Wall clock time and date at job start Wed Apr 1 2020 05:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46965 * 2 1 4 4 C 1.53004 * 109.46965 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46862 * 180.02562 * 4 3 2 6 6 N 1.39930 * 125.75195 * 89.98010 * 5 4 3 7 7 C 1.30451 * 108.89655 * 180.02562 * 6 5 4 8 8 C 1.41287 * 108.02403 * 359.97438 * 7 6 5 9 9 C 1.47425 * 126.42056 * 179.97438 * 8 7 6 10 10 O 1.21607 * 120.00607 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99387 * 0.02562 * 9 8 7 12 12 C 1.46507 * 119.99455 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.68552 * 32.01432 * 12 11 9 14 14 C 1.54853 * 110.62456 * 269.02314 * 12 11 9 15 15 C 1.55847 * 103.44638 * 241.51415 * 14 12 11 16 16 H 1.08997 * 115.56393 * 158.81308 * 15 14 12 17 17 C 1.55847 * 105.06162 * 288.17626 * 15 14 12 18 18 C 1.55877 * 103.52933 * 72.43206 * 17 15 14 19 19 C 1.55846 * 102.97150 * 359.11585 * 18 17 15 20 20 H 1.09002 * 115.56047 * 159.69072 * 19 18 17 21 21 N 1.50240 * 101.04996 * 33.81862 * 19 18 17 22 22 C 1.36936 * 130.84094 * 125.33662 * 21 19 18 23 23 H 1.07998 * 119.99652 * 0.02562 * 22 21 19 24 24 C 1.38806 * 119.99943 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00533 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99635 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47071 * 90.00245 * 26 24 22 28 28 H 1.48495 * 109.47075 * 209.99763 * 26 24 22 29 29 H 1.48498 * 109.47523 * 329.99916 * 26 24 22 30 30 C 1.34254 * 125.75206 * 270.30555 * 5 4 3 31 31 C 1.50699 * 126.29613 * 359.96052 * 30 5 4 32 32 H 1.08993 * 109.47129 * 299.99706 * 1 2 3 33 33 H 1.09006 * 109.46727 * 60.00000 * 1 2 3 34 34 H 1.09002 * 109.46674 * 179.97438 * 1 2 3 35 35 H 1.09006 * 109.47042 * 240.00587 * 2 1 3 36 36 H 1.08996 * 109.47057 * 120.00473 * 2 1 3 37 37 H 1.08998 * 109.47017 * 60.00654 * 3 2 1 38 38 H 1.08996 * 109.47619 * 300.00129 * 3 2 1 39 39 H 1.08997 * 109.47061 * 59.99779 * 4 3 2 40 40 H 1.09004 * 109.47217 * 300.00190 * 4 3 2 41 41 H 1.07998 * 125.99035 * 179.97438 * 7 6 5 42 42 H 0.97001 * 120.00656 * 359.97438 * 11 9 8 43 43 H 1.08997 * 110.62526 * 123.02521 * 14 12 11 44 44 H 1.09000 * 110.76127 * 0.06594 * 14 12 11 45 45 H 1.09003 * 110.62865 * 190.31234 * 17 15 14 46 46 H 1.08998 * 110.62667 * 313.17604 * 17 15 14 47 47 H 1.09006 * 110.09627 * 241.13600 * 18 17 15 48 48 H 1.09001 * 111.60505 * 117.80684 * 18 17 15 49 49 H 0.97003 * 120.00245 * 179.97438 * 25 24 22 50 50 H 1.08993 * 109.47303 * 270.20767 * 31 30 5 51 51 H 1.09006 * 109.46497 * 30.20493 * 31 30 5 52 52 H 1.09001 * 109.47290 * 150.19797 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 7 4.3299 3.5944 1.1372 7 6 4.7458 4.7717 0.7595 8 6 4.7567 4.7991 -0.6531 9 6 5.1576 5.9346 -1.5035 10 8 5.1213 5.8301 -2.7145 11 7 5.5645 7.0887 -0.9386 12 6 5.9624 8.2174 -1.7837 13 1 5.3913 8.2234 -2.7121 14 6 7.4819 8.1693 -2.0780 15 6 8.0143 9.4938 -1.4527 16 1 9.0796 9.5103 -1.2225 17 6 7.4982 10.6227 -2.3950 18 6 5.9711 10.6837 -2.0886 19 6 5.7836 9.5644 -1.0205 20 1 4.8843 9.6431 -0.4096 21 7 7.0881 9.6513 -0.2803 22 6 7.3518 9.8214 1.0527 23 1 6.5380 9.9169 1.7562 24 6 8.6650 9.8710 1.4995 25 7 9.6569 9.7542 0.6422 26 14 9.0247 10.1038 3.3178 27 1 9.1115 8.7768 3.9790 28 1 10.3140 10.8225 3.4793 29 1 7.9345 10.8968 3.9406 30 6 4.3147 3.5656 -1.0879 31 6 4.1541 3.1303 -2.5217 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.6767 1.9564 -0.8899 39 1 3.9337 0.9285 -0.8891 40 1 3.9330 0.9288 0.8909 41 1 5.0317 5.5833 1.4121 42 1 5.5931 7.1723 0.0274 43 1 7.6645 8.1514 -3.1525 44 1 7.9415 7.3057 -1.5972 45 1 7.9677 11.5746 -2.1468 46 1 7.6817 10.3659 -3.4382 47 1 5.3992 10.4556 -2.9881 48 1 5.6813 11.6533 -1.6837 49 1 10.5746 9.7892 0.9545 50 1 5.0832 2.6801 -2.8710 51 1 3.3478 2.4001 -2.5915 52 1 3.9149 3.9959 -3.1396 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098183915.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:13 Heat of formation + Delta-G solvation = 64.676092 kcal Electronic energy + Delta-G solvation = -30945.700720 eV Core-core repulsion = 26947.377168 eV Total energy + Delta-G solvation = -3998.323552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.45789 -39.47352 -37.98956 -36.35621 -33.80264 -33.07050 -32.43761 -31.91763 -29.27705 -29.04903 -28.60041 -27.85201 -26.85603 -24.50050 -24.11775 -22.61862 -21.71701 -21.16664 -20.00803 -19.71574 -19.33632 -18.54742 -17.31410 -16.94724 -16.19705 -15.71926 -15.61781 -15.37877 -14.78293 -14.52155 -14.34441 -14.05101 -13.96155 -13.62169 -13.51328 -13.34900 -13.19323 -12.97815 -12.76347 -12.65106 -12.20089 -12.00587 -11.85711 -11.82669 -11.75717 -11.55663 -11.16958 -11.11709 -11.06223 -10.89771 -10.87282 -10.77812 -10.43418 -10.31223 -10.06793 -9.84985 -9.57383 -9.40733 -9.18350 -9.09708 -8.92854 -8.63475 -8.22524 -6.90718 -5.71310 -3.10115 1.57323 2.24766 2.31027 3.38656 3.43806 3.45745 3.79486 3.85561 4.23827 4.29927 4.43768 4.48995 4.57830 4.63253 4.87496 4.93932 4.98195 5.06159 5.18234 5.27344 5.30311 5.36996 5.39984 5.43922 5.45959 5.57329 5.65331 5.70541 5.73246 5.76350 5.80775 5.88285 5.91859 6.04394 6.12679 6.19077 6.22022 6.37371 6.47450 6.48672 6.57087 6.66570 6.80857 6.83699 6.88648 7.01545 7.22904 7.39867 7.50892 7.58030 7.83188 8.17946 8.21816 8.80917 9.10534 9.73883 10.55470 11.37665 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.002603 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.574415 B =10755.243259 C =12070.906017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.138 4.138 4 C 0.129 3.871 5 N -0.364 5.364 6 N -0.301 5.301 7 C 0.086 3.914 8 C -0.290 4.290 9 C 0.591 3.409 10 O -0.563 6.563 11 N -0.701 5.701 12 C 0.133 3.867 13 H 0.080 0.920 14 C -0.143 4.143 15 C 0.153 3.847 16 H 0.153 0.847 17 C -0.138 4.138 18 C -0.127 4.127 19 C 0.124 3.876 20 H 0.086 0.914 21 N -0.591 5.591 22 C -0.213 4.213 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.914 3.086 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.283 1.283 30 C 0.151 3.849 31 C -0.097 4.097 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.191 0.809 42 H 0.401 0.599 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.050 0.950 48 H 0.058 0.942 49 H 0.253 0.747 50 H 0.084 0.916 51 H 0.066 0.934 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.205 -16.162 -4.571 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.176 4.176 4 C 0.008 3.992 5 N -0.144 5.144 6 N -0.120 5.120 7 C -0.101 4.101 8 C -0.304 4.304 9 C 0.378 3.622 10 O -0.443 6.443 11 N -0.350 5.350 12 C 0.026 3.974 13 H 0.098 0.902 14 C -0.184 4.184 15 C 0.047 3.953 16 H 0.169 0.831 17 C -0.177 4.177 18 C -0.167 4.167 19 C 0.016 3.984 20 H 0.104 0.896 21 N -0.312 5.312 22 C -0.340 4.340 23 H 0.096 0.904 24 C -0.206 4.206 25 N -0.567 5.567 26 Si 0.745 3.255 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 C 0.019 3.981 31 C -0.155 4.155 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.208 0.792 42 H 0.235 0.765 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.064 0.936 50 H 0.102 0.898 51 H 0.085 0.915 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.322 -17.065 -4.115 22.655 hybrid contribution 0.443 0.699 0.893 1.217 sum -13.879 -16.366 -3.222 21.699 Atomic orbital electron populations 1.21756 0.95281 1.01842 1.02131 1.21449 0.96491 0.95505 1.02452 1.22055 0.93745 0.98134 1.03714 1.21805 0.94926 0.77802 1.04662 1.48477 1.50435 1.11998 1.03466 1.77167 1.22937 1.04517 1.07332 1.24116 0.96370 0.95513 0.94137 1.20142 1.20118 0.96572 0.93576 1.17177 0.76518 0.81655 0.86824 1.90671 1.56579 1.82950 1.14149 1.45759 1.65850 1.12659 1.10688 1.22551 0.95867 0.85777 0.93166 0.90234 1.23463 0.94692 1.01377 0.98832 1.23755 0.99154 0.88758 0.83641 0.83067 1.23231 0.95072 1.01108 0.98327 1.23032 0.97107 0.98881 0.97684 1.23167 0.91170 0.91936 0.92136 0.89606 1.46539 0.99161 1.83063 1.02458 1.18992 0.91923 1.41958 0.81177 0.90420 1.24691 0.95359 1.02828 0.97757 1.69462 0.98353 1.56940 1.31972 0.86084 0.77413 0.77608 0.84428 1.21710 1.21774 1.20837 1.21474 0.94955 0.90690 0.90965 1.20659 1.02519 1.03657 0.88687 0.92569 0.92582 0.92472 0.91592 0.91521 0.90726 0.91169 0.88803 0.88429 0.79250 0.76453 0.92933 0.92235 0.92810 0.93274 0.93101 0.92357 0.93596 0.89770 0.91534 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.62 5.93 -26.73 -0.16 -0.78 16 3 C -0.14 -0.97 5.54 -26.73 -0.15 -1.11 16 4 C 0.13 1.03 6.03 -4.04 -0.02 1.01 16 5 N -0.36 -4.45 3.58 -56.60 -0.20 -4.65 16 6 N -0.30 -4.36 12.50 30.86 0.39 -3.97 16 7 C 0.09 1.26 11.50 -16.98 -0.20 1.07 16 8 C -0.29 -4.50 6.13 -105.07 -0.64 -5.14 16 9 C 0.59 10.47 7.81 -12.52 -0.10 10.37 16 10 O -0.56 -11.05 14.49 5.27 0.08 -10.97 16 11 N -0.70 -12.50 5.07 -52.46 -0.27 -12.76 16 12 C 0.13 2.51 2.82 -65.43 -0.18 2.33 16 13 H 0.08 1.51 7.26 -51.93 -0.38 1.13 16 14 C -0.14 -2.96 6.22 -24.23 -0.15 -3.11 16 15 C 0.15 3.50 4.72 -62.80 -0.30 3.21 16 16 H 0.15 3.97 5.52 -51.93 -0.29 3.69 16 17 C -0.14 -2.74 6.46 -23.67 -0.15 -2.89 16 18 C -0.13 -2.32 6.53 -23.68 -0.15 -2.47 16 19 C 0.12 2.43 5.01 -62.80 -0.31 2.12 16 20 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 21 N -0.59 -13.96 2.98 -145.81 -0.43 -14.40 16 22 C -0.21 -5.53 10.59 -15.06 -0.16 -5.69 16 23 H 0.08 1.95 7.83 -52.49 -0.41 1.53 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 25 N -0.92 -25.81 10.46 55.49 0.58 -25.23 16 26 Si 0.91 21.48 29.55 -169.99 -5.02 16.45 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 C 0.15 2.01 7.01 -81.60 -0.57 1.44 16 31 C -0.10 -1.03 9.34 36.00 0.34 -0.69 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.56 7.64 -51.93 -0.40 0.16 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.19 2.43 7.50 -52.49 -0.39 2.04 16 42 H 0.40 6.94 7.61 -40.82 -0.31 6.63 16 43 H 0.05 1.02 7.82 -51.93 -0.41 0.61 16 44 H 0.06 1.34 7.98 -51.93 -0.41 0.93 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.87 7.82 -51.93 -0.41 0.47 16 47 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.07 0.50 7.71 -51.93 -0.40 0.10 16 52 H 0.11 1.35 6.51 -51.93 -0.34 1.01 16 LS Contribution 412.08 15.07 6.21 6.21 Total: -1.00 -31.33 412.08 -10.07 -41.41 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -8.76 Total: 9.08 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.64 Total: -1.16 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.06 Total: -61.02 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.33 -10.07 -41.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098183915.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.085 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds