Wall clock time and date at job start Wed Apr 1 2020 04:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 C 1.53003 * 109.47025 * 240.00038 * 2 1 3 5 5 N 1.46500 * 109.47179 * 119.99910 * 2 1 3 6 6 C 1.34257 * 125.75098 * 75.31907 * 5 2 1 7 7 C 1.38049 * 107.41558 * 180.14381 * 6 5 2 8 8 C 1.47428 * 126.41577 * 179.87413 * 7 6 5 9 9 O 1.21604 * 120.00230 * 359.70633 * 8 7 6 10 10 N 1.34772 * 119.99702 * 179.71351 * 8 7 6 11 11 C 1.46504 * 120.00001 * 179.97438 * 10 8 7 12 12 C 1.56376 * 112.70353 * 298.48133 * 11 10 8 13 13 C 1.54833 * 104.40182 * 262.02767 * 12 11 10 14 14 C 1.54844 * 102.72974 * 321.30265 * 13 12 11 15 15 C 1.54146 * 104.34719 * 38.22645 * 14 13 12 16 16 H 1.08991 * 111.89370 * 99.85215 * 15 14 13 17 17 C 1.54472 * 108.79101 * 224.04477 * 15 14 13 18 18 N 1.48334 * 104.41675 * 139.45933 * 17 15 14 19 19 C 1.36943 * 128.19641 * 138.27234 * 18 17 15 20 20 H 1.08005 * 119.99613 * 344.30577 * 19 18 17 21 21 C 1.38808 * 119.99791 * 164.30760 * 19 18 17 22 22 N 1.31619 * 120.00461 * 350.57067 * 21 19 18 23 23 Si 1.86810 * 119.99693 * 170.57531 * 21 19 18 24 24 H 1.48500 * 109.47163 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47051 * 120.00091 * 23 21 19 26 26 H 1.48504 * 109.46811 * 239.99745 * 23 21 19 27 27 C 1.48443 * 103.55350 * 318.39877 * 18 17 15 28 28 C 1.41288 * 107.16749 * 359.60677 * 7 6 5 29 29 N 1.30452 * 108.02704 * 0.24173 * 28 7 6 30 30 H 1.09000 * 109.47631 * 299.99635 * 1 2 3 31 31 H 1.09000 * 109.47745 * 59.99973 * 1 2 3 32 32 H 1.09009 * 109.46814 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47097 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46952 * 299.99995 * 3 2 1 35 35 H 1.09004 * 109.46971 * 60.00235 * 3 2 1 36 36 H 1.09001 * 109.47075 * 299.99879 * 4 2 1 37 37 H 1.08998 * 109.47192 * 60.00159 * 4 2 1 38 38 H 1.09000 * 109.46614 * 179.97438 * 4 2 1 39 39 H 1.07995 * 126.30003 * 359.97438 * 6 5 2 40 40 H 0.97003 * 120.00468 * 359.97438 * 10 8 7 41 41 H 1.09006 * 110.82996 * 143.09462 * 12 11 10 42 42 H 1.08996 * 110.14118 * 20.62004 * 12 11 10 43 43 H 1.08999 * 110.76158 * 202.99463 * 13 12 11 44 44 H 1.08995 * 110.75380 * 79.61140 * 13 12 11 45 45 H 1.08997 * 110.45361 * 279.50334 * 14 13 12 46 46 H 1.08998 * 110.45153 * 156.94478 * 14 13 12 47 47 H 1.09007 * 110.45974 * 258.22922 * 17 15 14 48 48 H 1.08997 * 110.46838 * 20.68342 * 17 15 14 49 49 H 0.96993 * 120.00026 * 180.02562 * 22 21 19 50 50 H 1.09009 * 110.34873 * 282.89294 * 27 18 17 51 51 H 1.09007 * 110.60787 * 160.42631 * 27 18 17 52 52 H 1.08007 * 125.98867 * 180.27668 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0195 -2.0192 1.3894 7 6 2.5570 -2.2545 2.6389 8 6 2.7516 -3.5706 3.2742 9 8 2.4199 -4.5835 2.6887 10 7 3.2970 -3.6511 4.5040 11 6 3.4898 -4.9589 5.1357 12 6 2.1452 -5.7251 5.3597 13 6 1.7843 -5.4452 6.8391 14 6 3.1624 -5.5010 7.5429 15 6 4.1290 -4.8357 6.5433 16 1 4.3373 -3.7991 6.8079 17 6 5.4195 -5.6807 6.4614 18 7 5.7683 -5.6833 5.0196 19 6 7.0049 -5.5468 4.4473 20 1 7.8314 -5.1695 5.0312 21 6 7.1959 -5.8935 3.1169 22 7 6.2466 -6.5235 2.4580 23 14 8.8007 -5.4657 2.2615 24 1 9.6974 -4.7631 3.2140 25 1 9.4573 -6.7112 1.7895 26 1 8.5226 -4.5823 1.1006 27 6 4.4586 -5.8658 4.3452 28 6 2.8916 -0.9983 3.1924 29 7 2.5676 -0.0770 2.3275 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2494 39 1 1.6627 -2.7664 0.6961 40 1 3.5619 -2.8432 4.9710 41 1 2.2765 -6.7947 5.1953 42 1 1.3739 -5.3308 4.6982 43 1 1.1206 -6.2176 7.2277 44 1 1.3351 -4.4581 6.9470 45 1 3.4553 -6.5349 7.7256 46 1 3.1357 -4.9408 8.4775 47 1 6.2154 -5.2184 7.0453 48 1 5.2328 -6.6964 6.8102 49 1 6.3803 -6.7661 1.5284 50 1 4.1421 -6.9071 4.4072 51 1 4.5153 -5.5471 3.3043 52 1 3.3379 -0.8303 4.1614 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098913557.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:21 Heat of formation + Delta-G solvation = 64.147456 kcal Electronic energy + Delta-G solvation = -31983.721084 eV Core-core repulsion = 27985.374609 eV Total energy + Delta-G solvation = -3998.346475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.40161 -39.66309 -37.70744 -36.76860 -34.25246 -33.09193 -31.45354 -30.78659 -30.20165 -28.84442 -27.80068 -27.75357 -27.45348 -24.56186 -24.48248 -23.06272 -22.17977 -20.81565 -20.18790 -19.64453 -19.01950 -18.44867 -17.40019 -16.65341 -15.97895 -15.51571 -15.38629 -14.79673 -14.76972 -14.65838 -14.34717 -14.07458 -13.90028 -13.53105 -13.46141 -13.26230 -12.80682 -12.64398 -12.60269 -12.49497 -12.36922 -12.35550 -12.11207 -11.60681 -11.54555 -11.51128 -11.26646 -11.15132 -10.93268 -10.80767 -10.72335 -10.59574 -10.43467 -10.25505 -9.93936 -9.84301 -9.71530 -9.61937 -9.49047 -9.07696 -8.57333 -8.51908 -8.15750 -6.71463 -5.65081 -3.01146 1.74244 2.27019 2.39873 3.43311 3.48741 3.51451 3.82204 4.04400 4.16304 4.39869 4.49968 4.54733 4.75460 4.82941 4.94406 5.10683 5.11404 5.14616 5.28675 5.30029 5.33848 5.37528 5.44097 5.46949 5.55762 5.57093 5.65570 5.72706 5.81914 5.85913 5.88654 5.92967 5.93678 6.01197 6.05285 6.16412 6.23344 6.30851 6.41276 6.54119 6.63409 6.66844 6.71314 6.84098 6.92365 6.93198 7.22715 7.56040 7.64030 7.69035 7.95521 8.25824 8.38788 8.98931 9.21884 9.86156 10.64936 11.47084 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009384 B = 0.003829 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.992267 B = 7311.508316 C = 9312.150859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.178 3.822 3 C -0.143 4.143 4 C -0.164 4.164 5 N -0.355 5.355 6 C 0.123 3.877 7 C -0.280 4.280 8 C 0.592 3.408 9 O -0.539 6.539 10 N -0.698 5.698 11 C 0.153 3.847 12 C -0.117 4.117 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.109 4.109 16 H 0.074 0.926 17 C 0.129 3.871 18 N -0.597 5.597 19 C -0.227 4.227 20 H 0.074 0.926 21 C -0.003 4.003 22 N -0.905 5.905 23 Si 0.905 3.095 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.159 3.841 28 C 0.077 3.923 29 N -0.299 5.299 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.182 0.818 40 H 0.390 0.610 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.027 0.973 49 H 0.252 0.748 50 H 0.026 0.974 51 H 0.102 0.898 52 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.475 13.445 -0.415 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.095 3.905 3 C -0.200 4.200 4 C -0.222 4.222 5 N -0.136 5.136 6 C -0.028 4.028 7 C -0.295 4.295 8 C 0.379 3.621 9 O -0.417 6.417 10 N -0.347 5.347 11 C 0.066 3.934 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.153 4.153 15 C -0.130 4.130 16 H 0.092 0.908 17 C 0.002 3.998 18 N -0.320 5.320 19 C -0.356 4.356 20 H 0.092 0.908 21 C -0.200 4.200 22 N -0.551 5.551 23 Si 0.735 3.265 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.032 3.968 28 C -0.110 4.110 29 N -0.118 5.118 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.199 0.801 40 H 0.224 0.776 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.063 0.937 50 H 0.044 0.956 51 H 0.120 0.880 52 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.605 13.999 -1.435 19.574 hybrid contribution 1.084 -0.340 -0.089 1.139 sum -12.521 13.659 -1.524 18.592 Atomic orbital electron populations 1.22275 0.92795 1.03353 1.03374 1.20798 0.94457 0.93856 0.81339 1.21909 1.02383 0.92751 1.03003 1.22296 1.02773 1.01285 0.95857 1.48733 1.46577 1.04194 1.14055 1.22799 0.96823 0.86185 0.96965 1.20432 1.16808 0.94587 0.97667 1.17108 0.77247 0.86970 0.80811 1.90778 1.51442 1.36353 1.63104 1.45503 1.63248 1.08667 1.17260 1.22411 0.94851 0.83535 0.92634 1.22976 0.97015 1.00496 0.95116 1.22512 0.96767 1.00633 0.96222 1.22417 0.94739 1.00802 0.97294 1.23012 0.96949 0.99656 0.93347 0.90806 1.21910 0.93337 0.95928 0.88643 1.45143 1.03038 1.84766 0.99037 1.18960 0.85926 1.36318 0.94368 0.90827 1.24874 0.97698 0.99616 0.97843 1.69921 1.32588 1.42619 1.09978 0.86163 0.83073 0.77600 0.79622 1.20445 1.21758 1.21829 1.21972 0.82172 0.93776 0.98866 1.24022 0.97958 0.89923 0.99133 1.77058 1.18356 1.22046 0.94380 0.91533 0.90297 0.91579 0.91490 0.90968 0.90938 0.91226 0.89965 0.91196 0.80086 0.77602 0.90845 0.91538 0.92194 0.92216 0.91247 0.92290 0.93661 0.95576 0.93736 0.95577 0.88026 0.79717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.72 37.16 0.32 -0.86 16 2 C 0.18 1.63 1.23 -131.82 -0.16 1.47 16 3 C -0.14 -1.19 8.07 37.16 0.30 -0.89 16 4 C -0.16 -1.32 8.28 37.16 0.31 -1.01 16 5 N -0.36 -4.51 3.41 -48.11 -0.16 -4.67 16 6 C 0.12 1.76 10.39 -16.56 -0.17 1.59 16 7 C -0.28 -4.54 6.13 -105.07 -0.64 -5.18 16 8 C 0.59 11.42 6.95 -12.52 -0.09 11.33 16 9 O -0.54 -12.29 14.53 5.27 0.08 -12.22 16 10 N -0.70 -12.53 5.29 -45.28 -0.24 -12.77 16 11 C 0.15 2.98 0.93 -128.13 -0.12 2.86 16 12 C -0.12 -2.06 5.75 -23.95 -0.14 -2.20 16 13 C -0.12 -1.73 6.90 -24.79 -0.17 -1.90 16 14 C -0.11 -1.62 6.36 -25.16 -0.16 -1.78 16 15 C -0.11 -1.87 3.67 -88.15 -0.32 -2.20 16 16 H 0.07 1.17 7.74 -51.93 -0.40 0.76 16 17 C 0.13 2.68 6.74 -2.26 -0.02 2.66 16 18 N -0.60 -15.50 3.38 -168.35 -0.57 -16.07 16 19 C -0.23 -6.47 10.37 -15.06 -0.16 -6.63 16 20 H 0.07 2.03 7.85 -52.48 -0.41 1.61 16 21 C 0.00 -0.07 5.40 -17.43 -0.09 -0.17 16 22 N -0.91 -27.84 10.89 55.49 0.60 -27.24 16 23 Si 0.90 22.71 29.56 -169.99 -5.03 17.68 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 C 0.16 4.00 4.86 -2.20 -0.01 3.99 16 28 C 0.08 1.09 11.50 -16.98 -0.20 0.89 16 29 N -0.30 -4.21 11.56 30.86 0.36 -3.85 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.66 8.03 -51.93 -0.42 0.25 16 36 H 0.07 0.56 7.33 -51.93 -0.38 0.18 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.18 2.34 7.52 -52.49 -0.39 1.95 16 40 H 0.39 5.91 7.28 -40.82 -0.30 5.61 16 41 H 0.07 1.36 7.26 -51.93 -0.38 0.99 16 42 H 0.07 1.22 6.83 -51.93 -0.35 0.87 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.00 7.19 -51.93 -0.37 0.63 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.04 0.90 8.14 -51.92 -0.42 0.47 16 48 H 0.03 0.55 7.21 -51.93 -0.37 0.17 16 49 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.03 0.71 7.24 -51.92 -0.38 0.34 16 51 H 0.10 2.99 5.16 -51.92 -0.27 2.72 16 52 H 0.19 2.06 7.50 -52.48 -0.39 1.66 16 LS Contribution 404.22 15.07 6.09 6.09 Total: -1.00 -35.24 404.22 -8.99 -44.23 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.61 Total: 6.84 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.52 Total: 1.97 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -0.01 Total: -64.60 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.24 -8.99 -44.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098913557.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.381 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds