Wall clock time and date at job start Wed Apr 1 2020 04:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.47124 * 2 1 4 4 C 1.52995 * 109.46783 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46775 * 180.02562 * 4 3 2 6 6 C 1.34258 * 125.75308 * 125.00041 * 5 4 3 7 7 C 1.38045 * 107.41580 * 180.02562 * 6 5 4 8 8 C 1.47432 * 126.41188 * 179.97438 * 7 6 5 9 9 O 1.21608 * 119.99560 * 180.02562 * 8 7 6 10 10 N 1.34768 * 120.00232 * 0.03416 * 8 7 6 11 11 C 1.46497 * 120.00242 * 179.97438 * 10 8 7 12 12 H 1.09010 * 110.55643 * 37.03398 * 11 10 8 13 13 C 1.54219 * 110.64714 * 159.95054 * 11 10 8 14 14 C 1.55838 * 103.56556 * 118.56746 * 13 11 10 15 15 H 1.09005 * 116.12923 * 159.06548 * 14 13 11 16 16 C 1.55846 * 105.06662 * 288.08847 * 14 13 11 17 17 C 1.54854 * 103.44156 * 71.82173 * 16 14 13 18 18 C 1.55844 * 110.62990 * 274.13279 * 11 10 8 19 19 H 1.09005 * 116.12451 * 82.35626 * 18 11 10 20 20 N 1.50237 * 101.05327 * 208.56709 * 18 11 10 21 21 C 1.36932 * 130.84494 * 234.00252 * 20 18 11 22 22 H 1.08000 * 119.99597 * 9.86600 * 21 20 18 23 23 C 1.38810 * 120.00478 * 189.86278 * 21 20 18 24 24 N 1.31617 * 119.99876 * 9.13414 * 23 21 20 25 25 Si 1.86795 * 119.99899 * 189.13181 * 23 21 20 26 26 H 1.48499 * 109.47170 * 265.01934 * 25 23 21 27 27 H 1.48506 * 109.46875 * 145.02117 * 25 23 21 28 28 H 1.48498 * 109.47325 * 25.02141 * 25 23 21 29 29 C 1.41288 * 107.16935 * 0.23281 * 7 6 5 30 30 C 1.50700 * 125.98618 * 179.73459 * 29 7 6 31 31 N 1.30451 * 108.02331 * 359.60805 * 29 7 6 32 32 H 1.08998 * 109.47285 * 59.99385 * 1 2 3 33 33 H 1.08995 * 109.46992 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46665 * 299.99651 * 1 2 3 35 35 H 1.09000 * 109.46665 * 240.00349 * 2 1 3 36 36 H 1.08998 * 109.47285 * 120.00615 * 2 1 3 37 37 H 1.09003 * 109.46640 * 60.00305 * 3 2 1 38 38 H 1.09002 * 109.46829 * 300.00527 * 3 2 1 39 39 H 1.09003 * 109.47493 * 60.00570 * 4 3 2 40 40 H 1.08998 * 109.47757 * 300.00252 * 4 3 2 41 41 H 1.08004 * 126.29232 * 0.02562 * 6 5 4 42 42 H 0.97004 * 120.00172 * 359.97438 * 10 8 7 43 43 H 1.09004 * 110.64214 * 359.97438 * 13 11 10 44 44 H 1.09007 * 110.49738 * 237.06482 * 13 11 10 45 45 H 1.08993 * 110.63214 * 190.31744 * 16 14 13 46 46 H 1.09004 * 110.62078 * 313.18150 * 16 14 13 47 47 H 1.09001 * 110.62310 * 118.49679 * 17 16 14 48 48 H 1.09002 * 110.62961 * 241.51197 * 17 16 14 49 49 H 0.96998 * 120.00114 * 179.97438 * 24 23 21 50 50 H 1.09006 * 109.47146 * 89.99829 * 30 29 7 51 51 H 1.09002 * 109.47110 * 209.99651 * 30 29 7 52 52 H 1.08998 * 109.47541 * 329.99596 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.9094 3.3545 0.8924 7 6 5.1107 4.6733 0.5377 8 6 5.9719 5.6455 1.2354 9 8 6.0638 6.7846 0.8195 10 7 6.6575 5.2719 2.3339 11 6 7.5137 6.2378 3.0268 12 1 7.0591 7.2286 3.0166 13 6 7.7883 5.7810 4.4739 14 6 9.3361 5.6040 4.5138 15 1 9.7969 5.6296 5.5014 16 6 9.6192 4.3228 3.6729 17 6 9.3463 4.7793 2.2185 18 6 8.9313 6.2774 2.3808 19 1 9.0355 6.8963 1.4894 20 7 9.7735 6.6780 3.5586 21 6 10.6618 7.7083 3.7154 22 1 10.7275 8.4833 2.9661 23 6 11.4778 7.7566 4.8373 24 7 11.5298 6.7289 5.6579 25 14 12.5019 9.2802 5.1823 26 1 13.8687 9.0928 4.6328 27 1 12.5838 9.4999 6.6487 28 1 11.8674 10.4591 4.5398 29 6 4.3323 4.9185 -0.6156 30 6 4.2337 6.2276 -1.3555 31 7 3.7159 3.8124 -0.9291 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 1.6767 1.9563 0.8901 38 1 1.6766 1.9564 -0.8900 39 1 3.9330 0.9289 -0.8909 40 1 3.9338 0.9285 0.8890 41 1 5.3547 2.8435 1.7334 42 1 6.5840 4.3634 2.6658 43 1 7.2878 4.8348 4.6798 44 1 7.4709 6.5461 5.1825 45 1 10.6565 4.0089 3.7886 46 1 8.9416 3.5183 3.9589 47 1 10.2483 4.6917 1.6129 48 1 8.5316 4.2020 1.7813 49 1 12.1003 6.7625 6.4417 50 1 5.0023 6.2675 -2.1274 51 1 3.2500 6.3106 -1.8177 52 1 4.3775 7.0517 -0.6568 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096306146.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:47 Heat of formation + Delta-G solvation = 71.385414 kcal Electronic energy + Delta-G solvation = -30787.420487 eV Core-core repulsion = 26789.387873 eV Total energy + Delta-G solvation = -3998.032614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.53677 -39.74504 -38.01517 -36.42502 -33.97258 -33.46958 -32.32738 -30.87495 -29.96603 -29.21143 -28.95044 -27.78411 -27.12665 -24.47247 -23.96486 -22.44863 -21.71197 -21.37400 -20.43879 -19.67858 -19.40145 -18.49245 -17.63542 -16.82797 -16.32147 -16.12963 -15.51053 -15.18442 -14.96401 -14.67299 -14.44998 -14.20814 -14.02979 -13.85680 -13.54885 -13.48932 -13.19060 -12.83333 -12.67561 -12.34187 -12.22657 -12.00357 -11.91843 -11.76686 -11.71685 -11.58245 -11.47243 -11.17680 -10.97455 -10.91879 -10.87245 -10.82077 -10.78224 -10.16428 -10.04709 -9.88341 -9.55254 -9.45338 -9.36887 -9.19576 -8.83066 -8.76142 -8.36602 -6.85190 -5.73890 -3.08070 1.42899 2.13004 2.18022 3.41004 3.47087 3.49349 3.61416 3.70627 3.98822 4.29112 4.41585 4.48399 4.50062 4.57864 4.71429 4.83571 4.97222 5.09572 5.23755 5.25582 5.26549 5.33474 5.38925 5.40728 5.41402 5.62348 5.64500 5.68293 5.72580 5.80635 5.84009 5.87310 5.91634 6.00845 6.02147 6.10999 6.15182 6.32782 6.37485 6.50642 6.58305 6.63006 6.64879 6.74587 6.87004 7.02291 7.06510 7.32043 7.48976 7.57483 7.75585 7.96686 8.14684 8.66254 9.10707 9.74727 10.57876 11.38848 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.002215 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.896836 B =12637.991405 C =13484.697779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.130 3.870 5 N -0.360 5.360 6 C 0.095 3.905 7 C -0.280 4.280 8 C 0.588 3.412 9 O -0.543 6.543 10 N -0.711 5.711 11 C 0.133 3.867 12 H 0.083 0.917 13 C -0.144 4.144 14 C 0.160 3.840 15 H 0.141 0.859 16 C -0.131 4.131 17 C -0.130 4.130 18 C 0.128 3.872 19 H 0.086 0.914 20 N -0.589 5.589 21 C -0.211 4.211 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.130 3.870 30 C -0.076 4.076 31 N -0.303 5.303 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.180 0.820 42 H 0.390 0.610 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.049 0.951 48 H 0.049 0.951 49 H 0.253 0.747 50 H 0.079 0.921 51 H 0.067 0.933 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.306 -15.132 -8.949 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.170 4.170 4 C 0.010 3.990 5 N -0.138 5.138 6 C -0.056 4.056 7 C -0.295 4.295 8 C 0.375 3.625 9 O -0.421 6.421 10 N -0.361 5.361 11 C 0.028 3.972 12 H 0.101 0.899 13 C -0.183 4.183 14 C 0.053 3.947 15 H 0.158 0.842 16 C -0.171 4.171 17 C -0.170 4.170 18 C 0.020 3.980 19 H 0.104 0.896 20 N -0.310 5.310 21 C -0.339 4.339 22 H 0.096 0.904 23 C -0.207 4.207 24 N -0.567 5.567 25 Si 0.743 3.257 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.206 1.206 29 C -0.037 4.037 30 C -0.135 4.135 31 N -0.125 5.125 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.197 0.803 42 H 0.224 0.776 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.097 0.903 51 H 0.086 0.914 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.831 -14.836 -9.887 26.667 hybrid contribution 1.153 0.349 0.978 1.551 sum -18.679 -14.487 -8.909 25.261 Atomic orbital electron populations 1.21748 0.95267 1.01838 1.02131 1.21467 0.96564 0.95598 1.02382 1.21909 0.93141 0.97937 1.04050 1.21881 0.95936 0.77061 1.04165 1.48414 1.34464 1.10343 1.20592 1.23089 0.93337 0.94003 0.95168 1.20401 1.11168 0.94421 1.03522 1.17223 0.78712 0.86605 0.79941 1.90736 1.65391 1.19983 1.65986 1.46057 1.46766 1.14666 1.28658 1.22434 0.90925 0.91714 0.92173 0.89923 1.23195 1.01073 0.99568 0.94509 1.23391 0.88290 0.85882 0.97126 0.84223 1.22983 1.00197 0.98165 0.95724 1.22966 0.99214 0.97835 0.96974 1.23291 0.89664 0.93430 0.91664 0.89584 1.46455 1.45601 1.30823 1.08109 1.19032 1.11132 0.98500 1.05216 0.90438 1.24740 0.99363 0.97947 0.98670 1.69665 1.42317 1.28841 1.15863 0.86081 0.79975 0.82383 0.77253 1.21759 1.21680 1.20607 1.22471 0.92747 0.94945 0.93520 1.20335 1.02204 0.90908 1.00060 1.77123 1.25035 0.96666 1.13637 0.92538 0.92485 0.92618 0.91573 0.91654 0.91250 0.90206 0.89418 0.88364 0.80274 0.77621 0.92666 0.91733 0.92420 0.93989 0.93165 0.93241 0.93712 0.90285 0.91378 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.12 -0.53 5.93 -26.72 -0.16 -0.69 16 3 C -0.13 -0.79 5.39 -26.73 -0.14 -0.94 16 4 C 0.13 0.80 6.49 -4.04 -0.03 0.77 16 5 N -0.36 -3.60 3.65 -60.81 -0.22 -3.82 16 6 C 0.10 0.96 10.94 -16.56 -0.18 0.78 16 7 C -0.28 -3.77 6.13 -105.07 -0.64 -4.41 16 8 C 0.59 9.40 7.81 -12.52 -0.10 9.30 16 9 O -0.54 -10.53 14.65 5.27 0.08 -10.45 16 10 N -0.71 -10.49 3.63 -52.79 -0.19 -10.68 16 11 C 0.13 2.46 3.05 -65.78 -0.20 2.25 16 12 H 0.08 1.70 7.70 -51.92 -0.40 1.30 16 13 C -0.14 -2.62 6.17 -24.58 -0.15 -2.77 16 14 C 0.16 3.55 4.63 -62.80 -0.29 3.26 16 15 H 0.14 3.54 5.89 -51.93 -0.31 3.24 16 16 C -0.13 -2.54 6.44 -24.23 -0.16 -2.69 16 17 C -0.13 -2.44 6.35 -23.98 -0.15 -2.60 16 18 C 0.13 2.71 5.37 -62.55 -0.34 2.38 16 19 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 20 N -0.59 -14.67 2.97 -145.55 -0.43 -15.10 16 21 C -0.21 -5.83 10.55 -15.06 -0.16 -5.99 16 22 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 23 C -0.01 -0.32 5.46 -17.43 -0.10 -0.41 16 24 N -0.92 -26.14 10.75 55.49 0.60 -25.54 16 25 Si 0.91 22.07 29.56 -169.99 -5.03 17.05 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C 0.13 1.78 7.26 -82.02 -0.60 1.18 16 30 C -0.08 -0.93 9.92 36.01 0.36 -0.58 16 31 N -0.30 -3.86 12.33 33.90 0.42 -3.45 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.35 8.06 -51.93 -0.42 -0.07 16 41 H 0.18 1.13 7.46 -52.48 -0.39 0.74 16 42 H 0.39 4.59 6.94 -40.82 -0.28 4.30 16 43 H 0.05 0.83 7.33 -51.93 -0.38 0.45 16 44 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.05 0.79 6.50 -51.93 -0.34 0.46 16 49 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 51 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.10 1.32 6.56 -51.93 -0.34 0.98 16 LS Contribution 411.10 15.07 6.20 6.20 Total: -1.00 -32.99 411.10 -9.98 -42.97 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.73 Total: 4.35 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.66 Total: -1.52 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.17 Total: -58.60 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.99 -9.98 -42.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096306146.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.352 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds