Wall clock time and date at job start Wed Apr 1 2020 04:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46793 * 2 1 4 4 C 1.52995 * 109.46919 * 185.51120 * 3 2 1 5 5 C 1.53004 * 109.47162 * 65.37549 * 4 3 2 6 6 N 1.46505 * 109.47209 * 65.51396 * 3 2 1 7 7 C 1.35029 * 124.88525 * 84.99715 * 6 3 2 8 8 C 1.35366 * 107.22710 * 180.02562 * 7 6 3 9 9 C 1.41506 * 105.50291 * 359.97438 * 8 7 6 10 10 C 1.47710 * 126.51773 * 180.02562 * 9 8 7 11 11 O 1.21572 * 119.99833 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00051 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00015 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.55823 * 34.04012 * 13 12 10 15 15 C 1.54845 * 110.62594 * 156.94394 * 13 12 10 16 16 C 1.55843 * 103.44891 * 118.49131 * 15 13 12 17 17 H 1.08997 * 115.56265 * 158.81222 * 16 15 13 18 18 C 1.55847 * 105.06244 * 288.17842 * 16 15 13 19 19 C 1.54845 * 103.44765 * 71.82067 * 18 16 15 20 20 C 1.55841 * 110.62697 * 270.96989 * 13 12 10 21 21 H 1.09007 * 115.56330 * 82.69561 * 20 13 12 22 22 N 1.50235 * 101.05256 * 208.57291 * 20 13 12 23 23 C 1.36941 * 130.84172 * 233.96769 * 22 20 13 24 24 H 1.08005 * 119.99841 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00322 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99773 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00274 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.46899 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47388 * 120.00214 * 27 25 23 30 30 H 1.48499 * 109.47054 * 240.00332 * 27 25 23 31 31 N 1.28473 * 124.87913 * 264.70175 * 6 3 2 32 32 H 1.09001 * 109.47318 * 63.99960 * 1 2 3 33 33 H 1.09000 * 109.46810 * 183.99760 * 1 2 3 34 34 H 1.09001 * 109.47493 * 303.99305 * 1 2 3 35 35 H 1.08992 * 109.47450 * 240.00125 * 2 1 3 36 36 H 1.09001 * 109.47274 * 119.99509 * 2 1 3 37 37 H 1.09001 * 109.47245 * 305.51022 * 3 2 1 38 38 H 1.09002 * 109.47437 * 185.37588 * 4 3 2 39 39 H 1.09005 * 109.47431 * 305.37704 * 4 3 2 40 40 H 1.08998 * 109.46814 * 173.58826 * 5 4 3 41 41 H 1.08997 * 109.47218 * 293.59087 * 5 4 3 42 42 H 1.09000 * 109.47036 * 53.59258 * 5 4 3 43 43 H 1.08002 * 126.38760 * 0.02562 * 7 6 3 44 44 H 1.08003 * 127.24971 * 179.97438 * 8 7 6 45 45 H 0.96993 * 119.99608 * 0.02562 * 12 10 9 46 46 H 1.09004 * 110.62432 * 236.98132 * 15 13 12 47 47 H 1.08999 * 110.62865 * 359.83760 * 15 13 12 48 48 H 1.09000 * 110.62623 * 190.31430 * 18 16 15 49 49 H 1.09007 * 110.62158 * 313.32782 * 18 16 15 50 50 H 1.08999 * 110.62959 * 241.51008 * 19 18 16 51 51 H 1.09001 * 110.76256 * 118.55786 * 19 18 16 52 52 H 0.97001 * 120.00070 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5636 1.4448 -0.1385 5 6 3.9520 0.8868 -1.5092 6 7 1.6630 2.0938 1.2570 7 6 2.3681 2.0210 2.4063 8 6 1.7008 2.7482 3.3328 9 6 0.5608 3.2559 2.6658 10 6 -0.4891 4.1154 3.2497 11 8 -0.4200 4.4522 4.4158 12 7 -1.5242 4.5253 2.4900 13 6 -2.5657 5.3773 3.0693 14 1 -2.1394 6.0515 3.8122 15 6 -3.2950 6.1767 1.9618 16 6 -4.7694 5.6837 2.0700 17 1 -5.5205 6.3502 1.6461 18 6 -4.7515 4.2279 1.5141 19 6 -4.0222 3.4284 2.6216 20 6 -3.6987 4.5100 3.6960 21 1 -3.5069 4.1427 4.7042 22 7 -4.8795 5.4268 3.5462 23 6 -5.7791 5.8867 4.4705 24 1 -5.6936 5.5849 5.5040 25 6 -6.8009 6.7409 4.0793 26 7 -6.9054 7.1084 2.8198 27 14 -8.0276 7.3689 5.3403 28 1 -7.6938 6.8117 6.6758 29 1 -7.9681 8.8517 5.3931 30 1 -9.3966 6.9419 4.9545 31 7 0.6167 2.8207 1.4229 32 1 -0.3634 0.4505 -0.9237 33 1 -0.3633 -1.0252 0.0716 34 1 -0.3634 0.5745 0.8520 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 1.5983 1.9841 -0.8365 38 1 3.9357 2.4649 -0.0429 39 1 4.0006 0.8239 0.6436 40 1 5.0271 0.9934 -1.6536 41 1 3.6810 -0.1676 -1.5623 42 1 3.4245 1.4372 -2.2883 43 1 3.2922 1.4830 2.5581 44 1 1.9798 2.9073 4.3639 45 1 -1.5798 4.2557 1.5600 46 1 -3.2328 7.2474 2.1568 47 1 -2.8799 5.9416 0.9817 48 1 -5.7671 3.8564 1.3778 49 1 -4.1957 4.1814 0.5775 50 1 -3.1047 2.9853 2.2345 51 1 -4.6739 2.6589 3.0355 52 1 -7.6193 7.7056 2.5464 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096102569.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:44 Heat of formation + Delta-G solvation = 82.491889 kcal Electronic energy + Delta-G solvation = -31327.606428 eV Core-core repulsion = 27330.055427 eV Total energy + Delta-G solvation = -3997.551001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.80329 -39.78189 -38.15972 -37.24918 -33.81892 -32.44186 -32.29988 -31.57520 -30.74533 -29.21959 -28.94594 -27.72103 -26.64139 -24.28781 -23.47258 -23.11652 -22.49707 -21.16975 -20.16491 -19.96143 -19.36278 -18.48005 -17.91871 -17.08336 -16.63720 -16.29773 -15.34499 -15.24386 -14.93500 -14.74932 -14.55905 -14.38039 -14.00494 -13.85771 -13.66329 -13.46049 -13.21914 -12.86654 -12.76186 -12.48027 -12.23168 -12.14345 -12.04477 -11.68268 -11.52685 -11.42430 -11.36006 -11.21474 -10.96973 -10.92018 -10.85790 -10.81314 -10.76360 -10.13929 -10.01675 -9.83918 -9.69112 -9.29601 -9.27785 -9.17850 -9.09149 -8.87429 -8.37832 -6.84690 -5.67160 -3.04731 1.66040 2.13362 2.24490 3.43115 3.48789 3.51219 3.58605 3.70598 3.85342 4.16912 4.40531 4.50059 4.53700 4.61725 4.65218 4.76760 4.84485 5.01814 5.14618 5.16999 5.28984 5.33114 5.34800 5.44926 5.46611 5.54863 5.60833 5.61511 5.66813 5.69064 5.75730 5.88875 5.92795 5.96203 6.06169 6.15769 6.22210 6.36822 6.41130 6.43019 6.62504 6.68021 6.70710 6.79049 6.89654 7.05722 7.08726 7.35269 7.59225 7.76166 7.84913 8.06990 8.23188 8.61871 9.16424 9.78739 10.59885 11.42585 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.002375 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.317248 B =11786.064286 C =12321.778808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.135 4.135 3 C 0.147 3.853 4 C -0.134 4.134 5 C -0.150 4.150 6 N -0.276 5.276 7 C -0.023 4.023 8 C -0.180 4.180 9 C -0.012 4.012 10 C 0.597 3.403 11 O -0.538 6.538 12 N -0.698 5.698 13 C 0.127 3.873 14 H 0.084 0.916 15 C -0.141 4.141 16 C 0.155 3.845 17 H 0.154 0.846 18 C -0.136 4.136 19 C -0.130 4.130 20 C 0.128 3.872 21 H 0.086 0.914 22 N -0.590 5.590 23 C -0.206 4.206 24 H 0.080 0.920 25 C -0.015 4.015 26 N -0.924 5.924 27 Si 0.916 3.084 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 N -0.259 5.259 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.176 0.824 44 H 0.160 0.840 45 H 0.401 0.599 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.045 0.955 50 H 0.052 0.948 51 H 0.050 0.950 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.298 -14.627 -10.783 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.047 3.953 4 C -0.173 4.173 5 C -0.208 4.208 6 N -0.064 5.064 7 C -0.166 4.166 8 C -0.208 4.208 9 C -0.172 4.172 10 C 0.380 3.620 11 O -0.413 6.413 12 N -0.348 5.348 13 C 0.021 3.979 14 H 0.103 0.897 15 C -0.181 4.181 16 C 0.048 3.952 17 H 0.171 0.829 18 C -0.175 4.175 19 C -0.170 4.170 20 C 0.019 3.981 21 H 0.104 0.896 22 N -0.311 5.311 23 C -0.334 4.334 24 H 0.098 0.902 25 C -0.209 4.209 26 N -0.573 5.573 27 Si 0.747 3.253 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.219 1.219 31 N -0.094 5.094 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.193 0.807 44 H 0.177 0.823 45 H 0.236 0.764 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.063 0.937 50 H 0.070 0.930 51 H 0.068 0.932 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 21.498 -14.196 -10.936 27.987 hybrid contribution -0.053 0.025 0.944 0.946 sum 21.445 -14.171 -9.992 27.578 Atomic orbital electron populations 1.21802 0.94358 1.02206 1.03063 1.22019 0.97681 0.94107 1.03528 1.21757 0.96122 0.94156 0.83315 1.21902 0.92672 1.03087 0.99608 1.21776 1.02084 1.01413 0.95524 1.45643 1.15895 1.34845 1.10058 1.22693 1.01190 1.06116 0.86555 1.21770 0.95583 1.02309 1.01141 1.22124 0.99309 1.04882 0.90910 1.16926 0.80310 0.79224 0.85508 1.90786 1.77274 1.57130 1.16098 1.46103 1.23132 1.51143 1.14415 1.22680 0.86700 0.92226 0.96279 0.89745 1.23305 0.99642 0.99510 0.95659 1.23756 0.93374 0.93562 0.84512 0.82879 1.23030 0.99009 0.99560 0.95932 1.22894 0.98556 0.97838 0.97675 1.23204 0.87738 0.90973 0.96165 0.89628 1.46496 1.27952 1.51998 1.04617 1.19121 1.03426 1.21531 0.89339 0.90248 1.24698 0.99300 1.00426 0.96525 1.69452 1.34255 1.39141 1.14413 0.85954 0.80835 0.78307 0.80170 1.20554 1.21827 1.21896 1.73521 1.07221 1.08999 1.19677 0.92172 0.92309 0.91870 0.89418 0.91099 0.87298 0.90580 0.90607 0.91684 0.91894 0.92019 0.80678 0.82277 0.76419 0.91605 0.92712 0.92715 0.93652 0.92973 0.93154 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.84 37.16 0.37 -0.87 16 2 C -0.14 -0.77 5.49 -26.73 -0.15 -0.91 16 3 C 0.15 0.95 2.65 -67.93 -0.18 0.77 16 4 C -0.13 -0.57 4.88 -26.73 -0.13 -0.70 16 5 C -0.15 -0.45 9.52 37.16 0.35 -0.09 16 6 N -0.28 -2.70 2.81 -54.83 -0.15 -2.86 16 7 C -0.02 -0.22 10.55 -17.17 -0.18 -0.40 16 8 C -0.18 -2.25 10.81 -39.36 -0.43 -2.67 16 9 C -0.01 -0.18 7.13 -82.76 -0.59 -0.77 16 10 C 0.60 10.61 7.82 -12.39 -0.10 10.52 16 11 O -0.54 -11.31 16.60 5.30 0.09 -11.22 16 12 N -0.70 -11.89 3.69 -52.38 -0.19 -12.09 16 13 C 0.13 2.54 3.13 -65.44 -0.20 2.33 16 14 H 0.08 1.87 7.61 -51.93 -0.40 1.47 16 15 C -0.14 -2.83 6.20 -24.24 -0.15 -2.98 16 16 C 0.15 3.59 4.72 -62.80 -0.30 3.29 16 17 H 0.15 4.04 5.52 -51.93 -0.29 3.75 16 18 C -0.14 -2.74 6.44 -24.24 -0.16 -2.90 16 19 C -0.13 -2.55 6.32 -24.24 -0.15 -2.71 16 20 C 0.13 2.83 5.35 -62.81 -0.34 2.49 16 21 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 22 N -0.59 -15.12 2.99 -145.82 -0.44 -15.55 16 23 C -0.21 -5.80 10.59 -15.06 -0.16 -5.96 16 24 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 25 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 26 N -0.92 -26.63 10.47 55.49 0.58 -26.05 16 27 Si 0.92 22.42 29.55 -169.99 -5.02 17.40 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 31 N -0.26 -3.35 10.82 33.42 0.36 -2.99 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.68 6.95 -51.93 -0.36 0.31 16 35 H 0.09 0.33 6.48 -51.93 -0.34 -0.01 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.26 7.34 -51.93 -0.38 -0.13 16 40 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.06 0.15 6.77 -51.93 -0.35 -0.20 16 42 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.18 0.98 7.31 -52.49 -0.38 0.59 16 44 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 45 H 0.40 6.16 7.67 -40.82 -0.31 5.85 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.05 0.94 7.38 -51.93 -0.38 0.56 16 48 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.04 0.79 7.82 -51.93 -0.41 0.38 16 50 H 0.05 0.92 6.41 -51.93 -0.33 0.59 16 51 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 52 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 406.20 15.07 6.12 6.12 Total: -1.00 -32.62 406.20 -9.79 -42.41 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -8.55 Total: 6.88 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.58 Total: -2.06 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.16 Total: -59.53 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.62 -9.79 -42.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096102569.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.897 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds