Wall clock time and date at job start Wed Apr 1 2020 04:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 C 1.53002 * 109.47098 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47229 * 179.97438 * 4 3 2 6 6 C 1.34258 * 125.75601 * 124.99446 * 5 4 3 7 7 C 1.38045 * 107.41675 * 179.97438 * 6 5 4 8 8 C 1.47434 * 126.41434 * 179.73856 * 7 6 5 9 9 O 1.21599 * 120.00294 * 180.02562 * 8 7 6 10 10 N 1.34783 * 120.00019 * 0.02699 * 8 7 6 11 11 C 1.46496 * 120.00183 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.55769 * 32.10027 * 11 10 8 13 13 C 1.54850 * 110.62697 * 269.02599 * 11 10 8 14 14 C 1.55848 * 103.44459 * 241.50797 * 13 11 10 15 15 H 1.08999 * 115.55578 * 158.81162 * 14 13 11 16 16 C 1.55847 * 105.06453 * 288.17654 * 14 13 11 17 17 C 1.56688 * 103.59947 * 71.59193 * 16 14 13 18 18 C 1.55839 * 102.59762 * 0.33734 * 17 16 14 19 19 H 1.08995 * 115.56042 * 159.08492 * 18 17 16 20 20 N 1.50233 * 101.04799 * 32.94064 * 14 13 11 21 21 C 1.36939 * 130.83725 * 126.01036 * 20 14 13 22 22 H 1.08000 * 119.99703 * 180.02562 * 21 20 14 23 23 C 1.38811 * 119.99857 * 0.02687 * 21 20 14 24 24 N 1.31618 * 120.00162 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99546 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47229 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.46549 * 120.00243 * 25 23 21 28 28 H 1.48501 * 109.47009 * 239.99590 * 25 23 21 29 29 C 1.41284 * 107.17463 * 0.02562 * 7 6 5 30 30 C 1.50699 * 125.99253 * 179.97438 * 29 7 6 31 31 N 1.30451 * 108.02018 * 0.02562 * 29 7 6 32 32 H 1.09005 * 109.46928 * 60.00357 * 1 2 3 33 33 H 1.08993 * 109.47087 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47345 * 300.00577 * 1 2 3 35 35 H 1.09001 * 109.47345 * 239.99423 * 2 1 3 36 36 H 1.09005 * 109.46928 * 119.99643 * 2 1 3 37 37 H 1.09001 * 109.47494 * 59.99514 * 3 2 1 38 38 H 1.09005 * 109.46940 * 299.99636 * 3 2 1 39 39 H 1.08993 * 109.47069 * 59.99393 * 4 3 2 40 40 H 1.09005 * 109.46928 * 299.99643 * 4 3 2 41 41 H 1.07998 * 126.29157 * 359.97438 * 6 5 4 42 42 H 0.96999 * 119.99420 * 359.97438 * 10 8 7 43 43 H 1.08998 * 110.62935 * 359.97438 * 13 11 10 44 44 H 1.09007 * 110.62559 * 123.02231 * 13 11 10 45 45 H 1.08999 * 110.62576 * 190.31810 * 16 14 13 46 46 H 1.09005 * 110.62631 * 313.17711 * 16 14 13 47 47 H 1.08993 * 111.43765 * 241.93597 * 17 16 14 48 48 H 1.09002 * 110.60993 * 118.35054 * 17 16 14 49 49 H 0.97004 * 119.99545 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.47337 * 89.99659 * 30 29 7 51 51 H 1.08999 * 109.47450 * 209.99810 * 30 29 7 52 52 H 1.09002 * 109.46915 * 329.99806 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.9094 3.3553 0.8908 7 6 5.1116 4.6734 0.5341 8 6 5.9693 5.6476 1.2335 9 8 6.0625 6.7857 0.8156 10 7 6.6502 5.2766 2.3359 11 6 7.5028 6.2444 3.0305 12 1 7.0918 7.2499 2.9414 13 6 8.9489 6.1917 2.4793 14 6 9.7946 5.7738 3.7199 15 1 10.7664 5.3321 3.4993 16 6 9.8047 7.0284 4.6444 17 6 8.3407 7.0887 5.1996 18 6 7.6717 5.8512 4.5291 19 1 6.7738 5.4777 5.0213 20 7 8.8222 4.8885 4.4462 21 6 8.9461 3.6005 4.8945 22 1 8.1214 3.1244 5.4040 23 6 10.1317 2.9070 4.6940 24 7 11.1365 3.4871 4.0727 25 14 10.3009 1.1502 5.3062 26 1 9.0385 0.7326 5.9672 27 1 10.5802 0.2508 4.1580 28 1 11.4190 1.0710 6.2803 29 6 4.3376 4.9161 -0.6226 30 6 4.2455 6.2223 -1.3686 31 7 3.7158 3.8116 -0.9312 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 1.6766 1.9564 0.8899 38 1 1.6767 1.9563 -0.8901 39 1 3.9330 0.9287 -0.8907 40 1 3.9337 0.9286 0.8892 41 1 5.3540 2.8454 1.7326 42 1 6.5755 4.3688 2.6694 43 1 9.0318 5.4452 1.6894 44 1 9.2577 7.1722 2.1168 45 1 10.5208 6.9013 5.4563 46 1 10.0324 7.9266 4.0703 47 1 7.8379 8.0075 4.8982 48 1 8.3374 6.9860 6.2848 49 1 11.9649 3.0022 3.9323 50 1 5.0166 6.2564 -2.1382 51 1 3.2635 6.3063 -1.8343 52 1 4.3896 7.0489 -0.6729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098182535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:52 Heat of formation + Delta-G solvation = 65.013457 kcal Electronic energy + Delta-G solvation = -30975.659076 eV Core-core repulsion = 26977.350154 eV Total energy + Delta-G solvation = -3998.308923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.39077 -39.48561 -37.99839 -36.31195 -33.81481 -33.33110 -32.53502 -30.77377 -29.84433 -29.08433 -28.68899 -27.80934 -27.12880 -24.33371 -24.04537 -22.46152 -21.60132 -21.22659 -19.97248 -19.71910 -19.34110 -18.62393 -17.39273 -16.98476 -16.20535 -15.95736 -15.50032 -15.36026 -14.83214 -14.37729 -14.34324 -13.99719 -13.96039 -13.70700 -13.55690 -13.31928 -13.08661 -12.82152 -12.71649 -12.55500 -12.04755 -11.90991 -11.83777 -11.79538 -11.65536 -11.48267 -11.19061 -11.10660 -11.06438 -10.95770 -10.93236 -10.72094 -10.47771 -10.32168 -10.10421 -9.89253 -9.59471 -9.32790 -9.22385 -9.11997 -8.97494 -8.65639 -8.26741 -6.95472 -5.76733 -3.15601 1.58344 2.27137 2.29253 3.32038 3.36851 3.40555 3.78221 3.84823 4.12308 4.37724 4.41920 4.57849 4.63113 4.70791 4.84385 4.97147 5.08382 5.15025 5.21700 5.34137 5.36712 5.37216 5.49786 5.52064 5.57211 5.68327 5.71730 5.72948 5.77853 5.79270 5.88529 5.90728 5.99045 6.08261 6.09180 6.17021 6.20850 6.33820 6.46019 6.52961 6.61743 6.63243 6.78273 6.80191 6.85753 6.98685 7.20107 7.36998 7.45735 7.61958 7.78795 8.14423 8.17629 8.79461 9.05190 9.68357 10.50745 11.32211 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009246 B = 0.003171 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.632774 B = 8827.013841 C =11044.987292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.131 4.131 4 C 0.130 3.870 5 N -0.360 5.360 6 C 0.100 3.900 7 C -0.282 4.282 8 C 0.589 3.411 9 O -0.555 6.555 10 N -0.705 5.705 11 C 0.132 3.868 12 H 0.080 0.920 13 C -0.143 4.143 14 C 0.153 3.847 15 H 0.153 0.847 16 C -0.137 4.137 17 C -0.130 4.130 18 C 0.125 3.875 19 H 0.085 0.915 20 N -0.591 5.591 21 C -0.213 4.213 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.918 5.918 25 Si 0.913 3.087 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.129 3.871 30 C -0.075 4.075 31 N -0.305 5.305 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.183 0.817 42 H 0.398 0.602 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.253 0.747 50 H 0.077 0.923 51 H 0.066 0.934 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.965 -2.457 -6.777 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.169 4.169 4 C 0.009 3.991 5 N -0.138 5.138 6 C -0.051 4.051 7 C -0.297 4.297 8 C 0.376 3.624 9 O -0.434 6.434 10 N -0.353 5.353 11 C 0.025 3.975 12 H 0.098 0.902 13 C -0.183 4.183 14 C 0.047 3.953 15 H 0.169 0.831 16 C -0.176 4.176 17 C -0.170 4.170 18 C 0.016 3.984 19 H 0.103 0.897 20 N -0.312 5.312 21 C -0.341 4.341 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.566 5.566 25 Si 0.744 3.256 26 H -0.207 1.207 27 H -0.219 1.219 28 H -0.218 1.218 29 C -0.039 4.039 30 C -0.133 4.133 31 N -0.127 5.127 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.200 0.800 42 H 0.232 0.768 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.064 0.936 50 H 0.096 0.904 51 H 0.085 0.915 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.585 -2.674 -7.814 18.527 hybrid contribution 0.723 -1.206 1.167 1.827 sum -15.861 -3.881 -6.648 17.631 Atomic orbital electron populations 1.21746 0.95324 1.01789 1.02074 1.21469 0.96490 0.95662 1.02441 1.21900 0.93201 0.97886 1.03960 1.21887 0.95846 0.77101 1.04281 1.48396 1.34497 1.10303 1.20627 1.23192 0.92828 0.93973 0.95063 1.20376 1.11413 0.94545 1.03398 1.17233 0.78684 0.86501 0.79934 1.90683 1.66049 1.20224 1.66488 1.45844 1.46444 1.15332 1.27727 1.22592 0.90169 0.91354 0.93357 0.90173 1.23458 0.95203 0.99631 1.00046 1.23756 0.96854 0.86930 0.87780 0.83071 1.23358 0.95343 0.98967 0.99958 1.23188 0.97129 0.97126 0.99519 1.23143 0.92263 0.90715 0.92244 0.89683 1.46522 1.09796 1.09798 1.65058 1.19028 0.98584 0.86481 1.30011 0.90437 1.24696 0.96119 0.98479 1.01331 1.69476 1.04377 1.35931 1.46791 0.86027 0.77494 0.84187 0.77898 1.20667 1.21901 1.21813 1.22437 0.92885 0.94948 0.93583 1.20309 1.02081 0.91050 0.99878 1.77085 1.25057 0.96773 1.13770 0.92590 0.92518 0.92623 0.91580 0.91595 0.91266 0.90275 0.89452 0.88242 0.80009 0.76795 0.92251 0.92845 0.92701 0.93356 0.92763 0.92523 0.93600 0.90419 0.91461 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.73 5.93 -26.73 -0.16 -0.89 16 3 C -0.13 -1.01 5.39 -26.73 -0.14 -1.15 16 4 C 0.13 1.08 6.49 -4.04 -0.03 1.05 16 5 N -0.36 -4.39 3.65 -60.81 -0.22 -4.61 16 6 C 0.10 1.29 10.95 -16.56 -0.18 1.11 16 7 C -0.28 -4.39 6.13 -105.07 -0.64 -5.03 16 8 C 0.59 10.45 7.81 -12.51 -0.10 10.35 16 9 O -0.55 -11.14 14.56 5.28 0.08 -11.06 16 10 N -0.70 -12.26 5.06 -52.47 -0.27 -12.52 16 11 C 0.13 2.46 2.80 -65.44 -0.18 2.27 16 12 H 0.08 1.51 7.21 -51.93 -0.37 1.14 16 13 C -0.14 -2.93 6.23 -24.24 -0.15 -3.08 16 14 C 0.15 3.45 4.72 -62.80 -0.30 3.15 16 15 H 0.15 3.92 5.52 -51.93 -0.29 3.63 16 16 C -0.14 -2.69 6.49 -23.22 -0.15 -2.84 16 17 C -0.13 -2.33 6.58 -23.23 -0.15 -2.48 16 18 C 0.12 2.39 5.01 -62.80 -0.31 2.08 16 19 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 20 N -0.59 -13.65 2.99 -145.82 -0.44 -14.09 16 21 C -0.21 -5.40 10.59 -15.06 -0.16 -5.56 16 22 H 0.08 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 24 N -0.92 -25.31 10.47 55.49 0.58 -24.73 16 25 Si 0.91 20.85 29.55 -169.99 -5.02 15.82 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 C 0.13 1.94 7.26 -82.02 -0.60 1.35 16 30 C -0.07 -0.97 9.92 36.01 0.36 -0.62 16 31 N -0.30 -4.38 12.33 33.89 0.42 -3.96 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.62 8.06 -51.93 -0.42 0.20 16 41 H 0.18 1.86 7.46 -52.49 -0.39 1.47 16 42 H 0.40 6.56 7.58 -40.82 -0.31 6.25 16 43 H 0.06 1.32 7.98 -51.93 -0.41 0.91 16 44 H 0.05 1.03 7.82 -51.93 -0.41 0.62 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 47 H 0.05 0.86 7.81 -51.93 -0.41 0.46 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 50 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.10 1.37 6.55 -51.93 -0.34 1.03 16 LS Contribution 413.43 15.07 6.23 6.23 Total: -1.00 -30.95 413.43 -10.06 -41.01 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -8.79 Total: 9.10 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -2.63 Total: -1.18 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.07 Total: -59.92 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.95 -10.06 -41.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098182535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.022 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds