Wall clock time and date at job start Wed Apr 1 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47180 * 2 1 4 4 C 1.53000 * 109.46662 * 239.99910 * 2 1 3 5 5 N 1.46499 * 109.47170 * 60.00337 * 4 2 1 6 6 C 1.36932 * 120.00350 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99868 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00619 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99828 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00512 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46822 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47353 * 119.99761 * 10 8 6 13 13 H 1.48500 * 109.46847 * 240.00078 * 10 8 6 14 14 C 1.53001 * 109.46981 * 120.00339 * 2 1 3 15 15 C 1.53043 * 109.44748 * 179.97438 * 14 2 1 16 16 C 1.53191 * 109.31132 * 181.37889 * 15 14 2 17 17 N 1.46921 * 108.77411 * 305.35957 * 16 15 14 18 18 C 1.34778 * 120.63351 * 233.63167 * 17 16 15 19 19 O 1.21282 * 120.00258 * 179.97438 * 18 17 16 20 20 C 1.50698 * 119.99707 * 359.97438 * 18 17 16 21 21 C 1.50704 * 109.47000 * 179.97438 * 20 18 17 22 22 C 1.38598 * 120.80005 * 269.72553 * 21 20 18 23 23 N 1.32340 * 119.09775 * 179.71796 * 22 21 20 24 24 C 1.31792 * 120.82172 * 0.56881 * 23 22 21 25 25 N 1.31798 * 121.75261 * 359.70101 * 24 23 22 26 26 C 1.32331 * 120.81782 * 0.02562 * 25 24 23 27 27 C 1.46925 * 118.73795 * 53.61317 * 17 16 15 28 28 C 1.53046 * 109.46008 * 300.02190 * 14 2 1 29 29 H 1.09005 * 109.47243 * 300.00067 * 1 2 3 30 30 H 1.09000 * 109.47231 * 59.99938 * 1 2 3 31 31 H 1.09002 * 109.47199 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47302 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47089 * 300.00149 * 3 2 1 34 34 H 1.09005 * 109.47083 * 60.00395 * 3 2 1 35 35 H 1.09008 * 109.46946 * 179.97438 * 4 2 1 36 36 H 1.08992 * 109.47337 * 299.99946 * 4 2 1 37 37 H 0.97007 * 120.00299 * 359.97438 * 5 4 2 38 38 H 0.96993 * 120.00331 * 180.02562 * 9 8 6 39 39 H 1.09002 * 109.46300 * 59.99714 * 14 2 1 40 40 H 1.09004 * 109.49679 * 301.32867 * 15 14 2 41 41 H 1.08994 * 109.49744 * 61.42383 * 15 14 2 42 42 H 1.09002 * 109.58035 * 185.57574 * 16 15 14 43 43 H 1.09002 * 109.58818 * 65.15445 * 16 15 14 44 44 H 1.08996 * 109.47770 * 299.99990 * 20 18 17 45 45 H 1.09003 * 109.47015 * 60.00571 * 20 18 17 46 46 H 1.07997 * 120.45139 * 0.02562 * 22 21 20 47 47 H 1.07994 * 119.12266 * 179.72948 * 24 23 22 48 48 H 1.08001 * 120.44420 * 180.02562 * 26 25 24 49 49 H 1.09003 * 109.59222 * 186.59958 * 27 17 16 50 50 H 1.09006 * 109.70276 * 66.24587 * 27 17 16 51 51 H 1.08996 * 109.49923 * 298.58843 * 28 14 2 52 52 H 1.09003 * 109.49048 * 58.64957 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.5516 -0.0306 -2.4454 6 6 1.8827 -0.4981 -3.6891 7 1 2.5042 -1.3758 -3.7883 8 6 1.4205 0.1565 -4.8225 9 7 0.6634 1.2265 -4.7018 10 14 1.8716 -0.4817 -6.5192 11 1 2.7252 -1.6891 -6.3830 12 1 0.6340 -0.8310 -7.2619 13 1 2.6147 0.5682 -7.2614 14 6 2.0400 -0.7213 1.2492 15 6 3.5704 -0.7216 1.2484 16 6 4.0776 -1.4743 2.4824 17 7 3.4750 -0.8766 3.6817 18 6 4.2485 -0.4568 4.7024 19 8 3.7390 0.0354 5.6868 20 6 5.7465 -0.5990 4.6206 21 6 6.3721 -0.0575 5.8802 22 6 6.7468 1.2738 5.9707 23 7 7.2881 1.7150 7.0949 24 6 7.4819 0.9034 8.1150 25 7 7.1432 -0.3693 8.0629 26 6 6.5921 -0.8801 6.9737 27 6 2.0131 -0.7447 3.7469 28 6 1.5292 -0.0001 2.4987 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.1300 -0.7209 -1.2495 36 1 1.6766 -1.7489 -1.2493 37 1 0.9936 0.7579 -2.3564 38 1 0.3401 1.6837 -5.4937 39 1 1.6765 -1.7490 1.2490 40 1 3.9336 -1.2147 0.3467 41 1 3.9344 0.3055 1.2736 42 1 5.1630 -1.3928 2.5395 43 1 3.7910 -2.5238 2.4137 44 1 6.0060 -1.6518 4.5092 45 1 6.1181 -0.0403 3.7616 46 1 6.5946 1.9432 5.1370 47 1 7.9298 1.2915 9.0178 48 1 6.3164 -1.9237 6.9377 49 1 1.7363 -0.1819 4.6383 50 1 1.5561 -1.7338 3.7826 51 1 1.9125 1.0202 2.5120 52 1 0.4394 0.0208 2.4866 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101535645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:43 Heat of formation + Delta-G solvation = 14.308665 kcal Electronic energy + Delta-G solvation = -30678.413185 eV Core-core repulsion = 26677.905537 eV Total energy + Delta-G solvation = -4000.507648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.47909 -40.49505 -38.86363 -36.29524 -34.25989 -34.02537 -33.78528 -31.73666 -31.34164 -30.02650 -28.57172 -26.93420 -25.98870 -25.23574 -24.95697 -23.86942 -22.95452 -22.53301 -21.04826 -19.29466 -18.19692 -17.99211 -17.96427 -17.56166 -17.04462 -16.31226 -15.69051 -15.04633 -14.86216 -14.72555 -14.65461 -14.21879 -14.16553 -14.02371 -13.98584 -13.89320 -13.80434 -13.29238 -13.22160 -12.82592 -12.65921 -12.47544 -12.35391 -11.85415 -11.70310 -11.54977 -11.34748 -11.17943 -11.14761 -10.99612 -10.90576 -10.82247 -10.73248 -10.33209 -10.23163 -10.14732 -10.06525 -9.74068 -9.64856 -9.57559 -9.55978 -8.89244 -8.84758 -6.90148 -5.77868 -3.05252 0.49952 0.74496 2.29751 2.69236 3.41228 3.44275 3.46809 3.49100 3.78933 3.87109 4.12051 4.21517 4.25408 4.33566 4.55137 4.58001 4.73561 4.77551 4.89427 4.94077 5.04398 5.07883 5.12167 5.21021 5.29492 5.43947 5.46572 5.47222 5.54436 5.59013 5.61196 5.74367 5.85283 5.90961 5.98190 6.01278 6.03725 6.08997 6.15900 6.29860 6.33615 6.34582 6.36265 6.57062 6.58465 6.69574 6.73172 6.92861 6.95380 7.10580 7.68826 7.71816 7.85525 8.41924 9.53007 10.12914 10.46885 11.45244 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.001962 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.186470 B =14264.454281 C =14768.680351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.138 4.138 4 C 0.163 3.837 5 N -0.730 5.730 6 C -0.236 4.236 7 H 0.069 0.931 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.292 1.292 14 C -0.071 4.071 15 C -0.136 4.136 16 C 0.104 3.896 17 N -0.606 5.606 18 C 0.516 3.484 19 O -0.541 6.541 20 C -0.095 4.095 21 C -0.169 4.169 22 C 0.163 3.837 23 N -0.518 5.518 24 C 0.289 3.711 25 N -0.520 5.520 26 C 0.161 3.839 27 C 0.112 3.888 28 C -0.132 4.132 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.166 0.834 47 H 0.196 0.804 48 H 0.165 0.835 49 H 0.089 0.911 50 H 0.066 0.934 51 H 0.070 0.930 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.220 -4.937 22.240 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.195 4.195 4 C 0.035 3.965 5 N -0.375 5.375 6 C -0.367 4.367 7 H 0.087 0.913 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.736 3.264 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.220 1.220 14 C -0.090 4.090 15 C -0.174 4.174 16 C -0.019 4.019 17 N -0.340 5.340 18 C 0.304 3.696 19 O -0.418 6.418 20 C -0.136 4.136 21 C -0.174 4.174 22 C -0.003 4.003 23 N -0.231 5.231 24 C 0.002 3.998 25 N -0.233 5.233 26 C -0.005 4.005 27 C -0.010 4.010 28 C -0.170 4.170 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.220 0.780 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.183 0.817 47 H 0.212 0.788 48 H 0.182 0.818 49 H 0.107 0.893 50 H 0.085 0.915 51 H 0.089 0.911 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.433 -4.414 23.484 26.073 hybrid contribution -0.426 -0.438 -1.960 2.053 sum 10.007 -4.852 21.523 24.226 Atomic orbital electron populations 1.21855 0.94667 1.01448 1.01563 1.20684 0.95728 0.95765 0.94300 1.21888 1.00574 0.95606 1.01454 1.20729 0.95888 0.94120 0.85762 1.42442 1.61314 1.33391 1.00322 1.19266 1.25314 1.08461 0.83695 0.91300 1.24723 1.00650 0.98011 0.97752 1.69660 1.39495 1.20947 1.28172 0.86143 0.77503 0.77833 0.84872 1.20632 1.21943 1.21951 1.21091 0.94408 0.99483 0.94059 1.22137 0.96547 1.01535 0.97198 1.21901 0.98051 0.97504 0.84409 1.48143 1.07328 1.60930 1.17587 1.20387 0.88703 0.77877 0.82638 1.90728 1.75219 1.44342 1.31483 1.20578 0.92456 1.04161 0.96398 1.21096 1.01765 0.96687 0.97803 1.23116 0.89226 0.92696 0.95301 1.68442 1.14367 1.39324 1.01001 1.24985 0.92580 0.85533 0.96737 1.68431 1.12383 1.15559 1.26916 1.23069 0.89922 1.00362 0.87120 1.21657 0.78790 1.00877 0.99722 1.22094 1.01428 0.99955 0.93500 0.93531 0.91514 0.93194 0.93025 0.91644 0.93658 0.96285 0.96734 0.78048 0.93619 0.91150 0.89577 0.90957 0.89846 0.90952 0.87213 0.87049 0.81668 0.78777 0.81789 0.89294 0.91531 0.91130 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 7.95 37.16 0.30 -1.76 16 2 C -0.06 -0.92 0.33 -154.51 -0.05 -0.98 16 3 C -0.14 -2.04 7.60 37.16 0.28 -1.76 16 4 C 0.16 3.01 4.80 -4.04 -0.02 2.99 16 5 N -0.73 -17.57 5.00 -59.91 -0.30 -17.87 16 6 C -0.24 -6.42 9.99 -15.06 -0.15 -6.57 16 7 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 10 Si 0.90 22.07 29.55 -169.99 -5.02 17.04 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 C -0.07 -0.77 1.51 -90.57 -0.14 -0.91 16 15 C -0.14 -1.28 4.65 -26.61 -0.12 -1.40 16 16 C 0.10 0.72 6.34 -3.71 -0.02 0.70 16 17 N -0.61 -5.28 2.97 -172.77 -0.51 -5.80 16 18 C 0.52 4.95 7.69 -10.99 -0.08 4.87 16 19 O -0.54 -7.42 15.45 5.56 0.09 -7.34 16 20 C -0.09 -0.57 4.23 -29.03 -0.12 -0.69 16 21 C -0.17 -1.37 4.41 -104.36 -0.46 -1.83 16 22 C 0.16 1.46 11.01 -17.20 -0.19 1.27 16 23 N -0.52 -5.29 10.44 -14.58 -0.15 -5.45 16 24 C 0.29 2.67 12.29 -92.15 -1.13 1.54 16 25 N -0.52 -5.16 10.44 -14.58 -0.15 -5.31 16 26 C 0.16 1.38 11.01 -17.20 -0.19 1.19 16 27 C 0.11 1.05 6.43 -3.71 -0.02 1.03 16 28 C -0.13 -1.31 4.65 -26.61 -0.12 -1.44 16 29 H 0.05 0.59 6.40 -51.93 -0.33 0.26 16 30 H 0.07 1.20 6.86 -51.93 -0.36 0.84 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.73 6.46 -51.93 -0.34 0.40 16 33 H 0.06 1.17 6.86 -51.93 -0.36 0.81 16 34 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 35 H 0.02 0.35 6.40 -51.92 -0.33 0.02 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.38 9.76 5.36 -40.82 -0.22 9.54 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.87 6.36 -51.93 -0.33 0.54 16 41 H 0.07 0.72 6.51 -51.93 -0.34 0.39 16 42 H 0.08 0.38 5.93 -51.93 -0.31 0.07 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.11 0.39 7.90 -51.93 -0.41 -0.02 16 45 H 0.11 0.47 7.65 -51.93 -0.40 0.07 16 46 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.20 1.17 8.06 -52.49 -0.42 0.74 16 48 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 49 H 0.09 0.96 7.01 -51.93 -0.36 0.60 16 50 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.07 0.77 6.51 -51.93 -0.34 0.44 16 52 H 0.08 0.78 6.36 -51.93 -0.33 0.45 16 LS Contribution 398.66 15.07 6.01 6.01 Total: -1.00 -34.40 398.66 -9.68 -44.08 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -8.01 Total: 5.95 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.35 Total: -4.30 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -0.39 Total: -61.45 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.09 Total: -7.34 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.40 -9.68 -44.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101535645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.390 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds