Wall clock time and date at job start Wed Apr 1 2020 04:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47555 * 2 1 4 4 C 1.52995 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47372 * 304.99963 * 4 3 2 6 6 C 1.52999 * 109.47033 * 65.00379 * 4 3 2 7 7 C 1.53003 * 109.47124 * 185.76595 * 6 4 3 8 8 C 1.50704 * 109.46999 * 185.00032 * 4 3 2 9 9 O 1.21282 * 119.99746 * 275.07297 * 8 4 3 10 10 N 1.34777 * 119.99776 * 95.07841 * 8 4 3 11 11 C 1.46495 * 119.99730 * 184.92033 * 10 8 4 12 12 H 1.09003 * 110.41782 * 327.48189 * 11 10 8 13 13 C 1.54764 * 110.46503 * 204.99827 * 11 10 8 14 14 C 1.53387 * 101.45062 * 265.48420 * 13 11 10 15 15 C 1.52463 * 115.84592 * 106.82625 * 14 13 11 16 16 N 1.47252 * 87.71502 * 90.72054 * 15 14 13 17 17 C 1.36943 * 135.93949 * 206.21439 * 16 15 14 18 18 H 1.08006 * 119.99655 * 353.98110 * 17 16 15 19 19 C 1.38809 * 120.00064 * 173.97898 * 17 16 15 20 20 N 1.31623 * 119.99988 * 177.60554 * 19 17 16 21 21 Si 1.86795 * 119.99968 * 357.60972 * 19 17 16 22 22 H 1.48500 * 109.47247 * 176.08480 * 21 19 17 23 23 H 1.48497 * 109.47302 * 296.08286 * 21 19 17 24 24 H 1.48504 * 109.47446 * 56.08643 * 21 19 17 25 25 C 1.47257 * 88.11988 * 26.46874 * 16 15 14 26 26 N 1.46042 * 106.81369 * 335.19179 * 14 13 11 27 27 C 1.37276 * 142.31350 * 196.38062 * 26 14 13 28 28 C 1.34517 * 106.92098 * 179.87924 * 27 26 14 29 29 N 1.33975 * 108.05504 * 0.02562 * 28 27 26 30 30 C 1.30851 * 109.35226 * 0.04256 * 29 28 27 31 31 H 1.09007 * 109.46700 * 300.00001 * 1 2 3 32 32 H 1.09003 * 109.46940 * 59.99700 * 1 2 3 33 33 H 1.09003 * 109.47438 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.46700 * 239.99999 * 2 1 3 35 35 H 1.09002 * 109.47353 * 120.00637 * 2 1 3 36 36 H 1.09004 * 109.46621 * 60.00180 * 3 2 1 37 37 H 1.09001 * 109.46733 * 300.00168 * 3 2 1 38 38 H 1.09005 * 109.47200 * 305.75972 * 6 4 3 39 39 H 1.08999 * 109.47634 * 65.75838 * 6 4 3 40 40 H 1.08990 * 109.47589 * 64.73074 * 7 6 4 41 41 H 1.09000 * 109.46839 * 184.73766 * 7 6 4 42 42 H 1.09000 * 109.46678 * 304.73125 * 7 6 4 43 43 H 0.96998 * 119.99956 * 4.91652 * 10 8 4 44 44 H 1.08996 * 111.02808 * 147.44352 * 13 11 10 45 45 H 1.09001 * 111.06197 * 23.53712 * 13 11 10 46 46 H 1.09005 * 113.51016 * 336.00744 * 15 14 13 47 47 H 1.08997 * 113.57149 * 205.44091 * 15 14 13 48 48 H 0.97002 * 119.99657 * 354.97349 * 20 19 17 49 49 H 1.08999 * 113.51207 * 88.24054 * 25 16 15 50 50 H 1.08999 * 113.51133 * 218.81132 * 25 16 15 51 51 H 1.07992 * 126.53661 * 359.85709 * 27 26 14 52 52 H 1.08002 * 125.97273 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 6 4.0794 0.8330 -1.3083 7 6 5.6026 0.7005 -1.2500 8 6 4.0725 2.8578 0.1232 9 8 4.1867 3.5495 -0.8665 10 7 4.3951 3.3548 1.3337 11 6 4.7801 4.7618 1.4689 12 1 5.2982 5.1021 0.5722 13 6 5.6723 4.9610 2.7177 14 6 4.6350 5.3701 3.7709 15 6 4.3037 4.3164 4.8218 16 7 5.3808 4.8867 5.6481 17 6 6.2154 4.4264 6.6314 18 1 6.0861 3.4297 7.0267 19 6 7.2276 5.2409 7.1201 20 7 7.9999 4.8163 8.0977 21 14 7.4938 6.9397 6.3903 22 1 8.5649 7.6399 7.1437 23 1 7.8943 6.8096 4.9663 24 1 6.2337 7.7204 6.4807 25 6 5.1637 6.1700 4.9593 26 7 3.5049 5.9481 3.0486 27 6 2.3835 6.7202 3.2244 28 6 1.7971 6.8388 2.0196 29 7 2.5345 6.1604 1.1303 30 6 3.5602 5.6217 1.7385 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6768 1.9562 0.8901 37 1 1.6767 1.9563 -0.8900 38 1 3.6342 -0.1522 -1.4478 39 1 3.8025 1.4782 -2.1421 40 1 5.8759 -0.0102 -0.4702 41 1 5.9735 0.3455 -2.2115 42 1 6.0435 1.6721 -1.0268 43 1 4.3722 2.7810 2.1154 44 1 6.3998 5.7564 2.5557 45 1 6.1680 4.0314 2.9973 46 1 4.5019 3.2964 4.4924 47 1 3.3120 4.4334 5.2588 48 1 7.8165 3.9654 8.5259 49 1 4.4073 6.7955 5.4335 50 1 6.0859 6.7104 4.7459 51 1 2.0379 7.1499 4.1529 52 1 0.8904 7.3855 1.8065 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101649901.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:17 Heat of formation + Delta-G solvation = 85.543523 kcal Electronic energy + Delta-G solvation = -31900.070714 eV Core-core repulsion = 27902.652042 eV Total energy + Delta-G solvation = -3997.418672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.54877 -40.06286 -39.14471 -36.64110 -35.59056 -33.45567 -33.22209 -32.19714 -30.96444 -29.33789 -28.42689 -27.66329 -26.01480 -25.17348 -24.14591 -22.89657 -22.07685 -21.34881 -21.12699 -20.06718 -19.91367 -19.06196 -17.77524 -17.41335 -16.89467 -16.07152 -15.45046 -15.41790 -15.33441 -14.95927 -14.56683 -14.40083 -14.17361 -14.00170 -13.76003 -13.70035 -13.44059 -13.35740 -13.22017 -13.09417 -12.82895 -12.36812 -12.27862 -12.09331 -11.92180 -11.89650 -11.61002 -11.48043 -11.36064 -11.28699 -11.00535 -10.92727 -10.83217 -10.74275 -10.62884 -9.83735 -9.74646 -9.64745 -9.34728 -9.32788 -9.24198 -9.07487 -8.26149 -7.49308 -6.54750 -3.52147 2.08266 2.58752 2.83234 2.97791 3.21813 3.24684 3.46796 3.48047 3.92239 4.23378 4.37357 4.38361 4.42386 4.51199 4.59728 4.60153 4.65336 4.85372 4.94287 5.03650 5.08726 5.17165 5.25374 5.25725 5.31907 5.42300 5.43922 5.50472 5.52974 5.58320 5.62016 5.66589 5.68400 5.79767 5.81490 5.83356 5.84345 5.85999 5.88255 5.89333 5.97368 6.03120 6.10322 6.13410 6.24004 6.33270 6.54406 6.67130 6.99099 7.22300 7.40431 7.99280 8.18886 8.30028 8.71147 9.21284 10.00346 10.96664 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.003296 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.730682 B = 8492.336763 C = 9225.726944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.105 4.105 5 H 0.088 0.912 6 C -0.110 4.110 7 C -0.155 4.155 8 C 0.525 3.475 9 O -0.525 6.525 10 N -0.719 5.719 11 C 0.226 3.774 12 H 0.119 0.881 13 C -0.099 4.099 14 C 0.107 3.893 15 C 0.129 3.871 16 N -0.612 5.612 17 C -0.311 4.311 18 H 0.087 0.913 19 C -0.015 4.015 20 N -0.925 5.925 21 Si 1.066 2.934 22 H -0.291 1.291 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.104 3.896 26 N -0.452 5.452 27 C -0.026 4.026 28 C -0.032 4.032 29 N -0.467 5.467 30 C 0.169 3.831 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.402 0.598 44 H 0.105 0.895 45 H 0.116 0.884 46 H 0.057 0.943 47 H 0.046 0.954 48 H 0.264 0.736 49 H 0.051 0.949 50 H 0.063 0.937 51 H 0.169 0.831 52 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 -6.940 -15.292 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.126 4.126 5 H 0.106 0.894 6 C -0.148 4.148 7 C -0.212 4.212 8 C 0.312 3.688 9 O -0.400 6.400 10 N -0.372 5.372 11 C 0.119 3.881 12 H 0.137 0.863 13 C -0.137 4.137 14 C 0.022 3.978 15 C 0.002 3.998 16 N -0.340 5.340 17 C -0.437 4.437 18 H 0.105 0.895 19 C -0.215 4.215 20 N -0.566 5.566 21 Si 0.899 3.101 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.022 4.022 26 N -0.135 5.135 27 C -0.159 4.159 28 C -0.181 4.181 29 N -0.186 5.186 30 C -0.095 4.095 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.237 0.763 44 H 0.123 0.877 45 H 0.134 0.866 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.080 0.920 51 H 0.186 0.814 52 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.595 -5.257 -16.314 19.643 hybrid contribution -1.252 -1.243 1.636 2.406 sum -10.847 -6.500 -14.678 19.374 Atomic orbital electron populations 1.21772 0.95725 1.01550 1.02026 1.21581 0.95987 0.96213 1.02276 1.21512 0.92147 0.97598 1.03247 1.21402 0.97308 0.93090 1.00809 0.89382 1.21497 0.96083 1.00906 0.96306 1.21811 0.95731 1.01970 1.01727 1.20639 0.76270 0.89182 0.82738 1.90708 1.51836 1.60802 1.36652 1.46083 1.70407 1.10295 1.10373 1.19770 0.88338 0.79581 1.00425 0.86344 1.22564 0.95722 1.05316 0.90144 1.23125 0.84693 0.97966 0.92049 1.22519 0.93458 0.95607 0.88235 1.45881 1.38254 1.05419 1.44487 1.20147 1.08957 1.01058 1.13536 0.89504 1.25714 0.93367 1.04358 0.98054 1.70918 1.38662 1.23293 1.23684 0.83769 0.75749 0.75792 0.74808 1.21764 1.21724 1.21719 1.22939 0.98823 0.91580 0.88853 1.46430 1.19029 1.36939 1.11077 1.22404 0.89777 1.02284 1.01439 1.22262 1.02095 1.05216 0.88556 1.69832 1.03784 1.12079 1.32868 1.24557 0.99584 1.03037 0.82325 0.92701 0.92657 0.92740 0.91509 0.91854 0.91544 0.90958 0.90958 0.90548 0.92800 0.92502 0.92505 0.76275 0.87672 0.86613 0.92450 0.93629 0.92559 0.93117 0.91984 0.81393 0.81151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.91 5.70 -26.73 -0.15 -1.07 16 3 C -0.11 -1.00 4.66 -26.73 -0.12 -1.13 16 4 C -0.10 -1.00 2.19 -91.77 -0.20 -1.20 16 5 H 0.09 0.70 8.09 -51.93 -0.42 0.28 16 6 C -0.11 -1.00 5.05 -26.73 -0.13 -1.13 16 7 C -0.16 -1.40 9.81 37.16 0.36 -1.03 16 8 C 0.53 6.74 5.80 -10.98 -0.06 6.68 16 9 O -0.53 -8.67 15.67 5.56 0.09 -8.58 16 10 N -0.72 -8.72 5.10 -53.56 -0.27 -8.99 16 11 C 0.23 3.15 3.33 -67.68 -0.23 2.92 16 12 H 0.12 1.71 7.49 -51.93 -0.39 1.32 16 13 C -0.10 -1.38 6.13 -25.60 -0.16 -1.54 16 14 C 0.11 1.72 1.66 -133.41 -0.22 1.50 16 15 C 0.13 2.24 8.15 -7.91 -0.06 2.18 16 16 N -0.61 -13.38 3.65 -184.74 -0.67 -14.05 16 17 C -0.31 -8.16 11.09 -15.06 -0.17 -8.32 16 18 H 0.09 2.40 8.05 -52.48 -0.42 1.98 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.92 -27.43 13.70 55.49 0.76 -26.67 16 21 Si 1.07 24.93 24.99 -169.99 -4.25 20.68 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.24 6.70 56.52 0.38 -5.86 16 24 H -0.29 -6.39 6.43 56.52 0.36 -6.02 16 25 C 0.10 2.02 5.50 -7.78 -0.04 1.98 16 26 N -0.45 -7.10 3.41 -100.94 -0.34 -7.44 16 27 C -0.03 -0.37 12.03 -16.43 -0.20 -0.57 16 28 C -0.03 -0.48 11.86 -17.93 -0.21 -0.69 16 29 N -0.47 -8.15 11.25 -10.48 -0.12 -8.27 16 30 C 0.17 2.74 8.23 -154.56 -1.27 1.47 16 31 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.45 6.45 -51.92 -0.33 0.12 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.53 6.31 -51.93 -0.33 0.20 16 39 H 0.08 0.82 7.65 -51.93 -0.40 0.42 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.61 7.18 -51.93 -0.37 0.24 16 43 H 0.40 4.14 8.59 -40.82 -0.35 3.79 16 44 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.12 1.54 7.87 -51.93 -0.41 1.13 16 46 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.26 7.72 8.73 -40.82 -0.36 7.36 16 49 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 50 H 0.06 1.25 3.96 -51.93 -0.21 1.04 16 51 H 0.17 2.03 8.06 -52.49 -0.42 1.60 16 52 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 408.72 15.07 6.16 6.16 Total: -1.00 -32.83 408.72 -10.01 -42.84 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -8.76 Total: 5.54 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.60 Total: -1.22 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -0.65 Total: -65.42 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -4.25 Total: 20.68 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.83 -10.01 -42.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101649901.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.384 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds