Wall clock time and date at job start Wed Apr 1 2020 05:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47513 * 2 1 4 4 C 1.52999 * 109.47284 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46726 * 180.02562 * 4 3 2 6 6 N 1.39932 * 125.75579 * 269.96988 * 5 4 3 7 7 C 1.30448 * 108.90143 * 179.77971 * 6 5 4 8 8 C 1.41294 * 108.01791 * 0.38284 * 7 6 5 9 9 C 1.47427 * 126.41259 * 179.87934 * 8 7 6 10 10 O 1.21596 * 120.00131 * 179.69048 * 9 8 7 11 11 N 1.34781 * 119.99906 * 359.69370 * 9 8 7 12 12 C 1.46505 * 119.99960 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.55621 * 37.52714 * 12 11 9 14 14 C 1.54846 * 110.62560 * 160.60582 * 12 11 9 15 15 C 1.56303 * 103.40534 * 118.36416 * 14 12 11 16 16 H 1.09000 * 115.71767 * 158.92829 * 15 14 12 17 17 C 1.55848 * 105.08071 * 288.42374 * 15 14 12 18 18 C 1.54222 * 103.56406 * 71.68587 * 17 15 14 19 19 C 1.55842 * 110.62271 * 274.63430 * 12 11 9 20 20 H 1.08997 * 115.56274 * 82.69785 * 19 12 11 21 21 N 1.50237 * 100.83889 * 33.11833 * 15 14 12 22 22 C 1.36937 * 130.83816 * 126.10539 * 21 15 14 23 23 H 1.08000 * 120.00393 * 189.93225 * 22 21 15 24 24 C 1.38820 * 119.99655 * 9.93273 * 22 21 15 25 25 N 1.31624 * 119.99567 * 200.95816 * 24 22 21 26 26 Si 1.86795 * 120.00041 * 20.96185 * 24 22 21 27 27 H 1.48496 * 109.47094 * 269.99840 * 26 24 22 28 28 H 1.48503 * 109.47227 * 150.00027 * 26 24 22 29 29 H 1.48499 * 109.47209 * 30.00050 * 26 24 22 30 30 C 1.34263 * 125.75502 * 90.00523 * 5 4 3 31 31 C 1.50699 * 126.29140 * 359.97438 * 30 5 4 32 32 H 1.08998 * 109.47631 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47289 * 299.99819 * 1 2 3 34 34 H 1.08996 * 109.47378 * 59.99771 * 1 2 3 35 35 H 1.09002 * 109.46774 * 239.99612 * 2 1 3 36 36 H 1.09005 * 109.47163 * 120.00386 * 2 1 3 37 37 H 1.09002 * 109.46695 * 59.99818 * 3 2 1 38 38 H 1.09005 * 109.47221 * 300.00351 * 3 2 1 39 39 H 1.08995 * 109.46944 * 60.00248 * 4 3 2 40 40 H 1.08996 * 109.47003 * 299.99593 * 4 3 2 41 41 H 1.07991 * 125.99100 * 180.26952 * 7 6 5 42 42 H 0.96995 * 120.00305 * 359.97438 * 11 9 8 43 43 H 1.09006 * 110.62791 * 236.97654 * 14 12 11 44 44 H 1.09002 * 110.63267 * 359.97438 * 14 12 11 45 45 H 1.08996 * 110.62661 * 190.08927 * 17 15 14 46 46 H 1.09000 * 110.62745 * 312.95436 * 17 15 14 47 47 H 1.08998 * 110.64996 * 241.43955 * 18 17 15 48 48 H 1.09000 * 110.49397 * 118.49303 * 18 17 15 49 49 H 0.96992 * 120.00283 * 354.93691 * 25 24 22 50 50 H 1.09002 * 109.47321 * 270.00797 * 31 30 5 51 51 H 1.09012 * 109.46921 * 30.00427 * 31 30 5 52 52 H 1.08998 * 109.47233 * 150.00342 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 7 4.0583 2.8236 0.0000 6 7 4.3309 3.5950 -1.1352 7 6 4.7425 4.7735 -0.7565 8 6 4.7574 4.7980 0.6561 9 6 5.1586 5.9328 1.5075 10 8 5.1210 5.8276 2.7183 11 7 5.5669 7.0870 0.9437 12 6 5.9661 8.2145 1.7897 13 1 6.5006 7.8609 2.6714 14 6 6.8315 9.2179 0.9885 15 6 5.9882 10.5335 1.0249 16 1 6.5408 11.4548 0.8411 17 6 4.7737 10.2627 0.0864 18 6 3.9151 9.2615 0.8857 19 6 4.7224 9.0577 2.2031 20 1 4.1604 8.6794 3.0569 21 7 5.3402 10.4164 2.3753 22 6 5.3153 11.2836 3.4348 23 1 4.9290 10.9588 4.3896 24 6 5.7866 12.5803 3.2815 25 7 6.1522 13.2766 4.3369 26 14 5.9018 13.3369 1.5775 27 1 7.2376 13.0477 0.9969 28 1 5.7119 14.8065 1.6745 29 1 4.8476 12.7580 0.7065 30 6 4.3203 3.5626 1.0899 31 6 4.1657 3.1239 2.5233 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8932 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.6766 1.9562 0.8900 38 1 1.6767 1.9563 -0.8900 39 1 3.9329 0.9287 -0.8908 40 1 3.9337 0.9284 0.8891 41 1 5.0244 5.5870 -1.4084 42 1 5.5971 7.1708 -0.0222 43 1 7.7969 9.3646 1.4728 44 1 6.9641 8.8766 -0.0382 45 1 4.2173 11.1819 -0.0963 46 1 5.1057 9.8228 -0.8540 47 1 3.8189 8.3201 0.3449 48 1 2.9337 9.6853 1.0985 49 1 6.0240 12.9123 5.2266 50 1 3.1596 3.3609 2.8693 51 1 4.3304 2.0486 2.5940 52 1 4.8953 3.6447 3.1434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096306912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:02 Heat of formation + Delta-G solvation = 78.517089 kcal Electronic energy + Delta-G solvation = -31022.677513 eV Core-core repulsion = 27024.954151 eV Total energy + Delta-G solvation = -3997.723361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.66743 -40.00839 -38.21697 -36.46590 -34.10690 -33.26858 -32.41263 -32.07789 -29.74923 -29.38106 -29.00024 -28.18451 -27.15815 -24.64386 -23.63141 -22.62509 -21.82449 -21.54064 -20.44179 -20.09685 -19.60033 -18.68100 -17.71304 -17.23500 -16.31638 -15.98655 -15.89052 -15.51028 -15.47400 -14.86572 -14.70941 -14.28508 -13.87785 -13.78707 -13.55694 -13.39319 -13.27845 -13.12614 -13.10025 -12.89544 -12.38725 -12.35992 -11.95827 -11.91773 -11.89365 -11.73149 -11.63498 -11.42600 -11.26722 -11.19414 -11.08281 -10.98156 -10.68482 -10.26592 -9.95095 -9.63511 -9.59574 -9.54081 -9.39338 -9.12739 -8.87035 -8.69942 -8.36569 -7.15396 -6.25568 -3.12514 1.39518 2.05294 2.08742 3.37229 3.49678 3.53286 3.61948 3.69187 4.08215 4.19156 4.35737 4.44148 4.52023 4.62399 4.69830 4.76814 4.80706 4.87171 4.97156 5.08652 5.18675 5.23146 5.24043 5.28465 5.34906 5.36050 5.40522 5.49881 5.57722 5.63223 5.66348 5.71222 5.75534 5.77461 5.83374 5.90488 5.92256 6.03005 6.04422 6.24313 6.31402 6.37065 6.46930 6.55088 6.65006 6.71610 6.78817 6.95987 7.01627 7.36834 7.48877 7.86146 8.33437 8.57350 9.05334 9.58609 10.38263 11.23638 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023346 B = 0.002249 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.082299 B =12448.678311 C =12613.126538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.138 4.138 4 C 0.128 3.872 5 N -0.362 5.362 6 N -0.300 5.300 7 C 0.082 3.918 8 C -0.292 4.292 9 C 0.591 3.409 10 O -0.548 6.548 11 N -0.711 5.711 12 C 0.134 3.866 13 H 0.087 0.913 14 C -0.134 4.134 15 C 0.118 3.882 16 H 0.095 0.905 17 C -0.138 4.138 18 C -0.130 4.130 19 C 0.135 3.865 20 H 0.091 0.909 21 N -0.603 5.603 22 C -0.307 4.307 23 H 0.078 0.922 24 C -0.026 4.026 25 N -0.929 5.929 26 Si 1.061 2.939 27 H -0.295 1.295 28 H -0.302 1.302 29 H -0.276 1.276 30 C 0.156 3.844 31 C -0.099 4.099 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.188 0.812 42 H 0.393 0.607 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.261 0.739 50 H 0.086 0.914 51 H 0.067 0.933 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.320 -26.787 -12.605 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.176 4.176 4 C 0.007 3.993 5 N -0.142 5.142 6 N -0.119 5.119 7 C -0.105 4.105 8 C -0.307 4.307 9 C 0.379 3.621 10 O -0.427 6.427 11 N -0.361 5.361 12 C 0.028 3.972 13 H 0.105 0.895 14 C -0.174 4.174 15 C 0.012 3.988 16 H 0.113 0.887 17 C -0.177 4.177 18 C -0.170 4.170 19 C 0.026 3.974 20 H 0.109 0.891 21 N -0.326 5.326 22 C -0.434 4.434 23 H 0.096 0.904 24 C -0.226 4.226 25 N -0.570 5.570 26 Si 0.895 3.105 27 H -0.225 1.225 28 H -0.230 1.230 29 H -0.202 1.202 30 C 0.024 3.976 31 C -0.157 4.157 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.205 0.795 42 H 0.227 0.773 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.104 0.896 51 H 0.086 0.914 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.174 -26.243 -13.365 30.091 hybrid contribution -0.349 -0.740 0.852 1.181 sum -6.523 -26.983 -12.513 30.450 Atomic orbital electron populations 1.21755 0.95204 1.01909 1.02184 1.21444 0.96574 0.95409 1.02439 1.22043 0.93551 0.98243 1.03783 1.21840 0.95098 0.77622 1.04702 1.48489 1.50080 1.12199 1.03385 1.77148 1.22727 1.04425 1.07570 1.24004 0.97083 0.95507 0.93952 1.20104 1.20578 0.96543 0.93479 1.17162 0.76612 0.81400 0.86946 1.90732 1.55089 1.82780 1.14111 1.45940 1.67408 1.12947 1.09793 1.22478 0.97166 0.84396 0.93111 0.89480 1.23220 0.98888 0.96774 0.98531 1.23291 0.92926 0.95649 0.86965 0.88723 1.23049 0.98136 0.99459 0.97063 1.22800 0.98739 0.97766 0.97706 1.23164 0.92366 0.86829 0.95084 0.89071 1.46845 1.57757 1.15727 1.12256 1.20099 1.42552 0.92388 0.88358 0.90393 1.25777 0.98270 0.92961 1.05547 1.70904 1.44702 1.42750 0.98655 0.83884 0.75978 0.75267 0.75356 1.22495 1.22996 1.20217 1.21514 0.94306 0.90760 0.91040 1.20692 1.05198 1.01265 0.88564 0.92426 0.92523 0.92566 0.91548 0.91563 0.91080 0.90737 0.88408 0.88697 0.79534 0.77257 0.91034 0.91868 0.91636 0.92649 0.92386 0.92632 0.92828 0.89569 0.91425 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.15 0.37 -0.33 16 2 C -0.12 -0.50 5.93 -26.74 -0.16 -0.66 16 3 C -0.14 -0.80 5.54 -26.73 -0.15 -0.95 16 4 C 0.13 0.81 6.22 -4.04 -0.03 0.79 16 5 N -0.36 -3.65 3.58 -56.61 -0.20 -3.86 16 6 N -0.30 -3.49 12.50 30.86 0.39 -3.10 16 7 C 0.08 0.91 11.50 -16.98 -0.20 0.71 16 8 C -0.29 -3.73 6.13 -105.07 -0.64 -4.37 16 9 C 0.59 8.97 7.81 -12.52 -0.10 8.87 16 10 O -0.55 -10.08 14.58 5.28 0.08 -10.01 16 11 N -0.71 -9.98 3.62 -52.47 -0.19 -10.17 16 12 C 0.13 2.37 3.07 -65.44 -0.20 2.17 16 13 H 0.09 1.74 7.72 -51.93 -0.40 1.34 16 14 C -0.13 -2.29 6.22 -23.98 -0.15 -2.44 16 15 C 0.12 2.43 3.61 -62.54 -0.23 2.21 16 16 H 0.10 2.08 3.44 -51.93 -0.18 1.90 16 17 C -0.14 -2.42 6.20 -24.57 -0.15 -2.58 16 18 C -0.13 -2.29 6.29 -24.57 -0.15 -2.44 16 19 C 0.13 2.74 5.34 -62.80 -0.34 2.41 16 20 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 21 N -0.60 -14.58 2.83 -145.54 -0.41 -15.00 16 22 C -0.31 -8.82 10.81 -15.06 -0.16 -8.98 16 23 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 24 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 25 N -0.93 -29.39 13.70 55.49 0.76 -28.63 16 26 Si 1.06 26.29 25.01 -169.99 -4.25 22.04 16 27 H -0.30 -6.93 6.60 56.52 0.37 -6.55 16 28 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 29 H -0.28 -6.26 4.94 56.52 0.28 -5.98 16 30 C 0.16 1.76 7.01 -81.60 -0.57 1.19 16 31 C -0.10 -0.93 9.57 36.01 0.34 -0.58 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.42 7.01 -51.93 -0.36 0.05 16 41 H 0.19 1.47 7.50 -52.49 -0.39 1.07 16 42 H 0.39 4.38 6.98 -40.82 -0.29 4.10 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.06 0.85 7.35 -51.93 -0.38 0.47 16 45 H 0.06 1.24 6.51 -51.93 -0.34 0.90 16 46 H 0.05 0.78 7.83 -51.93 -0.41 0.37 16 47 H 0.06 0.86 6.50 -51.93 -0.34 0.53 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.26 8.22 8.73 -40.82 -0.36 7.87 16 50 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.07 0.43 7.05 -51.92 -0.37 0.07 16 52 H 0.11 1.26 6.50 -51.93 -0.34 0.92 16 LS Contribution 400.01 15.07 6.03 6.03 Total: -1.00 -35.05 400.01 -9.00 -44.05 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.59 Total: 4.50 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.60 Total: -5.86 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.34 Total: -60.75 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -4.25 Total: 22.04 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.05 -9.00 -44.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096306912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.564 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds