Wall clock time and date at job start Wed Apr 1 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47180 * 2 1 4 4 C 1.53000 * 109.46662 * 239.99910 * 2 1 3 5 5 N 1.46499 * 109.47170 * 60.00337 * 4 2 1 6 6 C 1.36932 * 120.00350 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99868 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00619 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99828 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00512 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46822 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47353 * 119.99761 * 10 8 6 13 13 H 1.48500 * 109.46847 * 240.00078 * 10 8 6 14 14 C 1.53001 * 109.46981 * 120.00339 * 2 1 3 15 15 C 1.53043 * 109.44748 * 179.97438 * 14 2 1 16 16 C 1.53191 * 109.31132 * 181.37889 * 15 14 2 17 17 N 1.46921 * 108.77411 * 305.35957 * 16 15 14 18 18 C 1.34778 * 120.63351 * 233.63167 * 17 16 15 19 19 O 1.21282 * 120.00258 * 179.97438 * 18 17 16 20 20 C 1.50698 * 119.99707 * 359.97438 * 18 17 16 21 21 C 1.50704 * 109.47000 * 179.97438 * 20 18 17 22 22 C 1.38598 * 120.80005 * 269.72553 * 21 20 18 23 23 N 1.32340 * 119.09775 * 179.71796 * 22 21 20 24 24 C 1.31792 * 120.82172 * 0.56881 * 23 22 21 25 25 N 1.31798 * 121.75261 * 359.70101 * 24 23 22 26 26 C 1.32331 * 120.81782 * 0.02562 * 25 24 23 27 27 C 1.46925 * 118.73795 * 53.61317 * 17 16 15 28 28 C 1.53046 * 109.46008 * 300.02190 * 14 2 1 29 29 H 1.09005 * 109.47243 * 300.00067 * 1 2 3 30 30 H 1.09000 * 109.47231 * 59.99938 * 1 2 3 31 31 H 1.09002 * 109.47199 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47302 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47089 * 300.00149 * 3 2 1 34 34 H 1.09005 * 109.47083 * 60.00395 * 3 2 1 35 35 H 1.09008 * 109.46946 * 179.97438 * 4 2 1 36 36 H 1.08992 * 109.47337 * 299.99946 * 4 2 1 37 37 H 0.97007 * 120.00299 * 359.97438 * 5 4 2 38 38 H 0.96993 * 120.00331 * 180.02562 * 9 8 6 39 39 H 1.09002 * 109.46300 * 59.99714 * 14 2 1 40 40 H 1.09004 * 109.49679 * 301.32867 * 15 14 2 41 41 H 1.08994 * 109.49744 * 61.42383 * 15 14 2 42 42 H 1.09002 * 109.58035 * 185.57574 * 16 15 14 43 43 H 1.09002 * 109.58818 * 65.15445 * 16 15 14 44 44 H 1.08996 * 109.47770 * 299.99990 * 20 18 17 45 45 H 1.09003 * 109.47015 * 60.00571 * 20 18 17 46 46 H 1.07997 * 120.45139 * 0.02562 * 22 21 20 47 47 H 1.07994 * 119.12266 * 179.72948 * 24 23 22 48 48 H 1.08001 * 120.44420 * 180.02562 * 26 25 24 49 49 H 1.09003 * 109.59222 * 186.59958 * 27 17 16 50 50 H 1.09006 * 109.70276 * 66.24587 * 27 17 16 51 51 H 1.08996 * 109.49923 * 298.58843 * 28 14 2 52 52 H 1.09003 * 109.49048 * 58.64957 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.5516 -0.0306 -2.4454 6 6 1.8827 -0.4981 -3.6891 7 1 2.5042 -1.3758 -3.7883 8 6 1.4205 0.1565 -4.8225 9 7 0.6634 1.2265 -4.7018 10 14 1.8716 -0.4817 -6.5192 11 1 2.7252 -1.6891 -6.3830 12 1 0.6340 -0.8310 -7.2619 13 1 2.6147 0.5682 -7.2614 14 6 2.0400 -0.7213 1.2492 15 6 3.5704 -0.7216 1.2484 16 6 4.0776 -1.4743 2.4824 17 7 3.4750 -0.8766 3.6817 18 6 4.2485 -0.4568 4.7024 19 8 3.7390 0.0354 5.6868 20 6 5.7465 -0.5990 4.6206 21 6 6.3721 -0.0575 5.8802 22 6 6.7468 1.2738 5.9707 23 7 7.2881 1.7150 7.0949 24 6 7.4819 0.9034 8.1150 25 7 7.1432 -0.3693 8.0629 26 6 6.5921 -0.8801 6.9737 27 6 2.0131 -0.7447 3.7469 28 6 1.5292 -0.0001 2.4987 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.1300 -0.7209 -1.2495 36 1 1.6766 -1.7489 -1.2493 37 1 0.9936 0.7579 -2.3564 38 1 0.3401 1.6837 -5.4937 39 1 1.6765 -1.7490 1.2490 40 1 3.9336 -1.2147 0.3467 41 1 3.9344 0.3055 1.2736 42 1 5.1630 -1.3928 2.5395 43 1 3.7910 -2.5238 2.4137 44 1 6.0060 -1.6518 4.5092 45 1 6.1181 -0.0403 3.7616 46 1 6.5946 1.9432 5.1370 47 1 7.9298 1.2915 9.0178 48 1 6.3164 -1.9237 6.9377 49 1 1.7363 -0.1819 4.6383 50 1 1.5561 -1.7338 3.7826 51 1 1.9125 1.0202 2.5120 52 1 0.4394 0.0208 2.4866 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101535645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:41 Heat of formation + Delta-G solvation = -6.587312 kcal Electronic energy + Delta-G solvation = -30679.319303 eV Core-core repulsion = 26677.905537 eV Total energy + Delta-G solvation = -4001.413765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.10710 -41.26878 -39.85318 -37.36071 -35.48816 -34.82633 -34.67097 -33.07131 -32.12859 -31.53636 -29.21904 -28.14986 -27.47317 -26.29089 -25.57946 -24.93477 -23.97156 -23.59084 -21.97492 -20.08866 -19.46607 -18.97683 -18.60741 -18.56529 -18.08310 -17.01402 -16.64098 -16.44095 -16.00081 -15.68929 -15.48326 -15.35085 -15.20262 -15.02303 -14.85565 -14.63867 -14.58307 -14.50553 -14.14508 -14.00865 -13.90716 -13.22264 -13.13655 -13.06336 -12.96660 -12.79947 -12.75150 -12.59612 -12.23518 -12.05497 -11.97167 -11.86712 -11.83353 -11.82820 -11.69015 -11.21916 -11.15865 -10.92755 -10.90758 -10.78843 -10.30134 -10.22553 -9.59150 -8.90269 -7.91397 -5.17713 -0.11301 0.11543 1.48371 1.48573 1.58505 1.62715 2.05243 2.58627 2.80962 3.24442 3.29275 3.42571 3.57444 3.64969 3.68115 3.73470 3.82662 3.86379 3.91049 4.17243 4.26156 4.31904 4.33586 4.42233 4.45376 4.45804 4.53636 4.57522 4.65957 4.69267 4.86614 4.88888 4.90999 4.91438 4.97345 5.00505 5.03910 5.07715 5.15467 5.20883 5.27748 5.29906 5.39406 5.42734 5.46405 5.52549 5.59782 5.69557 5.73585 5.96379 6.32040 6.45438 7.08442 7.17944 7.38351 8.19296 8.40182 9.32664 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.001962 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.186470 B =14264.454281 C =14768.680351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.055 4.055 3 C -0.131 4.131 4 C 0.160 3.840 5 N -0.742 5.742 6 C -0.235 4.235 7 H 0.076 0.924 8 C -0.080 4.080 9 N -0.971 5.971 10 Si 0.969 3.031 11 H -0.264 1.264 12 H -0.297 1.297 13 H -0.296 1.296 14 C -0.063 4.063 15 C -0.136 4.136 16 C 0.107 3.893 17 N -0.604 5.604 18 C 0.514 3.486 19 O -0.589 6.589 20 C -0.088 4.088 21 C -0.168 4.168 22 C 0.147 3.853 23 N -0.542 5.542 24 C 0.277 3.723 25 N -0.540 5.540 26 C 0.150 3.850 27 C 0.114 3.886 28 C -0.123 4.123 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.063 0.937 35 H 0.028 0.972 36 H 0.014 0.986 37 H 0.374 0.626 38 H 0.249 0.751 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.144 0.856 45 H 0.136 0.864 46 H 0.181 0.819 47 H 0.216 0.784 48 H 0.188 0.812 49 H 0.072 0.928 50 H 0.079 0.921 51 H 0.060 0.940 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.767 -6.923 22.823 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 C -0.188 4.188 4 C 0.034 3.966 5 N -0.386 5.386 6 C -0.368 4.368 7 H 0.094 0.906 8 C -0.272 4.272 9 N -0.623 5.623 10 Si 0.799 3.201 11 H -0.189 1.189 12 H -0.224 1.224 13 H -0.223 1.223 14 C -0.082 4.082 15 C -0.174 4.174 16 C -0.015 4.015 17 N -0.337 5.337 18 C 0.304 3.696 19 O -0.470 6.470 20 C -0.128 4.128 21 C -0.173 4.173 22 C -0.019 4.019 23 N -0.256 5.256 24 C -0.010 4.010 25 N -0.254 5.254 26 C -0.015 4.015 27 C -0.008 4.008 28 C -0.161 4.161 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.032 0.968 37 H 0.208 0.792 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.134 0.866 43 H 0.106 0.894 44 H 0.162 0.838 45 H 0.154 0.846 46 H 0.198 0.802 47 H 0.232 0.768 48 H 0.205 0.795 49 H 0.090 0.910 50 H 0.098 0.902 51 H 0.079 0.921 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.009 -6.448 24.069 27.661 hybrid contribution -0.931 0.161 -2.092 2.296 sum 11.078 -6.287 21.977 25.401 Atomic orbital electron populations 1.21815 0.95182 1.01383 1.00829 1.20594 0.95240 0.95450 0.94259 1.21813 1.00899 0.95712 1.00422 1.20936 0.96209 0.93899 0.85552 1.42683 1.61213 1.33402 1.01256 1.19687 1.24036 1.08003 0.85029 0.90634 1.25520 1.01547 0.98717 1.01419 1.69822 1.41330 1.22527 1.28619 0.85120 0.76996 0.77588 0.80372 1.18872 1.22437 1.22344 1.21007 0.95751 0.99256 0.92189 1.22103 0.95083 1.01702 0.98476 1.22039 0.99777 0.97541 0.82110 1.48219 1.06959 1.60494 1.17991 1.20962 0.90064 0.76724 0.81876 1.90719 1.76330 1.46526 1.33397 1.20673 0.89433 1.06569 0.96119 1.21282 1.01209 0.96217 0.98562 1.23516 0.89178 0.93676 0.95503 1.68458 1.15327 1.40007 1.01766 1.25443 0.92605 0.85551 0.97373 1.68466 1.13206 1.15903 1.27815 1.23557 0.89424 1.01595 0.86943 1.21558 0.79715 1.01152 0.98419 1.21994 1.01506 0.99331 0.93314 0.91203 0.95260 0.92894 0.92370 0.95424 0.91834 0.95386 0.96820 0.79218 0.94263 0.90411 0.90004 0.91500 0.86646 0.89439 0.83836 0.84570 0.80194 0.76751 0.79546 0.90959 0.90237 0.92103 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 7.95 71.98 0.57 -3.39 16 2 C -0.06 -1.53 0.33 -52.18 -0.02 -1.54 16 3 C -0.13 -3.82 7.60 71.98 0.55 -3.28 16 4 C 0.16 5.79 4.80 86.38 0.41 6.20 16 5 N -0.74 -36.12 5.00 -343.46 -1.72 -37.83 16 6 C -0.24 -12.79 9.99 84.03 0.84 -11.95 16 7 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 8 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 9 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 10 Si 0.97 45.61 29.55 68.60 2.03 47.63 16 11 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 13 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 14 C -0.06 -1.21 1.51 -10.76 -0.02 -1.23 16 15 C -0.14 -2.10 4.65 30.67 0.14 -1.96 16 16 C 0.11 1.00 6.34 86.36 0.55 1.55 16 17 N -0.60 -8.56 2.97 -818.91 -2.43 -11.00 16 18 C 0.51 8.44 7.69 87.66 0.67 9.12 16 19 O -0.59 -15.47 15.45 -3.03 -0.05 -15.52 16 20 C -0.09 -0.72 4.23 29.10 0.12 -0.59 16 21 C -0.17 -2.36 4.41 -19.69 -0.09 -2.45 16 22 C 0.15 2.44 11.01 84.70 0.93 3.38 16 23 N -0.54 -10.80 10.44 -200.05 -2.09 -12.89 16 24 C 0.28 5.00 12.29 180.88 2.22 7.22 16 25 N -0.54 -10.26 10.44 -200.05 -2.09 -12.34 16 26 C 0.15 2.30 11.01 84.70 0.93 3.24 16 27 C 0.11 1.89 6.43 86.36 0.56 2.45 16 28 C -0.12 -2.19 4.65 30.67 0.14 -2.05 16 29 H 0.07 1.70 6.40 -2.38 -0.02 1.68 16 30 H 0.03 1.07 6.86 -2.39 -0.02 1.05 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.59 6.46 -2.39 -0.02 1.58 16 33 H 0.03 1.00 6.86 -2.39 -0.02 0.99 16 34 H 0.06 1.59 6.46 -2.38 -0.02 1.58 16 35 H 0.03 0.99 6.40 -2.38 -0.02 0.97 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.37 19.66 5.36 -92.70 -0.50 19.16 16 38 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.38 6.36 -2.39 -0.02 1.37 16 41 H 0.07 1.13 6.51 -2.39 -0.02 1.12 16 42 H 0.12 0.40 5.93 -2.39 -0.01 0.38 16 43 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.14 0.24 7.90 -2.39 -0.02 0.22 16 45 H 0.14 0.49 7.65 -2.39 -0.02 0.47 16 46 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 47 H 0.22 2.50 8.06 -2.91 -0.02 2.48 16 48 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 49 H 0.07 1.49 7.01 -2.39 -0.02 1.47 16 50 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 51 H 0.06 1.22 6.51 -2.39 -0.02 1.20 16 52 H 0.08 1.41 6.36 -2.39 -0.02 1.40 16 Total: -1.00 -77.06 398.66 3.37 -73.70 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.44 Total: 26.50 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 8.99 Total: 0.62 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -8.05 Total: -132.94 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.05 Total: -15.52 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -77.06 3.37 -73.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101535645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.110 kcal (2) G-P(sol) polarization free energy of solvation -77.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds