Wall clock time and date at job start Wed Apr 1 2020 04:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47079 * 2 1 4 4 C 1.53002 * 109.47041 * 119.99934 * 2 1 3 5 5 N 1.46500 * 109.47069 * 175.00021 * 4 2 1 6 6 C 1.34264 * 125.75612 * 125.00095 * 5 4 2 7 7 C 1.38044 * 107.41739 * 180.20936 * 6 5 4 8 8 C 1.47435 * 126.41140 * 179.73890 * 7 6 5 9 9 O 1.21596 * 119.99982 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99430 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99535 * 180.02562 * 10 8 7 12 12 C 1.54187 * 111.60994 * 298.58073 * 11 10 8 13 13 C 1.56222 * 103.64983 * 260.32751 * 12 11 10 14 14 C 1.54856 * 103.17546 * 322.66321 * 13 12 11 15 15 C 1.54191 * 104.29890 * 37.76708 * 14 13 12 16 16 H 1.08994 * 112.24717 * 98.78663 * 15 14 13 17 17 C 1.53792 * 109.12097 * 223.08000 * 15 14 13 18 18 N 1.47231 * 106.35396 * 132.67112 * 17 15 14 19 19 C 1.36930 * 126.69955 * 148.78334 * 18 17 15 20 20 H 1.08006 * 120.00138 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00236 * 359.97438 * 19 18 17 22 22 N 1.31615 * 120.00043 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00243 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46782 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47113 * 119.99518 * 23 21 19 26 26 H 1.48499 * 109.47237 * 239.99839 * 23 21 19 27 27 C 1.47224 * 106.59722 * 328.76654 * 18 17 15 28 28 C 1.41293 * 107.17129 * 359.63934 * 7 6 5 29 29 N 1.30448 * 108.02045 * 0.36570 * 28 7 6 30 30 H 1.08995 * 109.47197 * 299.99977 * 1 2 3 31 31 H 1.08997 * 109.46735 * 60.00541 * 1 2 3 32 32 H 1.08998 * 109.47068 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47140 * 240.00050 * 2 1 3 34 34 H 1.09005 * 109.47187 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47164 * 299.99778 * 3 2 1 36 36 H 1.08995 * 109.47087 * 59.99956 * 3 2 1 37 37 H 1.09001 * 109.47171 * 55.00109 * 4 2 1 38 38 H 1.08993 * 109.47448 * 294.99710 * 4 2 1 39 39 H 1.08002 * 126.28609 * 359.93777 * 6 5 4 40 40 H 0.96994 * 120.00920 * 359.97438 * 10 8 7 41 41 H 1.08997 * 110.46927 * 20.29889 * 12 11 10 42 42 H 1.09005 * 110.46477 * 142.88849 * 12 11 10 43 43 H 1.09001 * 110.86828 * 204.05686 * 13 12 11 44 44 H 1.09002 * 110.38833 * 81.04143 * 13 12 11 45 45 H 1.08996 * 110.46987 * 279.05596 * 14 13 12 46 46 H 1.09007 * 110.46789 * 156.46629 * 14 13 12 47 47 H 1.09003 * 110.08476 * 13.45132 * 17 15 14 48 48 H 1.08998 * 110.12664 * 251.92031 * 17 15 14 49 49 H 0.97000 * 120.00394 * 179.97438 * 22 21 19 50 50 H 1.08997 * 110.07540 * 272.01048 * 27 18 17 51 51 H 1.08998 * 110.07756 * 150.45852 * 27 18 17 52 52 H 1.07994 * 125.98632 * 180.11912 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3560 -0.3963 2.1314 7 6 5.6326 -0.6799 1.6892 8 6 6.8907 -0.3801 2.3970 9 8 6.8622 0.1707 3.4807 10 7 8.0722 -0.7166 1.8428 11 6 9.3224 -0.4192 2.5464 12 6 9.5035 1.0961 2.7665 13 6 10.4821 1.5200 1.6249 14 6 11.4530 0.3175 1.5275 15 6 10.5558 -0.9157 1.7555 16 1 10.2684 -1.3955 0.8200 17 6 11.2758 -1.8953 2.6974 18 7 10.2899 -2.2905 3.7169 19 6 10.2205 -3.4950 4.3646 20 1 9.4475 -3.6698 5.0984 21 6 11.1435 -4.4913 4.0781 22 7 12.0852 -4.2786 3.1835 23 14 11.0493 -6.1342 4.9622 24 1 9.9087 -6.1198 5.9132 25 1 10.8523 -7.2204 3.9688 26 1 12.3120 -6.3683 5.7078 27 6 9.3935 -1.1378 3.9043 28 6 5.5076 -1.3134 0.4324 29 7 4.2377 -1.3924 0.1448 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8899 37 1 1.6054 -1.7198 1.2952 38 1 1.7517 -0.1584 2.1370 39 1 4.0940 0.0870 3.0610 40 1 8.0950 -1.1563 0.9786 41 1 8.5450 1.6095 2.6908 42 1 9.9643 1.2880 3.7355 43 1 11.0197 2.4298 1.8923 44 1 9.9389 1.6547 0.6896 45 1 12.2175 0.3811 2.3018 46 1 11.9121 0.2773 0.5397 47 1 12.1261 -1.4036 3.1700 48 1 11.6116 -2.7711 2.1422 49 1 12.7305 -4.9746 2.9836 50 1 9.7997 -0.4673 4.6616 51 1 8.4014 -1.4793 4.1995 52 1 6.3211 -1.6663 -0.1840 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099096748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:26 Heat of formation + Delta-G solvation = 57.694713 kcal Electronic energy + Delta-G solvation = -31301.157366 eV Core-core repulsion = 27302.531079 eV Total energy + Delta-G solvation = -3998.626287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.45835 -39.88562 -37.76545 -36.74790 -34.42075 -33.32048 -32.24418 -31.33593 -30.36459 -29.28795 -27.81159 -27.62335 -26.61427 -24.64147 -24.41318 -22.80247 -21.74390 -20.83494 -20.34053 -20.19949 -19.16237 -18.63225 -17.78594 -16.89500 -16.13244 -15.85630 -15.47460 -15.00363 -14.84816 -14.80427 -14.68803 -14.16040 -14.07878 -13.63315 -13.47681 -13.38024 -13.23343 -12.89528 -12.73023 -12.55692 -12.42564 -12.35707 -11.68991 -11.57451 -11.48165 -11.39521 -11.33919 -11.16774 -11.01869 -10.85781 -10.70899 -10.65065 -10.51097 -10.20120 -10.13478 -9.86488 -9.69059 -9.64900 -9.45237 -9.28906 -8.73174 -8.67024 -8.37254 -6.78871 -5.58407 -3.02392 1.55684 2.19680 2.22354 3.42581 3.48495 3.50907 3.64701 3.79646 4.06384 4.32947 4.48764 4.53133 4.63466 4.72809 4.84301 4.93699 5.02230 5.10032 5.13130 5.18455 5.24948 5.33854 5.35383 5.39804 5.47413 5.54159 5.62293 5.70836 5.77042 5.80983 5.86369 5.88967 5.92755 5.98345 6.08329 6.13835 6.25533 6.33442 6.37467 6.51430 6.54632 6.65996 6.72387 6.77719 6.85874 6.94486 7.30511 7.47098 7.52836 7.68241 7.87344 8.04931 8.45788 8.73020 9.27586 9.88094 10.56196 11.42537 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.002819 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.371233 B = 9931.534184 C =11450.873098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.148 4.148 4 C 0.134 3.866 5 N -0.360 5.360 6 C 0.122 3.878 7 C -0.285 4.285 8 C 0.592 3.408 9 O -0.550 6.550 10 N -0.700 5.700 11 C 0.164 3.836 12 C -0.117 4.117 13 C -0.124 4.124 14 C -0.113 4.113 15 C -0.112 4.112 16 H 0.074 0.926 17 C 0.139 3.861 18 N -0.598 5.598 19 C -0.210 4.210 20 H 0.077 0.923 21 C -0.015 4.015 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.135 3.865 28 C 0.081 3.919 29 N -0.297 5.297 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.185 0.815 40 H 0.394 0.606 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.011 0.989 48 H 0.123 0.877 49 H 0.251 0.749 50 H 0.025 0.975 51 H 0.049 0.951 52 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.133 11.925 -8.949 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.205 4.205 4 C 0.013 3.987 5 N -0.139 5.139 6 C -0.029 4.029 7 C -0.299 4.299 8 C 0.380 3.620 9 O -0.429 6.429 10 N -0.349 5.349 11 C 0.077 3.923 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.151 4.151 15 C -0.132 4.132 16 H 0.092 0.908 17 C 0.014 3.986 18 N -0.321 5.321 19 C -0.339 4.339 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.573 5.573 23 Si 0.744 3.256 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.008 3.992 28 C -0.107 4.107 29 N -0.117 5.117 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.202 0.798 40 H 0.228 0.772 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.029 0.971 48 H 0.140 0.860 49 H 0.062 0.938 50 H 0.043 0.957 51 H 0.067 0.933 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -19.066 11.689 -8.972 24.097 hybrid contribution 0.578 -0.850 0.660 1.222 sum -18.487 10.839 -8.312 22.986 Atomic orbital electron populations 1.21789 0.93833 1.02267 1.02477 1.21423 0.96214 0.96965 0.98191 1.21835 1.01525 0.95171 1.02008 1.21956 0.74156 1.02430 1.00157 1.48487 1.06717 1.44489 1.14219 1.22929 0.89067 0.96209 0.94663 1.20394 0.93874 1.16297 0.99375 1.17156 0.82340 0.78061 0.84490 1.90746 1.87497 1.43710 1.20928 1.45759 1.05062 1.61162 1.22951 1.21716 0.82404 0.94085 0.94087 1.22883 0.99255 0.94715 0.98720 1.22760 0.97168 0.97778 0.98436 1.22426 0.97538 0.93767 1.01357 1.22987 0.94013 0.96907 0.99325 0.90796 1.22076 0.89663 0.97407 0.89489 1.44596 1.31499 1.10600 1.45440 1.19153 1.10733 0.88339 1.15651 0.90517 1.24745 0.97781 0.98557 0.99874 1.69605 1.18934 1.32690 1.36057 0.85997 0.77228 0.83678 0.78653 1.20599 1.21834 1.21806 1.21692 0.95020 0.89774 0.92709 1.24072 0.94517 0.96859 0.95221 1.77104 1.04344 1.20128 1.10128 0.92315 0.91873 0.92222 0.89436 0.92540 0.92243 0.92570 0.89382 0.88381 0.79824 0.77152 0.91088 0.91001 0.92197 0.92284 0.91115 0.92101 0.97073 0.86011 0.93829 0.95707 0.93259 0.79523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.19 37.16 0.34 -0.33 16 2 C -0.11 -0.71 3.00 -90.62 -0.27 -0.98 16 3 C -0.15 -1.04 9.08 37.16 0.34 -0.70 16 4 C 0.13 0.94 5.88 -4.04 -0.02 0.92 16 5 N -0.36 -3.82 3.10 -60.81 -0.19 -4.01 16 6 C 0.12 1.44 11.25 -16.56 -0.19 1.26 16 7 C -0.28 -3.96 6.13 -105.06 -0.64 -4.61 16 8 C 0.59 9.96 6.79 -12.52 -0.09 9.88 16 9 O -0.55 -10.80 14.40 5.28 0.08 -10.72 16 10 N -0.70 -11.48 5.23 -46.88 -0.24 -11.72 16 11 C 0.16 3.02 0.94 -129.89 -0.12 2.90 16 12 C -0.12 -1.94 5.75 -24.38 -0.14 -2.08 16 13 C -0.12 -1.74 6.92 -24.02 -0.17 -1.91 16 14 C -0.11 -1.76 6.38 -25.13 -0.16 -1.92 16 15 C -0.11 -2.08 3.67 -88.69 -0.33 -2.40 16 16 H 0.07 1.30 7.69 -51.93 -0.40 0.90 16 17 C 0.14 3.34 5.77 -3.23 -0.02 3.32 16 18 N -0.60 -15.65 3.39 -171.10 -0.58 -16.23 16 19 C -0.21 -6.00 10.34 -15.06 -0.16 -6.16 16 20 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 21 C -0.01 -0.43 5.49 -17.43 -0.10 -0.52 16 22 N -0.92 -26.83 10.08 55.49 0.56 -26.27 16 23 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C 0.14 3.09 6.00 -3.23 -0.02 3.08 16 28 C 0.08 1.01 11.50 -16.98 -0.20 0.81 16 29 N -0.30 -3.72 12.24 30.86 0.38 -3.34 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.73 8.04 -51.93 -0.42 0.31 16 34 H 0.06 0.52 7.75 -51.93 -0.40 0.12 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.48 8.06 -51.93 -0.42 0.06 16 39 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.39 5.57 7.23 -40.82 -0.30 5.28 16 41 H 0.07 1.20 6.69 -51.93 -0.35 0.85 16 42 H 0.07 1.24 7.18 -51.93 -0.37 0.87 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 1.17 7.17 -51.93 -0.37 0.80 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.01 0.29 7.12 -51.93 -0.37 -0.08 16 48 H 0.12 3.29 5.44 -51.93 -0.28 3.01 16 49 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 50 H 0.03 0.59 7.13 -51.93 -0.37 0.22 16 51 H 0.05 1.20 6.73 -51.93 -0.35 0.85 16 52 H 0.19 1.86 7.50 -52.49 -0.39 1.47 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -33.59 404.62 -9.42 -43.01 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.57 Total: 5.21 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.93 Total: 0.55 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.08 Total: -61.58 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.59 -9.42 -43.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099096748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.703 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds