.45456 * 12 11 10 15 15 N 1.48334 * 104.11470 * 136.88978 * 14 12 11 16 16 C 1.36932 * 128.20111 * 138.15879 * 15 14 12 17 17 H 1.08003 * 120.00084 * 200.34020 * 16 15 14 18 18 C 1.38815 * 119.99815 * 20.33814 * 16 15 14 19 19 N 1.31619 * 120.00105 * 21.17703 * 18 16 15 20 20 Si 1.86802 * 119.99910 * 201.45688 * 18 16 15 21 21 H 1.48500 * 109.47054 * 179.72327 * 20 18 16 22 22 H 1.48501 * 109.46769 * 299.72131 * 20 18 16 23 23 H 1.48500 * 109.47444 * 59.72057 * 20 18 16 24 24 C 1.48340 * 103.60335 * 317.89384 * 15 14 12 25 25 C 1.54456 * 104.31874 * 42.07018 * 24 15 14 26 26 C 1.53001 * 112.30045 * 96.98685 * 25 24 15 27 27 C 1.47201 * 126.70242 * 174.29583 * 10 8 7 28 28 C 1.41294 * 107.17244 * 359.60871 * 7 6 5 29 29 N 1.30446 * 108.01875 * 0.24149 * 28 7 6 30 30 H 1.08999 * 109.46965 * 300.00489 * 1 2 3 31 31 H 1.08998 * 109.47133 * 60.00143 * 1 2 3 32 32 H 1.08993 * 109.47444 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47111 * 240.00042 * 2 1 3 34 34 H 1.08998 * 109.46994 * 299.99942 * 3 2 1 35 35 H 1.08995 * 109.46949 * 59.99595 * 3 2 1 36 36 H 1.09003 * 109.46835 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.46752 * 55.00051 * 4 2 1 38 38 H 1.09002 * 109.47342 * 295.00476 * 4 2 1 39 39 H 1.07997 * 126.29147 * 359.96829 * 6 5 4 40 40 H 1.08990 * 110.06343 * 330.65602 * 11 10 8 41 41 H 1.09004 * 110.05641 * 92.11356 * 11 10 8 42 42 H 1.08996 * 110.59182 * 18.23171 * 14 12 11 43 43 H 1.08998 * 110.52945 * 255.51563 * 14 12 11 44 44 H 0.96999 * 119.99604 * 6.18256 * 19 18 16 45 45 H 1.09000 * 110.46309 * 160.77614 * 24 15 14 46 46 H 1.09002 * 110.46603 * 283.36067 * 24 15 14 47 47 H 1.09005 * 109.46601 * 61.01369 * 26 25 24 48 48 H 1.08998 * 109.47284 * 181.00809 * 26 25 24 49 49 H 1.09000 * 109.46729 * 301.01445 * 26 25 24 50 50 H 1.08997 * 110.06545 * 29.34784 * 27 10 8 51 51 H 1.09004 * 110.06267 * 267.82829 * 27 10 8 52 52 H 1.07990 * 125.99109 * 180.24125 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.3556 -0.4014 2.1340 7 6 5.6322 -0.6850 1.6919 8 6 6.8899 -0.3926 2.4033 9 8 6.8721 0.2714 3.4219 10 7 8.0595 -0.8610 1.9247 11 6 8.2414 -1.7700 0.7813 12 6 9.4993 -2.6214 1.0921 13 1 9.2541 -3.6322 1.4179 14 6 10.4403 -2.5958 -0.1378 15 7 11.7917 -2.4092 0.4446 16 6 12.9605 -3.0265 0.0869 17 1 13.7895 -3.0555 0.7786 18 6 13.0799 -3.6148 -1.1647 19 7 12.2823 -3.2454 -2.1444 20 14 14.3674 -4.9365 -1.4565 21 1 14.2860 -5.4048 -2.8634 22 1 15.7185 -4.3768 -1.1985 23 1 14.1213 -6.0784 -0.5397 24 6 11.5785 -1.3908 1.5018 25 6 10.2580 -1.8159 2.1809 26 6 10.4958 -2.6336 3.4521 27 6 9.4046 -0.5644 2.4440 28 6 5.5076 -1.3137 0.4327 29 7 4.2377 -1.3924 0.1449 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6053 -1.7197 1.2952 38 1 1.7516 -0.1582 2.1370 39 1 4.0934 0.0767 3.0662 40 1 7.3721 -2.4193 0.6779 41 1 8.3896 -1.1955 -0.1331 42 1 10.1901 -1.7627 -0.7946 43 1 10.3861 -3.5396 -0.6803 44 1 11.6727 -2.5014 -2.0190 45 1 12.3989 -1.4088 2.2193 46 1 11.4782 -0.3990 1.0610 47 1 11.0504 -2.0322 4.1724 48 1 9.5372 -2.9234 3.8823 49 1 11.0693 -3.5275 3.2070 50 1 9.3563 -0.3628 3.5140 51 1 9.8270 0.2931 1.9200 52 1 6.3210 -1.6670 -0.1835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092140037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:44 Heat of formation + Delta-G solvation = 72.218781 kcal Electronic energy + Delta-G solvation = -31091.366675 eV Core-core repulsion = 27093.370198 eV Total energy + Delta-G solvation = -3997.996477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.62589 -40.06487 -38.15390 -36.83804 -35.16423 -33.09991 -32.27501 -30.93977 -30.42126 -29.71750 -27.67838 -27.44375 -26.20919 -25.64446 -25.07866 -23.14190 -21.81390 -21.65840 -20.53554 -20.28986 -19.32391 -18.58609 -17.52208 -17.17935 -16.45870 -15.98765 -15.64967 -15.34574 -14.97615 -14.79461 -14.51683 -14.09981 -14.03535 -13.81584 -13.58780 -13.38925 -13.31403 -12.99899 -12.90611 -12.73948 -12.70641 -12.47171 -12.26564 -11.88155 -11.74580 -11.61720 -11.51325 -11.43508 -11.23562 -11.03981 -10.80508 -10.70204 -10.50708 -10.20251 -10.11517 -10.09249 -9.96224 -9.73229 -9.70774 -9.37340 -8.87256 -8.55245 -8.40392 -7.00218 -6.11280 -3.20075 1.40353 2.08083 2.11368 3.17651 3.48684 3.49794 3.52015 3.69907 3.97728 4.27613 4.42579 4.51495 4.55708 4.60977 4.72974 4.77104 4.81437 4.96384 5.05356 5.11182 5.15059 5.17423 5.27105 5.36210 5.37374 5.41710 5.42859 5.45951 5.52630 5.59466 5.60284 5.66686 5.77949 5.82613 5.90161 5.94735 5.96612 6.09899 6.19985 6.23672 6.30196 6.41933 6.48738 6.61113 6.61933 6.65081 6.79891 6.92177 6.99323 7.38112 7.70893 7.75141 8.35558 8.42380 8.96086 9.76896 10.40049 11.24053 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.002363 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.035928 B =11845.659738 C =12944.710758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.134 3.866 5 N -0.359 5.359 6 C 0.124 3.876 7 C -0.286 4.286 8 C 0.611 3.389 9 O -0.559 6.559 10 N -0.609 5.609 11 C 0.095 3.905 12 C -0.109 4.109 13 H 0.087 0.913 14 C 0.143 3.857 15 N -0.598 5.598 16 C -0.323 4.323 17 H 0.065 0.935 18 C -0.028 4.028 19 N -0.924 5.924 20 Si 1.070 2.930 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.136 3.864 25 C -0.086 4.086 26 C -0.120 4.120 27 C 0.119 3.881 28 C 0.071 3.929 29 N -0.294 5.294 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.185 0.815 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.069 0.931 44 H 0.268 0.732 45 H 0.051 0.949 46 H 0.026 0.974 47 H 0.051 0.949 48 H 0.047 0.953 49 H 0.064 0.936 50 H 0.076 0.924 51 H 0.069 0.931 52 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.152 5.795 7.291 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.206 4.206 4 C 0.013 3.987 5 N -0.137 5.137 6 C -0.028 4.028 7 C -0.301 4.301 8 C 0.401 3.599 9 O -0.439 6.439 10 N -0.340 5.340 11 C -0.028 4.028 12 C -0.130 4.130 13 H 0.106 0.894 14 C 0.016 3.984 15 N -0.322 5.322 16 C -0.451 4.451 17 H 0.083 0.917 18 C -0.229 4.229 19 N -0.565 5.565 20 Si 0.900 3.100 21 H -0.210 1.210 22 H -0.220 1.220 23 H -0.221 1.221 24 C 0.010 3.990 25 C -0.089 4.089 26 C -0.177 4.177 27 C -0.003 4.003 28 C -0.116 4.116 29 N -0.114 5.114 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.202 0.798 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.087 0.913 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -22.525 4.648 5.831 23.727 hybrid contribution 0.056 1.430 1.696 2.219 sum -22.469 6.078 7.527 24.464 Atomic orbital electron populations 1.21787 0.93757 1.02275 1.02520 1.21430 0.96271 0.96996 0.98158 1.21841 1.01529 0.95152 1.02065 1.21980 0.74011 1.02475 1.00261 1.48565 1.06847 1.44248 1.14075 1.22897 0.88985 0.96126 0.94742 1.20191 0.93342 1.17039 0.99479 1.16825 0.81337 0.78646 0.83057 1.90741 1.86711 1.41568 1.24926 1.48282 1.05630 1.47652 1.32468 1.22861 0.98886 0.91933 0.89089 1.23447 0.93578 0.97954 0.98001 0.89430 1.21906 0.84538 0.99964 0.91993 1.45152 1.03514 1.43842 1.39662 1.19761 0.91613 1.34038 0.99656 0.91720 1.25841 1.03098 1.03395 0.90608 1.70779 1.25554 1.28526 1.31680 0.83442 0.74709 0.75967 0.75924 1.21032 1.22024 1.22063 1.21879 0.93380 0.92002 0.91758 1.22350 0.96753 0.94042 0.95725 1.21585 1.00753 1.00015 0.95368 1.22172 0.80857 0.97291 0.99995 1.24771 0.94708 0.96660 0.95469 1.77187 1.04397 1.19967 1.09809 0.92342 0.91797 0.92208 0.89328 0.92140 0.92587 0.92558 0.89303 0.88378 0.79792 0.90271 0.90731 0.95369 0.91252 0.92066 0.93006 0.95633 0.92962 0.93397 0.91742 0.90530 0.91324 0.78326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.19 37.16 0.34 -0.29 16 2 C -0.11 -0.69 3.00 -90.62 -0.27 -0.96 16 3 C -0.15 -1.03 9.08 37.16 0.34 -0.70 16 4 C 0.13 0.85 5.88 -4.04 -0.02 0.82 16 5 N -0.36 -3.58 3.10 -60.81 -0.19 -3.77 16 6 C 0.12 1.35 11.26 -16.56 -0.19 1.16 16 7 C -0.29 -3.80 6.05 -105.07 -0.64 -4.43 16 8 C 0.61 9.68 7.86 -12.52 -0.10 9.58 16 9 O -0.56 -10.31 17.11 5.28 0.09 -10.22 16 10 N -0.61 -9.35 3.32 -172.10 -0.57 -9.92 16 11 C 0.10 1.37 4.93 -2.58 -0.01 1.36 16 12 C -0.11 -1.86 3.83 -87.36 -0.33 -2.20 16 13 H 0.09 1.49 7.93 -51.93 -0.41 1.08 16 14 C 0.14 3.07 4.65 -2.04 -0.01 3.06 16 15 N -0.60 -14.52 3.24 -168.20 -0.54 -15.06 16 16 C -0.32 -8.85 10.25 -15.06 -0.15 -9.00 16 17 H 0.07 1.77 7.92 -52.48 -0.42 1.35 16 18 C -0.03 -0.79 5.19 -17.43 -0.09 -0.88 16 19 N -0.92 -27.25 12.70 55.49 0.70 -26.55 16 20 Si 1.07 24.94 29.97 -169.99 -5.09 19.85 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.14 2.74 6.37 -2.26 -0.01 2.72 16 25 C -0.09 -1.45 1.07 -152.17 -0.16 -1.61 16 26 C -0.12 -1.87 8.57 37.16 0.32 -1.55 16 27 C 0.12 1.88 6.24 -3.27 -0.02 1.86 16 28 C 0.07 0.89 10.28 -16.98 -0.17 0.71 16 29 N -0.29 -3.62 12.24 30.86 0.38 -3.24 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.73 8.04 -51.93 -0.42 0.31 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.52 7.75 -51.93 -0.40 0.12 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.39 8.06 -51.93 -0.42 -0.02 16 39 H 0.19 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.08 1.00 5.33 -51.93 -0.28 0.72 16 41 H 0.07 1.06 7.04 -51.93 -0.37 0.69 16 42 H 0.03 0.62 6.83 -51.93 -0.35 0.26 16 43 H 0.07 1.67 7.20 -51.93 -0.37 1.30 16 44 H 0.27 7.84 6.18 -40.82 -0.25 7.59 16 45 H 0.05 1.03 7.92 -51.93 -0.41 0.62 16 46 H 0.03 0.52 7.18 -51.93 -0.37 0.15 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 50 H 0.08 1.21 7.56 -51.93 -0.39 0.82 16 51 H 0.07 1.08 7.11 -51.93 -0.37 0.71 16 52 H 0.20 2.25 5.03 -52.49 -0.26 1.99 16 LS Contribution 405.12 15.07 6.11 6.11 Total: -1.00 -33.51 405.12 -8.83 -42.34 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.52 Total: 0.82 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -1.19 Total: -0.35 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.22 Total: -58.53 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.09 Total: 19.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.51 -8.83 -42.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092140037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.559 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds